TCONS_00007817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007817
Unique NameTCONS_00007817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007817 ID=TCONS_00007817|Name=TCONS_00007817|organism=Clytia hemisphaerica|type=transcript|length=1832bp
ctaaaatatttttatttgtgcTCTCTagatatgaaaaagaaaaaattata
aaacgaATCCAATAGCATTGGATGTAAAAGTGAAGATGTTATCACttcaa
atgagaaaaacacTTGCCAGTTACAGAAAACGCATTCCGAGTTTGTTGGA
GCGTACAATATGTATTGGACATACAGTTCAAAACAAACACACAAACTTGA
GACAATATGCACCATTGAAAGACAACCAAATGAAATATATAACAAATACA
ATGTCATCACGTTATTTAACCACGACTGCATGTAAACTTGGTGTCAACAT
AAGACCACATCAATCGATACCAACTAGATTAGCAGCCGAGCAACTTGTTC
GTGACATGACAGAAGAAGAAAGGCAGAAAGTGATGACTGTTTTACAAGAT
CTAGAGCAAGAACACTCGTTGGAGAAAGGTGGTCAACAAGAAGAACCACC
AACTTTCAATCATCTATGGCTACTTGCGTTTGCGAATTCCATTCCCTTCA
TTGGCTTTGGCTTCTTTGACAATGCTATCATGATCCTGGCTGGTGAATAC
ATTGATTATACGGTTGGTGCAACtctgggtatatccaccatggCAGccGC
TGCCATTGGAAATATGATCTCTGATGTTGCTGGTATCGGTCTTGCAGGAT
GGGTAGAAACGTTAGCATATCGCTTTGGATTTGACGAGCCAGCTCTGACA
CCTGCACAAATGTCAATGACGCAATCAAGAGTCGCTTGCCATTTCGGTCG
TGCGATTGGCATCGTGATAGGTTGTATCATTGGTATGGCGCCTTTAGCCT
TCATCTCATCTAAGGAACATTGTgagaaagagcatgaaaaagaTGAGGAA
TGAAGAATGTATCTCACTTAGATAGCTGTTTCAAGTATGGACTATCAGGC
ATACCTGTATGTTGTTGTTTGCTTTCTTGCTTCATTTTTGTGATTACATG
ACAAAAGAGTAAGGTGTTATTATGAATTATGACAGCTCCTTGCTTGTTGA
ACGGACAAACGAACAATTGAGCTGCTGAAATATTGTTGGGACAGGGTAGG
TATCCGCTGTATGTTTTACCACATTGGTTTACTTTTTGGACATAAACGAA
GCTacgaaaacttttttgatttgcattttttaaatcattattttctattt
tctatttagtatttttaaataaaatgaaatttatgTACATGTGATGTGTA
TAGGTCAAATAACTCATAAAAAAGattgtttgagatttttttcttctgca
GAATCCTTTCATGACGCTGAGCAAAACATCCGAAAACAATTTACCTCACT
TTTTTCAATCACAATTTTTTAAGTTGGGTACTTACACGCTTTTTACACTG
GAATTCTTGCTACTTGCATTTCTTGGTTTTACTCAGGGCTCACAGAAAGG
ttcaacaaacaaaaacatctcaaaccatctgattagtCATAAGAAttgag
aaatatcaaaattataataaaaattttatatcGATTAGACGCTATTTTTA
TTTAACAAATTTATTGTAATGTATTTACTACTTAGATAGACAGACAGCAC
AAATGAAAGATGCCCAATGAATGACAGTTGCATTGCTTTCAATTTATTTC
CCGAGCGGTATTTTAACCGGTACACCATTCACCAAGACAGTTGCAGAATC
TTTGGCCACaggattttgttgttgttgtgctTTAGCTTGGTTTAGAAGCT
GTTGTAGTGTTTGCAATGCATTGGCTGTTTTAGACGGATCGGTTGCGCAT
GTGCCAGATCGTTTACAAGCTGGTTGTTGTTTGTCAGCGCCTCCTGTCAG
GTCGATCTTGACATCTGATTGGACATTGGCAT
Run BLAST on NCBI

protein sequence of TCONS_00007817-protein

>TCONS_00007817-protein ID=TCONS_00007817-protein|Name=TCONS_00007817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MLSLQMRKTLASYRKRIPSLLERTICIGHTVQNKHTNLRQYAPLKDNQMK
YITNTMSSRYLTTTACKLGVNIRPHQSIPTRLAAEQLVRDMTEEERQKVM
TVLQDLEQEHSLEKGGQQEEPPTFNHLWLLAFANSIPFIGFGFFDNAIMI
LAGEYIDYTVGATLGISTMAAAAIGNMISDVAGIGLAGWVETLAYRFGFD
EPALTPAQMSMTQSRVACHFGRAIGIVIGCIIGMAPLAFISSKEHCEKEH
