TCONS_00007773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007773
Unique NameTCONS_00007773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007773 ID=TCONS_00007773|Name=TCONS_00007773|organism=Clytia hemisphaerica|type=transcript|length=461bp
TACGGCTGCATCGTAGATAGCAGAGAATTCAGGATGGTTGTTCATCAATA
TGGTGTGAGTCGTGTAGTCAGATGTTGATGGATTTGCGATAAGTTGCTTC
AGGAGGGAGATTTTCCGCttttcaacaagttttgatACGTCCGGAATATG
GTAGGCACGGTGGAGATGGTTTTTACTGTTTCTGGATACACCAAATAGGG
ACTTGAGACAGGACCGTGCTGCCACATTCAATTGGTTTGTTTCGGTTTTA
GTCAGATCACAGAGTTCTAATCCATATAAAAGCTTAGGTAAGATGATATG
ATTAAATATGGTAACGATTGAGTTAGGGTGACAATGCCTCAATCCTGCAG
AAATGAGTGAGGTAGTAGTTGACCACATTTCAGAAATACGATTGTCTTTG
TGAGATTTGAGACTGATGTGGTTACGGTGTTTTGTCCAATGGAATCCAAG
GTGGATAAGAT
Run BLAST on NCBI

protein sequence of TCONS_00007773-protein

>TCONS_00007773-protein ID=TCONS_00007773-protein|Name=TCONS_00007773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
LIHLGFHWTKHRNHISLKSHKDNRISEMWSTTTSLISAGLRHCHPNSIVT
IFNHIILPKLLYGLELCDLTKTETNQLNVAARSCLKSLFGVSRNSKNHLH
RAYHIPDVSKLVEKRKISLLKQLIANPSTSDYTTHTILMNNHPEFSAIYD
AAV
Run BLAST on NCBI

transcript from alignment at sc0000079:612915..613375

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007773 ID=TCONS_00007773|Name=TCONS_00007773|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000079:612915..613375 (Clytia hemisphaerica)
ATCTTATCCACCTTGGATTCCATTGGACAAAACACCGTAACCACATCAGT
CTCAAATCTCACAAAGACAATCGTATTTCTGAAATGTGGTCAACTACTAC
CTCACTCATTTCTGCAGGATTGAGGCATTGTCACCCTAACTCAATCGTTA
CCATATTTAATCATATCATCTTACCTAAGCTTTTATATGGATTAGAACTC
TGTGATCTGACTAAAACCGAAACAAACCAATTGAATGTGGCAGCACGGTC
CTGTCTCAAGTCCCTATTTGGTGTATCCAGAAACAGTAAAAACCATCTCC
ACCGTGCCTACCATATTCCGGACGTatcaaaacttgttgaaaaGCGGAAA
ATCTCCCTCCTGAAGCAACTTATCGCAAATCCATCAACATCTGACTACAC
GACTCACACCATATTGATGAACAACCATCCTGAATTCTCTGCTATCTACG
ATGCAGCCGTA

Coding sequence (CDS) from alignment at sc0000079:612915..613375

>TCONS_00007773 ID=TCONS_00007773|Name=TCONS_00007773|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000079:612915..613375 (Clytia hemisphaerica)
CTTATCCACCTTGGATTCCATTGGACAAAACACCGTAACCACATCAGTCT
CAAATCTCACAAAGACAATCGTATTTCTGAAATGTGGTCAACTACTACCT
CACTCATTTCTGCAGGATTGAGGCATTGTCACCCTAACTCAATCGTTACC
ATATTTAATCATATCATCTTACCTAAGCTTTTATATGGATTAGAACTCTG
TGATCTGACTAAAACCGAAACAAACCAATTGAATGTGGCAGCACGGTCCT
GTCTCAAGTCCCTATTTGGTGTATCCAGAAACAGTAAAAACCATCTCCAC
CGTGCCTACCATATTCCGGACGTatcaaaacttgttgaaaaGCGGAAAAT
CTCCCTCCTGAAGCAACTTATCGCAAATCCATCAACATCTGACTACACGA
CTCACACCATATTGATGAACAACCATCCTGAATTCTCTGCTATCTACGAT
GCAGCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004420XLOC_004420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007773-exon-sc0000079-1491911889:612915..613375TCONS_00007773-exon-sc0000079-1491911889:612915..613375Clytia hemisphaericaexon
TCONS_00007773-exon-sc0000079-1510915933:612915..613375TCONS_00007773-exon-sc0000079-1510915933:612915..613375Clytia hemisphaericaexon
TCONS_00007773-exon-sc0000079-1575043694:612915..613375TCONS_00007773-exon-sc0000079-1575043694:612915..613375Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007773-proteinTCONS_00007773-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:612915..613375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.189856	0	0.181001	0.169451	0	0	0	0.187524	0.187263	0	0.159884	0	0	0	0	0	0	0	0	0	0	0.539606	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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