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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007801 ID=TCONS_00007801|Name=TCONS_00007801|organism=Clytia hemisphaerica|type=transcript|length=1787bpRun BLAST on NCBI protein sequence of TCONS_00007801-protein >TCONS_00007801-protein ID=TCONS_00007801-protein|Name=TCONS_00007801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp MEDQKDFVEEVLKQMSHSYVHLEMKKSLQNEINKANLYSGDIKKHLKKFLRun BLAST on NCBI transcript from alignment at sc0000080:19692..37962+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007801 ID=TCONS_00007801|Name=TCONS_00007801|organism=Clytia hemisphaerica|type=transcript|length=18271bp|location=Sequence derived from alignment at sc0000080:19692..37962+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:19692..37962+ >TCONS_00007801 ID=TCONS_00007801|Name=TCONS_00007801|organism=Clytia hemisphaerica|type=CDS|length=32571bp|location=Sequence derived from alignment at sc0000080:19692..37962+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007801 vs. Swiss-Prot (Human)
Match: TBC19 (TBC1 domain family member 19 OS=Homo sapiens GN=TBC1D19 PE=1 SV=2) HSP 1 Score: 431.024 bits (1107), Expect = 7.791e-144 Identity = 236/522 (45.21%), Postives = 342/522 (65.52%), Query Frame = 2
Query: 32 EMEDQKDFVEEVLKQMSHSYVHLEMKKSLQNEINKANLYSGDIKKHLKKFLKESGYSVTIQNFIYQR--VLEKYNKRYNSSGAYKEPLEYIEKAQITWQKCIVKSINNMCSELSLPLSRKRNAQDQKVLSQKLENMQLGLEYNDEAYSKLRPVYSSADFFEVLVNIKNPNLVPSTEGNIE-QWGLMQAGLIGSN--DIKSELELLNGKTPQVGIDDVLNAS---FASEWIAVGQKVIAQRHIAASRQYLKQGCPSGLRKDIWRTFFNIDITNESIHYYERLKGKVLEYDMLVDYLIMKDVRLTATNDDAFFVFEDVLHQVMLVFSRDTWMIDQFHHFSNQPPKSYVRGRLGLEEYSVNYPPCGIFPFHGFSMLAAPLCYIFEKPVELFFVFRQLYSRYFYQLYDISSHPESIVSLCSFFEERLQLDEPQVFKHLLEIKAQPLRIVFSWFLFAFSGYLATDQTLQLWERVLGFDSLRXXXXXXXXXXSYRRENLLGVTTKASAEAVLADISTIKVIPVLVQYL 1573
E D + ++++++ S ++ ++++ + + + +K+ +K+F K SG+ +QN +Y V + KEPL Y+ KAQ +W+K I+KS+N+MC+ELS+PL+RKR +QK L K M G + D S RPVY+ DF EVL+N++NPN + GL+Q L + ++K L Q+GIDD F +E + +GQKV+A++ AA++QY++QG P+ LR ++W NI E + YYE+LK V+++D+LVD LI KDV+LTA+NDD +FVFED L+QV+L FSRDT ++ F S PPKSY+RG+LGLEEY+V YPP G+ PFHGFSM APLC+++ +P +L+ +FR++Y R+F++L+ ISSHP IVSLC FE LQ PQ+F HL EI AQPLRI F W + AFSGYLATDQ L LW+R+LG++SL +LAVLA A+ ++R NL+ VT+ A+AEAVLAD+ST+KV+P+L +L
Sbjct: 4 EESDLSLIIAQIVQKLKGSNLYSQLERQAWASLQRPEIKLESLKEDIKEFFKISGWEKKLQNAVYSELSVFPLPSHPAAPPEHLKEPLVYMRKAQGSWEKRILKSLNSMCTELSIPLARKRPVGEQKELLNKWNEM--GTDEPD--LSLFRPVYAPKDFLEVLINLRNPNYENGDSLSFRTHLGLIQVPLKVKDIPELKECFVELGLNIGQLGIDDSTQVPPELFENEHVRIGQKVLAEQDSAAAQQYIRQGSPTALRAELWALILNISSQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVKLTASNDDYYFVFEDYLYQVLLCFSRDTSVLSHFAFNSASPPKSYIRGKLGLEEYAVFYPPNGVIPFHGFSMYVAPLCFLYHEPSKLYQIFREMYVRFFFRLHSISSHPSGIVSLCLLFETLLQTYLPQLFYHLREIGAQPLRISFKWMVRAFSGYLATDQLLLLWDRILGYNSLEILAVLAAAVFAFRAVNLMEVTSLAAAEAVLADLSTLKVMPLLQIFL 521 The following BLAST results are available for this feature:
BLAST of TCONS_00007801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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