EKDEE
Run BLAST on NCBI

transcript from alignment at sc0000080:237360..240760+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007817 ID=TCONS_00007817|Name=TCONS_00007817|organism=Clytia hemisphaerica|type=transcript|length=3401bp|location=Sequence derived from alignment at sc0000080:237360..240760+ (Clytia hemisphaerica)
ctaaaatatttttatttgtgcTCTCTagatatgaaaaagaaaaaattata
aaacgaATCCAATAGCATTGGATGTAAAAGTGAAGATGTTATCACttcaa
atgagaaaaacacTTGCCAGTTACAGAAAACGCATTCCGAGTTTGTTGGA
GCGTACAATATGTATTGGACATACAGTTCAAAACAAACACACAAACTTGA
GACAATATGCACCATTGAAAGACAACCAAATGAAATATATAACAAATACA
ATGTCATCACGTTATTTAACCACGACTGCATGTAAACTTGGTGTCAACAT
AAGACCACATCAATCGATACCAACTAGATTAGCAGCCGAGCAACTTGTTC
GTGACATGACAGAAGAAGAAAGGCAGAAAGTGATGACTGTTTTACAAGAT
CTAGAGCAAGAACACTCGTTGGAGAAAGGTGGTCAACAAGAAGAACCACC
AACTTTCAATCATCTATGGCTACGTAAGTTTCCCCTCTTTTTATGCCCAG
TCCTTTTCACCACCTGGTATATGAGCTAGCTCACTTATACTAACCTAACT
CGAAATTGTAAATACAGCCTTTTTTACTTTCTACCTATTTTTACCTTCCG
AAATTATATGTTGCATTCATTCTTTCCTTGTTACCTTTTAGTTGCGTTTG
CGAATTCCATTCCCTTCATTGGCTTTGGCTTCTTTGACAATGCTATCATG
ATCCTGGCTGTAAGTATTTATTACTCCCCCAACTGCCTCCAAAGCAATTT
GACTCTTTATAGTTTAAACATGGGGGCTAGTTAAAGATGGGGCCACCTCC
ATTAAACCGATTCAATATGGAAACGGGGAATTTACTTCCTATTTGTGACG
TGGTATTAAACCTTGACAGTACTGATCTAATACACAGAAACGGATAGCAA
CACTTAGTTACGGATAGTTTTATCGTCCTAACCTCTTAATTTTGCAGGGT
GAATACATTGATTATACGGTTGGTGCAACtctgggtatatccaccatggC
AGGTATAATAAAATTCTTTAATTCATTCTTTAAGGCTTGAAGGGTTTAGT
CTTTGAAGGGCTAATAGCTTGGGTACATTTTGAACACGACCTTTTCATGT
TGAGACGACGTTCAACCAAGTATCATTTTTATTctgtatctatttttctt
tagccGCTGCCATTGGAAATATGATCTCTGATGTTGCTGGTATCGGGTAA
GTAACACTCGCTTCCTTTTCCATATCAAGTATTGAAGGTTTTACAATTTA
CTCACTTGGTTGGGTTTTCTTGACCTTGTTCTAGAAAGAtttattaaaga
aaaatggTACTGATATACTATTGGATAGACCAATATAATTATTGGGACAC
TCGATATTGTACGCTACCGTCATAGTGTCCTTGTGGGTTggttgcccccc
cccccccaaatttttttcaaaaaggggttttttaaaaaattagggggggg
gggggccccccccccccctagatttttgaaaaaccccttttcgaaaaata
tttcgaaGCCTCAAAGTCAAGCGACATTTTTGTattaaaattgaatcatt
tCTCTGAAAAAGGCATGTTTTACATTGTTTTGctaaaaaatgcataaaat
atgCTATATTTTACTGCTTTAAAGCCTGAAAATCTTTTCCCCCACCTAGA
GATTTTCCCATTTGCATCTAATATTTGTCCGTcccttgattttcaaaaag
gtttATTCAATGTTTTCATAGGCTCTATTTTCTTACACTCAATTTTGTGT
TTAAGTCTTGCAGGATGGGTAGAAACGTTAGCATATCGCTTTGGATTTGA
CGAGCCAGCTCTGACACCTGCACAAATGTCAATGACGCAATCAAGAGTCG
CTTGCCATTTCGTAAGTGAACGATTTTATCCTTGAGATATATTCGAATGT
TAACTGAAACCAAACTTTTCGATACGTACGAATTCTTCAAGCACCAGTTA
TAAGCACTTTTCAGTCACTCATTCGCACTGTTCAATTTATTCATTACAAA
CACAACGTTTTTATACTCGAATCGAAGGTTTCAGTAAACTATTTTTGACT
GAATTTATCCTTCCTGATCAtaggtttaatttttttttttgcttacttgt
caattttaattcacaagctttttcacattggatcgacacggatgtggagc
