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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007816 ID=TCONS_00007816|Name=TCONS_00007816|organism=Clytia hemisphaerica|type=transcript|length=372bp
TCCTATAtactaaaattatacaacccgTTTTCATTTGCTCAAAAATCCAA
GGTAATAAGCGGCCACTCAAAAGCTTAACTCCCTCTTGGGAGATAAGATA
TATAACTTTCGGAAAACAGGGCATTCACTGTATCCGATACGGCAGCCCAG
ATCAAGCTATAAACTAGCACAAACACAGCACAGACGATCCTGATCATTGA
TCATTTTTGTAGGAAAGCAGCAGATTAGaaATCTTATGGCACCAACAAAG
AGGAATAGATCAGCTCTTAAGACCTGGTTGGACCCGGTAGCAATATTCAA
TTTTGTGCAAGACCTGatttttcaatataaaaatttttgggTTGTTGCTT
TGAGTTTGTTGCTCGCTGAAAT Run BLAST on NCBI transcript from alignment at sc0000080:219408..226211+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007816 ID=TCONS_00007816|Name=TCONS_00007816|organism=Clytia hemisphaerica|type=transcript|length=6804bp|location=Sequence derived from alignment at sc0000080:219408..226211+ (Clytia hemisphaerica)
TCCTATAtactaaaattatacaacccgTTTTCATTTGCTCAAAAATCCAA
GGTAATAAGCGGCCACTCAAAAGCTTAACTCCCTCTTGGGAGATAAGATA
TATAACTTTCGGAAAACAGGGCATTCACTGTATCCGATACGGCAGCCCAG
ATCAAGCTATAAACTAGCACAAACACAGCACAGACGATCCTGATCATTGA
TCATTTTTGTAGGAAAGCAGCAGATTAGGTAAGTCTTCAGTATCTGTTTC
TTTTTCTACATTCGTTCATCTAAAATTCTATGTATCTAAGTACTAAGAGA
TACATTCACTTCCAGCAATTTGGTAAATTGTAAATTGCCGATGGCCGAAC
GTTAAACATACATTTAAAAACATTGATCCATGTGATTTTTAAACCAGTCA
GGGCACAGGCAGATTctaagcatgttcaaagttcacaataacaaAGTTCa
cgattttctttttattacgggAAATCAACCAAGTGAGAACAAGtcaacta
aaaataaaattaaaactcTACGAAATTGTTAACTCTCGCCGGACTTAaca
aacaccggacacgcgaaagtctggtgtaaaatgagaatttttttccagcg
gacaatctttacaccggacttaaagggacataacagtagtaaaatgtaaa
cattgcgcgaaccacgtgtcattaaagagaacaattaaaatcacgtgtcc
aaaacaaacttgtaaaacaattgaacaatcNNNNNNNNNNNNNNNNNNNN
NNNNNNtggttttattttttattttgacatgtgacatttgttttgatttt
gtatccgctgcatacagtttgtttacaaatttcgcaagtactgttatgtc
cctttaaggaaGTTGGACGTCCGGTGtcagagaaggatatttttttccac
cggacaatcaaaacaccaaNattttagcctgagaaaattagagtttagct
ctaaatattgcgttttagtgggaaatgcaattccataatggcggactttg
gcaactttctaacccaaaccattgtggttctcccagagtatatccagaat
actttcaacaccaaaagatttcaggataccatttgaaaccatttttgaga
tttaagcctgagaaaatcagactttaactctaaatatcgcgttttagtgg
gaaatgcaatactataatggcagacttgggcaaatctctgacccaaacca
ttttgattcttccAGAGTATTCTCAGAATACTTCCAAGAGCTaaagattt
caggacatcatttgaaatcatttttgagattcNCATGCTGTGCTAGAGTT
TTTTTGATGTGTTTCtacccaaataacaataatctgaaaaaaaatttcaa
tttcatgcatttttcagGAATTGCCTGACCAAAAACTGCCGATTTTGGTC
CCAAAACCCCAAAAATggcaatttttgtcattttactGATATTTCTACTT
GTTTATGATCCCACATGAAGCCATTTAGTATTCAAAGTTGTTTGAATATA
ATTTAGAAGTACTTAAGATATAATTTAGGTGCTTTCAACACCTTATTGGA
GCAAaaattaggcaaatttgggccaaaaactcaaaaaaggtaattttttg
tcaattttgttaTGTAAAAGTTGCTTAAATGNcattgctgaaaatttcaa
