TCONS_00007781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007781
Unique NameTCONS_00007781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007781 ID=TCONS_00007781|Name=TCONS_00007781|organism=Clytia hemisphaerica|type=transcript|length=533bp
CTGGGATTTCTACTTCAATTTAAAACCTTTTGTTGAGGCTAGGGGAGAAG
TTCTGTTTTGGGAAAAGAATattgagaaattaaatttcagAGACATTTTC
GTCAATGAGATTccttttatgaaagttttttcagatgCAAGTAACAAGGG
AATTGGGGCAATCTCGGGCTCAGATATCAGCTTTAGAAATTTATGGCCTC
ATGAGCAGAGTGAAAGTTCAACTTACAGAGAACTACTAGTAATTGCTTTC
ACGTTGAGTGCTTTTGATAGAAAGCTCCAAGGGAATAATGTTCTTTGGCA
TACAGGCAACATGGCAGCAGCTAGGATCGTTAAGGTAGGAAGCAACAAGG
AGTTACTTCAATACTTGCTATTTATGATATTTGCAAGGAAAagggatttt
tttgaaaataacctGGTTCGCCAGAGAATCAAACAAGACGGCTGACGTAG
TAAGCAAATCTGTAGATTATGATGACTGGGGCATtacaattcaatttttc
tctcttttacaGACTCGTTGGGGCCTCTTTTCC
Run BLAST on NCBI

protein sequence of TCONS_00007781-protein

>TCONS_00007781-protein ID=TCONS_00007781-protein|Name=TCONS_00007781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
WDFYFNLKPFVEARGEVLFWEKNIEKLNFRDIFVNEIPFMKVFSDASNKG
IGAISGSDISFRNLWPHEQSESSTYRELLVIAFTLSAFDRKLQGNNVLWH
TGNMAAARIVKVGSNKELLQYLLFMIFARKRDFFENNLVRQRIKQDG
Run BLAST on NCBI

transcript from alignment at sc0000079:719089..719621

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007781 ID=TCONS_00007781|Name=TCONS_00007781|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000079:719089..719621 (Clytia hemisphaerica)
GGAAAAGAGGCCCCAACGAGTCtgtaaaagagagaaaaattgaattgtaA
TGCCCCAGTCATCATAATCTACAGATTTGCTTACTACGTCAGCCGTCTTG
TTTGATTCTCTGGCGAACCaggttattttcaaaaaaatccctTTTCCTTG
CAAATATCATAAATAGCAAGTATTGAAGTAACTCCTTGTTGCTTCCTACC
TTAACGATCCTAGCTGCTGCCATGTTGCCTGTATGCCAAAGAACATTATT
CCCTTGGAGCTTTCTATCAAAAGCACTCAACGTGAAAGCAATTACTAGTA
GTTCTCTGTAAGTTGAACTTTCACTCTGCTCATGAGGCCATAAATTTCTA
AAGCTGATATCTGAGCCCGAGATTGCCCCAATTCCCTTGTTACTTGcatc
tgaaaaaactttcataaaaggAATCTCATTGACGAAAATGTCTctgaaat
ttaatttctcaatATTCTTTTCCCAAAACAGAACTTCTCCCCTAGCCTCA
ACAAAAGGTTTTAAATTGAAGTAGAAATCCCAG

Coding sequence (CDS) from alignment at sc0000079:719089..719621

>TCONS_00007781 ID=TCONS_00007781|Name=TCONS_00007781|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000079:719089..719621 (Clytia hemisphaerica)
TCAGCCGTCTTGTTTGATTCTCTGGCGAACCaggttattttcaaaaaaat
ccctTTTCCTTGCAAATATCATAAATAGCAAGTATTGAAGTAACTCCTTG
TTGCTTCCTACCTTAACGATCCTAGCTGCTGCCATGTTGCCTGTATGCCA
AAGAACATTATTCCCTTGGAGCTTTCTATCAAAAGCACTCAACGTGAAAG
CAATTACTAGTAGTTCTCTGTAAGTTGAACTTTCACTCTGCTCATGAGGC
CATAAATTTCTAAAGCTGATATCTGAGCCCGAGATTGCCCCAATTCCCTT
GTTACTTGcatctgaaaaaactttcataaaaggAATCTCATTGACGAAAA
TGTCTctgaaatttaatttctcaatATTCTTTTCCCAAAACAGAACTTCT
CCCCTAGCCTCAACAAAAGGTTTTAAATTGAAGTAGAAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004428XLOC_004428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007781-proteinTCONS_00007781-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007781-exon-sc0000079-1491911889:719089..719621TCONS_00007781-exon-sc0000079-1491911889:719089..719621Clytia hemisphaericaexon
TCONS_00007781-exon-sc0000079-1510915933:719089..719621TCONS_00007781-exon-sc0000079-1510915933:719089..719621Clytia hemisphaericaexon
TCONS_00007781-exon-sc0000079-1575043694:719089..719621TCONS_00007781-exon-sc0000079-1575043694:719089..719621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:719089..719621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547496	0.640674	0.991845	0.970365	0.295332	0	0.140779	0.395385	0.369092	0.114295	0	0.0729259	0.145649	0.453774	0	0.133451	0	0.084253	0	0	0	0.154919	2.88764	0.913143	0.352693	0.419694	0	0.160239	1.82303	1.23826
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top