aagattgatcagaaagaggaaaaaacaacattttttgcttatatcagcat
aatataacaatggcaacacactgtcctgatataaaatatgtgcctgatat
gaaacgggaacacttatgtaaaaataaaacctttaattgtTTGTTGGATT
TTTTCACAACTCAGGGTCGTGCGATTGGCATCGTGATAGGTTGTATCATT
GGTATGGCGCCTTTAGCCTTCATCTCATCTAAGGAACATTGTgagaaaga
gcatgaaaaagaTGAGGAATGAAGAATGTATCTCACTTAGATAGCTGTTT
CAAGTATGGACTATCAGGCATACCTGTATGTTGTTGTTTGCTTTCTTGCT
TCATTTTTGTGATTACATGACAAAAGAGTAAGGTGTTATTATGAATTATG
ACAGCTCCTTGCTTGTTGAACGGACAAACGAACAATTGAGCTGCTGAAAT
ATTGTTGGGACAGGGTAGGTATCCGCTGTATGTTTTACCACATTGGTTTA
CTTTTTGGACATAAACGAAGCTacgaaaacttttttgatttgcatttttt
aaatcattattttctattttctatttagtatttttaaataaaatgaaatt
tatgTACATGTGATGTGTATAGGTCAAATAACTCATAAAAAAGattgttt
gagatttttttcttctgcaGAATCCTTTCATGACGCTGAGCAAAACATCC
GAAAACAATTTACCTCACTTTTTTCAATCACAATTTTTTAAGTTGGGTAC
TTACACGCTTTTTACACTGGAATTCTTGCTACTTGCATTTCTTGGTTTTA
CTCAGGGCTCACAGAAAGGttcaacaaacaaaaacatctcaaaccatctg
attagtCATAAGAAttgagaaatatcaaaattataataaaaattttatat
cGATTAGACGCTATTTTTATTTAACAAATTTATTGTAATGTATTTACTAC
TTAGATAGACAGACAGCACAAATGAAAGATGCCCAATGAATGACAGTTGC
ATTGCTTTCAATTTATTTCCCGAGCGGTATTTTAACCGGTACACCATTCA
CCAAGACAGTTGCAGAATCTTTGGCCACaggattttgttgttgttgtgct
TTAGCTTGGTTTAGAAGCTGTTGTAGTGTTTGCAATGCATTGGCTGTTTT
AGACGGATCGGTTGCGCATGTGCCAGATCGTTTACAAGCTGGTTGTTGTT
TGTCAGCGCCTCCTGTCAGGTCGATCTTGACATCTGATTGGACATTGGCA
T

Coding sequence (CDS) from alignment at sc0000080:237360..240760+

>TCONS_00007817 ID=TCONS_00007817|Name=TCONS_00007817|organism=Clytia hemisphaerica|type=CDS|length=4608bp|location=Sequence derived from alignment at sc0000080:237360..240760+ (Clytia hemisphaerica)
ATGTTATCACttcaaatgagaaaaacacTTGCCAGTTACAGAAAACGCAT
TCCGAGTTTGTTGGAGCGTACAATATGTATTGGACATACAGTTCAAAACA
AACACACAAACTTGAGACAATATGCACCATTGAAAGACAACCAAATGAAA
TATATAACAAATACAATGTCATCACGTTATTTAACCACGACTGCATGTAA
ACTTGGTGTCAACATAAGACCACATCAATCGATACCAACTAGATTAGCAG
CCGAGCAACTTGTTCGTGACATGACAGAAGAAGAAAGGCAGAAAGTGATG
ACTGTTTTACAAGATCTAGAGCAAGAACACTCGTTGGAGAAAGGTGGTCA
ACAAGAAGAACCACCAACTTTCAATCATCTATGGCTACTTGCGTTTGCGA
ATTCCATTCCCTTCATTGGCTTTGGCTTCTTTGACAATGCTATCATGATC
CTGGCTGGTGAATACATTGATTATACGGTTGGTGCAACtctgggtatatc
caccatggCAGccGCTGCCATTGGAAATATGATCTCTGATGTTGCTGGTA
TCGGTCTTGCAGGATGGGTAGAAACGTTAGCATATCGCTTTGGATTTGAC
GAGCCAGCTCTGACACCTGCACAAATGTCAATGACGCAATCAAGAGTCGC
TTGCCATTTCGGTCGTGCGATTGGCATCGTGATAGGTTGTATCATTGGTA
TGGCGCCTTTAGCCTTCATCTCATCTAAGGAACATTGTgagaaagagcat
gaaaaagaTGAGGAATGAATGTTATCACttcaaatgagaaaaacacTTGC
CAGTTACAGAAAACGCATTCCGAGTTTGTTGGAGCGTACAATATGTATTG
GACATACAGTTCAAAACAAACACACAAACTTGAGACAATATGCACCATTG
AAAGACAACCAAATGAAATATATAACAAATACAATGTCATCACGTTATTT
AACCACGACTGCATGTAAACTTGGTGTCAACATAAGACCACATCAATCGA
