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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007778 ID=TCONS_00007778|Name=TCONS_00007778|organism=Clytia hemisphaerica|type=transcript|length=1590bp
AAAAAACTACGGATGAAGTTGAGAAAATGTTGAAGGAAagataaagtttc
aaaaaaaaaatggaaaacttAAGAAAAGAAATACTAGCTTTGAAACCAAA
ATATATCGACGCTACAAAATGCAACAACTCGAAATCTTTATTTGAACAGA
TTGCAAGAACGAAAGAAGAAAGACTCGCGGATCAAGTTACGCAATTCCAA
CTCGGAAATGGCCACCAATTCACTGAGCCCTTAAAGGCAGCTGAATATCT
CTTGGAAAGGGAATATGACGAAACCTTTCTATTCGATCATATCAACCACA
AGGAGGCTATTTTTATTCCACCCGAAATGATTTCAAATCAATATCGAAAA
AATTCACCAGTGCTGGACTTTAACATTGAAAGTACTGTTACCAAAAGTTT
ACAAAATCTCAAAGAGAACTCACCTGGACATTGGTTTACCAAGGATTTGG
ACGAGTTTCTAAAAACGCCTATTTTTGGAGAGATAACGAGATCGACTATG
GGTATTTATAAGAGGGACTTTAACAATTGGGTTTTAAAGGTGAAAATCAA
ATACCTGACATTGAGAGAACTTGGGACTAATGAAATAAATTTACCGTCAA
CTTTGGACTTTCAAAACCTCAAACAACAATGTATTAATGAAATCAACAAA
GTTAAACCAGATTCTAACTTAGTAGCCAAACTCGATGACGCCCAGAGACT
GAAAAACGAAATAAGGACACTGATTCAAGCTGACCCACCTATATCTATAA
TATTGAAATGGTTCTTTGATTTACAGCTGTCAGAGTGTGGAGAGTTCGTC
GAGCGCAAATTGTTTGAAGAATTAATCGCTTTAAAAGGGGATATTATTCT
TCAGGATTTAGTAGTTTTGCGATCAGCGATTTTTAAGACCAATGTAACAA
ATAAGAAACACCAAGAATGTGATTTTCTCATCTTCTCGAGGTCAAAAAAG
CTAATTATTGGAATCGAAGTTAAAACACAATTGACCGGCAACACCAAGGT
GTTTGAGCAATTAGAAAGATATCGTAGTATATTTGAAGAAAGATTGGGTG
ATCAGCTTGGACACGGCTGGGCATTTTTTCCAGTAATTTACATTGATTAT
GCTTATTGTTATCCTTTCTGTGATAAAGAGTTATCATTTGAAAGTCGACA
TTTCATAAACAGTGCGACGGACATTAAGAAATGGTTATCAAGTGTACTGC
ATTCCGTCCCCACAGTTCCGTTTCAGTCACCTTTGATTCAACCTACCGAA
CAGCTGAAAAATATACTGAAAATCATCATCTTCACCATTCACGTCTCCAA
AAAAGACATACCGAAACCGATTACGTCATCATGCTGGGTTGATTACGTAA
GCGATGTAATCGAGACTTTATCAACGAGTCAAAACATTCTTTTCTATTCG
AAAAAACAGTATGATATTCTGACAAGCAACGATCCCGCCTATCGAAAACT
TATCCTCTTGGGTGGCTATGGGACAGGAAAATCACTCTTACTTCAAGATA
AAGCTATAATGATGAGTAAAAACAAAGAATACCATGGCCGGATTTTATAT
TGGATATATAATGAATGGCACGGAGCAGGATCAGCCGGGA Run BLAST on NCBI protein sequence of TCONS_00007778-protein >TCONS_00007778-protein ID=TCONS_00007778-protein|Name=TCONS_00007778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MENLRKEILALKPKYIDATKCNNSKSLFEQIARTKEERLADQVTQFQLGN
GHQFTEPLKAAEYLLEREYDETFLFDHINHKEAIFIPPEMISNQYRKNSP
VLDFNIESTVTKSLQNLKENSPGHWFTKDLDEFLKTPIFGEITRSTMGIY
KRDFNNWVLKVKIKYLTLRELGTNEINLPSTLDFQNLKQQCINEINKVKP
DSNLVAKLDDAQRLKNEIRTLIQADPPISIILKWFFDLQLSECGEFVERK
