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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007805 ID=TCONS_00007805|Name=TCONS_00007805|organism=Clytia hemisphaerica|type=transcript|length=2746bpRun BLAST on NCBI transcript from alignment at sc0000080:71000..107003+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007805 ID=TCONS_00007805|Name=TCONS_00007805|organism=Clytia hemisphaerica|type=transcript|length=36004bp|location=Sequence derived from alignment at sc0000080:71000..107003+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007805 vs. Swiss-Prot (Human)
Match: SUMF1 (Sulfatase-modifying factor 1 OS=Homo sapiens GN=SUMF1 PE=1 SV=3) HSP 1 Score: 372.859 bits (956), Expect = 1.121e-119 Identity = 172/278 (61.87%), Postives = 207/278 (74.46%), Query Frame = 1
Query: 502 FMMGTDDPNNVAITGDGETPARFVGLEPFSLDKFEVSNGEFAEFVQATNFVTEAEKFGNSFVMENFLSKEVSDKITQAVAGAKWWVPVPRAYWRRPEGGDSDVTKDHRMNHPVVHVSWNDAVAFCHWKGKRLPTEAEWEYACRGGKQDRLYPWGNKFQPKGEFRLNIWQGKFPKENTKEDGFASTCPVDQFKQNSFGLYNMVGNVWEWTADWFTTAHPTKPQKNPKGPSHGKDKVKKGGSFMCSKKFCYRYRCSARDKNSADSSSSNLGFRCAKTYIP 1335
F MGTDDP I DGE PAR V ++ F +D +EVSN EF +FV +T ++TEAEKFG+SFV E LS++V I QAVA A WW+PV A WR PEG DS + HR +HPV+HVSWNDAVA+C W GKRLPTEAEWEY+CRGG +RL+PWGNK QPKG+ NIWQG+FP NT EDGF T PVD F N +GLYN+VGN WEWT+DW+T H + NPKGP GKD+VKKGGS+MC + +CYRYRC+AR +N+ DSS+SNLGFRCA +P
Sbjct: 99 FTMGTDDPQ---IKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTIL--HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 371 The following BLAST results are available for this feature:
BLAST of TCONS_00007805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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