TACCAACTAGATTAGCAGCCGAGCAACTTGTTCGTGACATGACAGAAGAA
GAAAGGCAGAAAGTGATGACTGTTTTACAAGATCTAGAGCAAGAACACTC
GTTGGAGAAAGGTGGTCAACAAGAAGAACCACCAACTTTCAATCATCTAT
GGCTACTTGCGTTTGCGAATTCCATTCCCTTCATTGGCTTTGGCTTCTTT
GACAATGCTATCATGATCCTGGCTGGTGAATACATTGATTATACGGTTGG
TGCAACtctgggtatatccaccatggCAGccGCTGCCATTGGAAATATGA
TCTCTGATGTTGCTGGTATCGGTCTTGCAGGATGGGTAGAAACGTTAGCA
TATCGCTTTGGATTTGACGAGCCAGCTCTGACACCTGCACAAATGTCAAT
GACGCAATCAAGAGTCGCTTGCCATTTCGGTCGTGCGATTGGCATCGTGA
TAGGTTGTATCATTGGTATGGCGCCTTTAGCCTTCATCTCATCTAAGGAA
CATTGTgagaaagagcatgaaaaagaTGAGGAATGAATGTTATCACttca
aatgagaaaaacacTTGCCAGTTACAGAAAACGCATTCCGAGTTTGTTGG
AGCGTACAATATGTATTGGACATACAGTTCAAAACAAACACACAAACTTG
AGACAATATGCACCATTGAAAGACAACCAAATGAAATATATAACAAATAC
AATGTCATCACGTTATTTAACCACGACTGCATGTAAACTTGGTGTCAACA
TAAGACCACATCAATCGATACCAACTAGATTAGCAGCCGAGCAACTTGTT
CGTGACATGACAGAAGAAGAAAGGCAGAAAGTGATGACTGTTTTACAAGA
TCTAGAGCAAGAACACTCGTTGGAGAAAGGTGGTCAACAAGAAGAACCAC
CAACTTTCAATCATCTATGGCTACTTGCGTTTGCGAATTCCATTCCCTTC
ATTGGCTTTGGCTTCTTTGACAATGCTATCATGATCCTGGCTGGTGAATA
CATTGATTATACGGTTGGTGCAACtctgggtatatccaccatggCAGccG
CTGCCATTGGAAATATGATCTCTGATGTTGCTGGTATCGGTCTTGCAGGA
TGGGTAGAAACGTTAGCATATCGCTTTGGATTTGACGAGCCAGCTCTGAC
ACCTGCACAAATGTCAATGACGCAATCAAGAGTCGCTTGCCATTTCGGTC
GTGCGATTGGCATCGTGATAGGTTGTATCATTGGTATGGCGCCTTTAGCC
TTCATCTCATCTAAGGAACATTGTgagaaagagcatgaaaaagaTGAGGA
ATGAATGTTATCACttcaaatgagaaaaacacTTGCCAGTTACAGAAAAC
GCATTCCGAGTTTGTTGGAGCGTACAATATGTATTGGACATACAGTTCAA
AACAAACACACAAACTTGAGACAATATGCACCATTGAAAGACAACCAAAT
GAAATATATAACAAATACAATGTCATCACGTTATTTAACCACGACTGCAT
GTAAACTTGGTGTCAACATAAGACCACATCAATCGATACCAACTAGATTA
GCAGCCGAGCAACTTGTTCGTGACATGACAGAAGAAGAAAGGCAGAAAGT
GATGACTGTTTTACAAGATCTAGAGCAAGAACACTCGTTGGAGAAAGGTG
GTCAACAAGAAGAACCACCAACTTTCAATCATCTATGGCTACTTGCGTTT
GCGAATTCCATTCCCTTCATTGGCTTTGGCTTCTTTGACAATGCTATCAT
GATCCTGGCTGGTGAATACATTGATTATACGGTTGGTGCAACtctgggta
tatccaccatggCAGccGCTGCCATTGGAAATATGATCTCTGATGTTGCT
GGTATCGGTCTTGCAGGATGGGTAGAAACGTTAGCATATCGCTTTGGATT
TGACGAGCCAGCTCTGACACCTGCACAAATGTCAATGACGCAATCAAGAG
TCGCTTGCCATTTCGGTCGTGCGATTGGCATCGTGATAGGTTGTATCATT
GGTATGGCGCCTTTAGCCTTCATCTCATCTAAGGAACATTGTgagaaaga
gcatgaaaaagaTGAGGAATGAATGTTATCACttcaaatgagaaaaacac
TTGCCAGTTACAGAAAACGCATTCCGAGTTTGTTGGAGCGTACAATATGT
ATTGGACATACAGTTCAAAACAAACACACAAACTTGAGACAATATGCACC
ATTGAAAGACAACCAAATGAAATATATAACAAATACAATGTCATCACGTT
ATTTAACCACGACTGCATGTAAACTTGGTGTCAACATAAGACCACATCAA
TCGATACCAACTAGATTAGCAGCCGAGCAACTTGTTCGTGACATGACAGA
AGAAGAAAGGCAGAAAGTGATGACTGTTTTACAAGATCTAGAGCAAGAAC
ACTCGTTGGAGAAAGGTGGTCAACAAGAAGAACCACCAACTTTCAATCAT
CTATGGCTACTTGCGTTTGCGAATTCCATTCCCTTCATTGGCTTTGGCTT