gtgtgtaccttaaaaagtttaaaagttgtgggtcctcaaaaatgctgctt
tcgtgcattttgctacccagaatcggagaaaatcaacctttttagcctaa
aattgaaacattgagtgatctcgctggggttcttttgtctttttgtgttg
aatattagtacaagacataacttagaaaccattttgaccctttcctggcc
ttttatagtcttaaaatgggcaaaaaaatgccatttttattcatttttcg
ctttagtgcaaatcaaagacccccccccccctggggaatgctggatgACC
TAGGacgttaaaaattgcgcaaaatgtcttacaatagattaaaattttca
caaaaaaatactataCTTTGAATATCACTTTGCcatttgacgatctaccc
tTAATAGAAGGTGATTGGGATATGGCTGCAGATTCCAGAAAGAGACTTTT
TCATTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTAAATTATATTCAAACAACTTTGAATACT
AATTGGCTTCATGTGGGATCATAAACAAGGATAAATACCAGTAAAATGac
gaaaattgctatttttggggTTTTAGGACCAAAATCGGCAGTTTTTGGTC
CGGCAATTCctgaaaaatgcatgaaattgaaaaagattttcagattattg
ttatttgggtaGAAACACATCAAAAAAACTCTAGCACAGCATGATTTGAA
GATAGCCTCATTTTACCCCCACCCCtaaaaggatactttttgccaccaga
caaatacaccggacagtccggtgcgttggCGCAGGGTCCTCATAAAATGA
CATATatactttttaacaacttttttctacaaCGTAAAGATGATGCACAA
ATCAAAGTACAATAACTGACAGAAGAGGTATTGGCGAAATTTTCCAGAGA
ATCTTTTCATTGATTTTCCTAGGGGGTTTCAAGCATTTTTAGGATTTCCA
AGGGGGCTATTTCAGGTTTCCAGTGGGTTATTAAAAGATCTGATGGTATG
ATGGCTTCTTCATAAAAGCGAAAgacacaaatatatttttcgtATTCAGC
ATGCGGAAATAGTGTCAAGACCTGCATGCATCctagtagggttgggtatg
ggtgtgttTTGGGTGTGGTTGGGTGTGATTGGATATCAAGTTGGCTAAGA
TTTGgtttattatcagttagggttagggttgtaGCTCTCAAAACAatcac
tcttttgtgattttctctcaTTTTAGTCTAGTCTAGTATGTAGTTTATAC
AATATAATATAAATAGCCCTCAGAAAAACTCTCCTGGCATGAATCTGTGG
CGCAGTTGTTAGAGCGTTGGGTTTCTGATCattggaactttgcatttaga
aagttagtggaagtactttgatttgtgaagcgtctttacgtcacatggaa
caaaagaaaatagcaaaagaacaaaggaattacccatagctACCATTTCG
TCAAACATGGGGAATTGTGATTTAACGGAAATGGAAATCCTTATATTCAT
TGAATAAAGCAtctactgaaaatttcattcttccccattaatgcaaaaat
gaaaaacaaagaagcttTCCTTTTctgattgtctttttaatctgccatga
agtgttataaaattccttatagaaGGACACATTCTCCTACGAAGAGTGTT
AAAATAATGacatagaaaaaagttgttaaaaagtatGTCATTTTATGTTA
ACAATTTCGTAAACTACGTCACAACCTCAGAGCGCTGACTTTTGGTTTCC
GTAATAAAAAGAACgtcgttattgtgaactttgaacatgcttaaaatcaa
ggtacttccactaactgttTCTATTTGGTTGAATTGCAGGAGGCTTTTAG
TGGGTTTAAATCTCCACCGGtggcaatttttggaaaatcattcAAACAGT
TGAAAACATAGAGAATAACTCGCGAAGttccaaaaagtcagaaaaactac
aaaCTAGAGACAAGTAtgaaaagtacgaaataagtcaaGATGTGTCTTTC
ACAATTGTGAAGAAGCCTCGGCCATCTCAGATAGATACTTAGGTTTCCAT
GGGTTCTGTCTCCTAAACCAGATAGTACTAATCAATAGAAGGCTTTCAAA
ATAGGTCAATTGTTTACTCATGTAAGATACCGCCCAATTTTGTTGTCAAG
GcaaaaaaaaccataacatttaGCTGGAGCCAagcagattttttgttttg
acgaAGTCTCTTGAAGgacttttgaaattaaaaaaaggtataTAGGCTTA
CAATTCATAAATTTCGAAGAAATATGACTGGTATATACCTACATATCgaa
aatttgattgatattcACTCGCCTCCATATGAATTGTAAGTCTGTTTACC
TCCAAATTAAGCGCAATTGCCCGCCCACATCAGTCCGCccatacaaaatc
aaaacattgaaatgcgTCTATAATAAATTCGATTATCAAAGTAATCAATA
GTGATTtgaagaaattaaatttcgagtaccaaaatttcaaaaaacttgtg
agtattcgatcactttcttaacaatcctttgcaTTCAAAGACTCCATAAT
