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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007806 ID=TCONS_00007806|Name=TCONS_00007806|organism=Clytia hemisphaerica|type=transcript|length=7481bpRun BLAST on NCBI protein sequence of TCONS_00007806-protein >TCONS_00007806-protein ID=TCONS_00007806-protein|Name=TCONS_00007806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp MAQQPSMQKGIVKQILSGDNVIIRGQPKGGPPPERQLALSNIVAPRLARRRun BLAST on NCBI transcript from alignment at sc0000080:71000..127076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007806 ID=TCONS_00007806|Name=TCONS_00007806|organism=Clytia hemisphaerica|type=transcript|length=56077bp|location=Sequence derived from alignment at sc0000080:71000..127076+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:71000..127076+ >TCONS_00007806 ID=TCONS_00007806|Name=TCONS_00007806|organism=Clytia hemisphaerica|type=CDS|length=43056bp|location=Sequence derived from alignment at sc0000080:71000..127076+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007806 vs. Swiss-Prot (Human)
Match: SND1 (Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1) HSP 1 Score: 932.169 bits (2408), Expect = 0.000e+0 Identity = 497/906 (54.86%), Postives = 640/906 (70.64%), Query Frame = 1
Query: 2563 PSMQKGIVKQILSGDNVIIRGQPKGGPPPERQLALSNIVAPRLARRAAGESPETKD---EPCAWECREYLRTRLIGKEVQFCIEYKVPGSGKEYGCIFYKRDGEWKNITEELVAEGLVEVRRGGIKPSDDQNNLNQLEXXXXXXXXXX-XXXXXXXRVRNVQWTFESPRNFVDQKKGKPINAIIEMVRDGSTVRAFLLPNFEYVTVMLTGIKCPTSRRDENNKETFEPFAQEAKYFTDCRLLQREIQIILEGVSSSATQNFLGSIIHPAGNIAELLLKEGFAKCVDWSMGVLTSGHEKYRQSERSAKEKKMRMWKDFVASSQPVLSIKEKDFNGKVVEVVNGDAIMVKVGQ-DVKKIFFSSLRPPRAQPKDDGVVENGPSRDAKRGRPLYDIPYMFEAREFLRKKLIGKKVHVRIDYIKPASDG------YPERQCATVTISDINIAEALISKGLATCLRHRQDDDQRSSAYDELLAAENRAQKNAKGLHSNKEAPVHRIADLSGDVSKSRQFLPFLQRAGRSTAVVEFCASGSRFRLYLPKETCLLTFLLAGISCPRMKAFTPSGTQISEDEPMGSEAFRFSKEMALQREVEVQVDSIDKGGNFIGWVFVDNVNVSLALVENGLAKMHFTAERSAYFKELEMAEDKAKAKKIGVWKDFXXX-XXXXXXXXXXXXRKTNYKKVIVTEITSGATFWAQTLDNASQFEQMQQQLRQDLTDNPPLPGSLTPRRGDLVAAVFDVDNLWYRARIEKIEKD-KVHALFVDYGNRDVVNATKLASLPAQFVT--YPAQAREYTLACVKVPNDEEHVYELMQSFAKEAINREFSLNTEYKIGGQEFVTLSNPESKQDIGSVLISNGVLLAEKRREKRLQKLISEYNQAQERARKNRVNLWRYGDFTEDDAPEFG 5235
P++Q+GI+K +LSG +I+RGQP+GGPPPERQ+ LSNI A LARRAA P+ KD EP A+ RE+LR +LIGKEV F IE K P G+EYG I+ +D +NI E LVAEGL R G + +QN L++ E+ AKAAKKG + +R++++T E+PR+FVD KP+NAIIE VRDGS VRA LLP++ VTVML+GIKCPT RR+ + ET EPFA EAK+FT+ RLLQR++QIILE S QN LG+I+HP GNI ELLLKEGFA+CVDWS+ V T G EK R +ER AKE+++R+W+D+VA + L K+K F KV++V+N DAI+VK+ D K I SS+RPPR + EN ++ K+ RPLYDIPYMFEAREFLRKKLIGKKV+V +DYI+PAS + ER CATVTI INIAEAL+SKGLAT +R+RQDDDQRSS YDELLAAE RA KN KGLHS KE P+HR+AD+SGD K++QFLPFLQRAGRS AVVE+ SGSR +LYLPKETCL+TFLLAGI CPR P Q E EP EA F+KE+ LQREVEV+V+S+DK GNFIGW+ +D N+S+ LVE+ L+K+HFTAERS+Y+K L AE+ AK KK VW + E+ V+E V+E+ ER +YK V VTEIT F+ Q ++ +Q E++ + +R D+ +PP+ GS PRRG+ A F VD WYRAR+EK+E K+H ++DYGNR+V+ +T+L +L F T PAQA EY A ++VP D++ + + S ++ N + LN E+ G VTL +SK D+G L+ G+++ E R+EK+ QK+I+EY AQE A+ R+NLWRYGDF DDA EFG
Sbjct: 17 PTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP-QGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSETPEPFAAEAKFFTESRLLQRDVQIILE---SCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTAN-LDQKDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSSIRPPRLEG------ENTQDKN-KKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQ--EGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFG 907 The following BLAST results are available for this feature:
BLAST of TCONS_00007806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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