CTTTGACAATGCTATCATGATCCTGGCTGGTGAATACATTGATTATACGG
TTGGTGCAACtctgggtatatccaccatggCAGccGCTGCCATTGGAAAT
ATGATCTCTGATGTTGCTGGTATCGGTCTTGCAGGATGGGTAGAAACGTT
AGCATATCGCTTTGGATTTGACGAGCCAGCTCTGACACCTGCACAAATGT
CAATGACGCAATCAAGAGTCGCTTGCCATTTCGGTCGTGCGATTGGCATC
GTGATAGGTTGTATCATTGGTATGGCGCCTTTAGCCTTCATCTCATCTAA
GGAACATTGTgagaaagagcatgaaaaagaTGAGGAATGAATGTTATCAC
ttcaaatgagaaaaacacTTGCCAGTTACAGAAAACGCATTCCGAGTTTG
TTGGAGCGTACAATATGTATTGGACATACAGTTCAAAACAAACACACAAA
CTTGAGACAATATGCACCATTGAAAGACAACCAAATGAAATATATAACAA
ATACAATGTCATCACGTTATTTAACCACGACTGCATGTAAACTTGGTGTC
AACATAAGACCACATCAATCGATACCAACTAGATTAGCAGCCGAGCAACT
TGTTCGTGACATGACAGAAGAAGAAAGGCAGAAAGTGATGACTGTTTTAC
AAGATCTAGAGCAAGAACACTCGTTGGAGAAAGGTGGTCAACAAGAAGAA
CCACCAACTTTCAATCATCTATGGCTACTTGCGTTTGCGAATTCCATTCC
CTTCATTGGCTTTGGCTTCTTTGACAATGCTATCATGATCCTGGCTGGTG
AATACATTGATTATACGGTTGGTGCAACtctgggtatatccaccatggCA
GccGCTGCCATTGGAAATATGATCTCTGATGTTGCTGGTATCGGTCTTGC
AGGATGGGTAGAAACGTTAGCATATCGCTTTGGATTTGACGAGCCAGCTC
TGACACCTGCACAAATGTCAATGACGCAATCAAGAGTCGCTTGCCATTTC
GGTCGTGCGATTGGCATCGTGATAGGTTGTATCATTGGTATGGCGCCTTT
AGCCTTCATCTCATCTAAGGAACATTGTgagaaagagcatgaaaaagaTG
AGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004438XLOC_004438Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007817-proteinTCONS_00007817-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007817-exon-sc0000080-1491911889:237360..237832TCONS_00007817-exon-sc0000080-1491911889:237360..237832Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:237360..237832TCONS_00007817-exon-sc0000080-1510915933:237360..237832Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:237360..237832TCONS_00007817-exon-sc0000080-1575043694:237360..237832Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1491911889:238001..238068TCONS_00007817-exon-sc0000080-1491911889:238001..238068Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:238001..238068TCONS_00007817-exon-sc0000080-1510915933:238001..238068Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:238001..238068TCONS_00007817-exon-sc0000080-1575043694:238001..238068Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1491911889:238307..238361TCONS_00007817-exon-sc0000080-1491911889:238307..238361Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:238307..238361TCONS_00007817-exon-sc0000080-1510915933:238307..238361Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:238307..238361TCONS_00007817-exon-sc0000080-1575043694:238307..238361Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1491911889:238513..238555TCONS_00007817-exon-sc0