CGTTTGAGTAATTTTTATTGTCATTAATAACTTTCAATAACCGAGATAAC
TTtgataaccaattgattaccaattgattacttttctcaacttcagttga
gctagaatctgacaatctgacaatgtataCGTCTGTctgaaaactttggg
gcaggctggagacttaaaaaatggttggatttggctgaaatttagcacac
ttgttccttcaggttccttgggtgaatatctgggggtgtttttttcattt
tttgaaaattttcattttttgaaaattttcatttttaagggcatGGTCAC
GAGTTTTTGATAAAACGAGTCTAAAACTtttgggcagcctggagacatca
aaaatggtcagattcagctgaaatttggcacacttgatccttgggcgaAT
CCCTGGGTAAATCCCTGGGCGAATCCCtgagggtgtttttttcatttttt
gaaaattttcattattaagGGCGTGATCACgagttttaaccaaaacaagg
ctaaaactttgaggcaggctggagacttcaaaaatggtccaaattggttg
aaattgaaatatagtaagtataagcagactgtgtctttaattggctgtaa
aaagTTTCTGCATCGGTAGAATTTCTCCAACTTTTAAAAATGATAGAACA
AacctatttaaacaaaattaaccagcgcatttTTATCTTTCTcattcttc
atcttcaatgaagtACTCCAGTcatcgaaataagggatagaaagtgcatc
gcaattttttgataagcatgattttgtgtcctaaaatggatcaattttca
atttttagcttgtaagtaatccaaaaacgcatcgcgaattgcgaattgcg
aaatgcgatacgctaattcgatccctgTACTCAAATTCGaatagaattaa
gcacataagatattcttaaagCCATGAAATATCGTTCACGCTTTCACTAC
GGTGGAGTGCGTGACGTAACTCCAGCAGCAATAAACTCGCCTTTTGTTAg
ctgatcatattgggcgttacCACCCACAAAGCCAGCAGGCACTTTTTTCT
TTCCGCAACTCGGTCCAcaattttaaatgagttaacaatagattCAAAAC
AGCGCCCTCATTTAGGAAgatgatttgttttgatctcAGGGTTTGGAAAG
TAGTAatgttttcaattattttctatggaaaatgataagaaacttaagtt
tacaagtgtcatttgatttttgctggctgatagaatggcagAATCCTGGA
TGGCTTCCCTAACTGATCTAAACTTTAAAGATGCATTcctatattttttt
acaaaaaaatccaaaaagaaattagATTCAAATCTGatttaatcaatttt
ttcaatttagaaATCTTATGGCACCAACAAAGAGGAATAGATCAGCTCTT
AAGACCTGGTTGGACCCGGTAGCAATATTCAATTTTGTGCAAGACCTGat
ttttcaatataaaaatttttgggTTGTTGCTTTGAGTTTGTTGCTCGCTG
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007816-exon-sc0000080-1491911889:219408..219635 | TCONS_00007816-exon-sc0000080-1491911889:219408..219635 | Clytia hemisphaerica | exon |
| TCONS_00007816-exon-sc0000080-1510915933:219408..219635 | TCONS_00007816-exon-sc0000080-1510915933:219408..219635 | Clytia hemisphaerica | exon |
| TCONS_00007816-exon-sc0000080-1575043694:219408..219635 | TCONS_00007816-exon-sc0000080-1575043694:219408..219635 | Clytia hemisphaerica | exon |
| TCONS_00007816-exon-sc0000080-1491911889:226068..226211 | TCONS_00007816-exon-sc0000080-1491911889:226068..226211 | Clytia hemisphaerica | exon |
| TCONS_00007816-exon-sc0000080-1510915933:226068..226211 | TCONS_00007816-exon-sc0000080-1510915933:226068..226211 | Clytia hemisphaerica | exon |
| TCONS_00007816-exon-sc0000080-1575043694:226068..226211 | TCONS_00007816-exon-sc0000080-1575043694:226068..226211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:219408..226211 + |
Blast
The following BLAST results are available for this feature:
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