LFEELIALKGDIILQDLVVLRSAIFKTNVTNKKHQECDFLIFSRSKKLII
GIEVKTQLTGNTKVFEQLERYRSIFEERLGDQLGHGWAFFPVIYIDYAYC
YPFCDKELSFESRHFINSATDIKKWLSSVLHSVPTVPFQSPLIQPTEQLK
NILKIIIFTIHVSKKDIPKPITSSCWVDYVSDVIETLSTSQNILFYSKKQ
YDILTSNDPAYRKLILLGGYGTGKSLLLQDKAIMMSKNKEYHGRILYWIY
NEWHGAGSAG Run BLAST on NCBI transcript from alignment at sc0000079:650714..652303 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007778 ID=TCONS_00007778|Name=TCONS_00007778|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at sc0000079:650714..652303 (Clytia hemisphaerica)
TCCCGGCTGATCCTGCTCCGTGCCATTCATTATATATCCAATATAAAATC
CGGCCATGGTATTCTTTGTTTTTACTCATCATTATAGCTTTATCTTGAAG
TAAGAGTGATTTTCCTGTCCCATAGCCACCCAAGAGGATAAGTTTTCGAT
AGGCGGGATCGTTGCTTGTCAGAATATCATACTGTTTTTTCGAATAGAAA
AGAATGTTTTGACTCGTTGATAAAGTCTCGATTACATCGCTTACGTAATC
AACCCAGCATGATGACGTAATCGGTTTCGGTATGTCTTTTTTGGAGACGT
GAATGGTGAAGATGATGATTTTCAGTATATTTTTCAGCTGTTCGGTAGGT
TGAATCAAAGGTGACTGAAACGGAACTGTGGGGACGGAATGCAGTACACT
TGATAACCATTTCTTAATGTCCGTCGCACTGTTTATGAAATGTCGACTTT
CAAATGATAACTCTTTATCACAGAAAGGATAACAATAAGCATAATCAATG
TAAATTACTGGAAAAAATGCCCAGCCGTGTCCAAGCTGATCACCCAATCT
TTCTTCAAATATACTACGATATCTTTCTAATTGCTCAAACACCTTGGTGT
TGCCGGTCAATTGTGTTTTAACTTCGATTCCAATAATTAGCTTTTTTGAC
CTCGAGAAGATGAGAAAATCACATTCTTGGTGTTTCTTATTTGTTACATT
GGTCTTAAAAATCGCTGATCGCAAAACTACTAAATCCTGAAGAATAATAT
CCCCTTTTAAAGCGATTAATTCTTCAAACAATTTGCGCTCGACGAACTCT
CCACACTCTGACAGCTGTAAATCAAAGAACCATTTCAATATTATAGATAT
AGGTGGGTCAGCTTGAATCAGTGTCCTTATTTCGTTTTTCAGTCTCTGGG
CGTCATCGAGTTTGGCTACTAAGTTAGAATCTGGTTTAACTTTGTTGATT
TCATTAATACATTGTTGTTTGAGGTTTTGAAAGTCCAAAGTTGACGGTAA
ATTTATTTCATTAGTCCCAAGTTCTCTCAATGTCAGGTATTTGATTTTCA
CCTTTAAAACCCAATTGTTAAAGTCCCTCTTATAAATACCCATAGTCGAT
CTCGTTATCTCTCCAAAAATAGGCGTTTTTAGAAACTCGTCCAAATCCTT
GGTAAACCAATGTCCAGGTGAGTTCTCTTTGAGATTTTGTAAACTTTTGG
TAACAGTACTTTCAATGTTAAAGTCCAGCACTGGTGAATTTTTTCGATAT
TGATTTGAAATCATTTCGGGTGGAATAAAAATAGCCTCCTTGTGGTTGAT
ATGATCGAATAGAAAGGTTTCGTCATATTCCCTTTCCAAGAGATATTCAG
CTGCCTTTAAGGGCTCAGTGAATTGGTGGCCATTTCCGAGTTGGAATTGC
GTAACTTGATCCGCGAGTCTTTCTTCTTTCGTTCTTGCAATCTGTTCAAA
TAAAGATTTCGAGTTGTTGCATTTTGTAGCGTCGATATATTTTGGTTTCA
AAGCTAGTATTTCTTTTCTTaagttttccattttttttttgaaactttat
ctTTCCTTCAACATTTTCTCAACTTCATCCGTAGTTTTTT Coding sequence (CDS) from alignment at sc0000079:650714..652303 >TCONS_00007778 ID=TCONS_00007778|Name=TCONS_00007778|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000079:650714..652303 (Clytia hemisphaerica)