000080-1491911889:238513..238555Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:238513..238555TCONS_00007817-exon-sc0000080-1510915933:238513..238555Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:238513..238555TCONS_00007817-exon-sc0000080-1575043694:238513..238555Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1491911889:239115..239220TCONS_00007817-exon-sc0000080-1491911889:239115..239220Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:239115..239220TCONS_00007817-exon-sc0000080-1510915933:239115..239220Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:239115..239220TCONS_00007817-exon-sc0000080-1575043694:239115..239220Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1491911889:239674..240760TCONS_00007817-exon-sc0000080-1491911889:239674..240760Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1510915933:239674..240760TCONS_00007817-exon-sc0000080-1510915933:239674..240760Clytia hemisphaericaexon
TCONS_00007817-exon-sc0000080-1575043694:239674..240760TCONS_00007817-exon-sc0000080-1575043694:239674..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:237360..240760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
56.4818	60.7943	46.3762	43.6638	27.2556	18.7168	6.08797	5.50532	4.42932	4.89113	3.52673	2.84836	4.40235	3.69271	3.91635	4.76244	9.55358	8.26799	4.51168	5.25274	5.11631	5.23514	31.4799	27.2843	5.95604	6.4569	6.01651	5.48333	15.1672	16.9194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019537TMEM65
Blast
[Close]
BLAST of TCONS_00007817 vs. Swiss-Prot (Human)
Match: TMM65 (Transmembrane protein 65 OS=Homo sapiens GN=TMEM65 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 2.270e-43
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 2 
Query:  305 PHQSIPTRLAAEQLVRDMTEEERQKVMTVLQDLEQEHSLEKGGQQEE--PPTFNHLWLLAFANSIPFIGFGFFDNAIMILAGEYIDYTVGATLGISTMAAAAIGNMISDVAGIGLAGWVETLAYRFGFDEPALTPAQMSMTQSRVACHFGRAIGIVIGCIIGMAPLAF 802
            P +++ T   A   +  +   ER     +L++L +  S+    ++ E  PPT   L  +   N+IPFIGFGF DNAIMI+AG +I+ ++G  LGISTMAAAA+GN++SD+AG+GLAG+VE LA R G   P LTP Q+ M Q+R++ H G+A+G+ IGCI+GM PL F
Sbjct:   62 PMEALNTAQGARDFIYSLHSTERS---CLLKELHRFESIAIAQEKLEAPPPTPGQLRYVFIHNAIPFIGFGFLDNAIMIVAGTHIEMSIGIILGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRLSTHLGKAVGVTIGCILGMFPLIF 226
The following BLAST results are available for this feature:
BLAST of TCONS_00007817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMM652.270e-4347.02Transmembrane protein 65 OS=Homo sapiens GN=TMEM65... [more]
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