CCCGGCTGATCCTGCTCCGTGCCATTCATTATATATCCAATATAAAATCC
GGCCATGGTATTCTTTGTTTTTACTCATCATTATAGCTTTATCTTGAAGT
AAGAGTGATTTTCCTGTCCCATAGCCACCCAAGAGGATAAGTTTTCGATA
GGCGGGATCGTTGCTTGTCAGAATATCATACTGTTTTTTCGAATAGAAAA
GAATGTTTTGACTCGTTGATAAAGTCTCGATTACATCGCTTACGTAATCA
ACCCAGCATGATGACGTAATCGGTTTCGGTATGTCTTTTTTGGAGACGTG
AATGGTGAAGATGATGATTTTCAGTATATTTTTCAGCTGTTCGGTAGGTT
GAATCAAAGGTGACTGAAACGGAACTGTGGGGACGGAATGCAGTACACTT
GATAACCATTTCTTAATGTCCGTCGCACTGTTTATGAAATGTCGACTTTC
AAATGATAACTCTTTATCACAGAAAGGATAACAATAAGCATAATCAATGT
AAATTACTGGAAAAAATGCCCAGCCGTGTCCAAGCTGATCACCCAATCTT
TCTTCAAATATACTACGATATCTTTCTAATTGCTCAAACACCTTGGTGTT
GCCGGTCAATTGTGTTTTAACTTCGATTCCAATAATTAGCTTTTTTGACC
TCGAGAAGATGAGAAAATCACATTCTTGGTGTTTCTTATTTGTTACATTG
GTCTTAAAAATCGCTGATCGCAAAACTACTAAATCCTGAAGAATAATATC
CCCTTTTAAAGCGATTAATTCTTCAAACAATTTGCGCTCGACGAACTCTC
CACACTCTGACAGCTGTAAATCAAAGAACCATTTCAATATTATAGATATA
GGTGGGTCAGCTTGAATCAGTGTCCTTATTTCGTTTTTCAGTCTCTGGGC
GTCATCGAGTTTGGCTACTAAGTTAGAATCTGGTTTAACTTTGTTGATTT
CATTAATACATTGTTGTTTGAGGTTTTGAAAGTCCAAAGTTGACGGTAAA
TTTATTTCATTAGTCCCAAGTTCTCTCAATGTCAGGTATTTGATTTTCAC
CTTTAAAACCCAATTGTTAAAGTCCCTCTTATAAATACCCATAGTCGATC
TCGTTATCTCTCCAAAAATAGGCGTTTTTAGAAACTCGTCCAAATCCTTG
GTAAACCAATGTCCAGGTGAGTTCTCTTTGAGATTTTGTAAACTTTTGGT
AACAGTACTTTCAATGTTAAAGTCCAGCACTGGTGAATTTTTTCGATATT
GATTTGAAATCATTTCGGGTGGAATAAAAATAGCCTCCTTGTGGTTGATA
TGATCGAATAGAAAGGTTTCGTCATATTCCCTTTCCAAGAGATATTCAGC
TGCCTTTAAGGGCTCAGTGAATTGGTGGCCATTTCCGAGTTGGAATTGCG
TAACTTGATCCGCGAGTCTTTCTTCTTTCGTTCTTGCAATCTGTTCAAAT
AAAGATTTCGAGTTGTTGCATTTTGTAGCGTCGATATATTTTGGTTTCAA
AGCTAGTATTTCTTTTCTTaagttttccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007778-exon-sc0000079-1491911889:650714..652303 | TCONS_00007778-exon-sc0000079-1491911889:650714..652303 | Clytia hemisphaerica | exon |
| TCONS_00007778-exon-sc0000079-1510915933:650714..652303 | TCONS_00007778-exon-sc0000079-1510915933:650714..652303 | Clytia hemisphaerica | exon |
| TCONS_00007778-exon-sc0000079-1575043694:650714..652303 | TCONS_00007778-exon-sc0000079-1575043694:650714..652303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:650714..652303 . |
Blast
The following BLAST results are available for this feature:
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