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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007772 ID=TCONS_00007772|Name=TCONS_00007772|organism=Clytia hemisphaerica|type=transcript|length=2498bp
GAAATCTGGTTCCTTTGTATCAAGAGCAGTCAGATTTTCAAGAAGCGTTT
TGTTTGAGATAGAGTTGTTGAAACCTGTTACCCGGGGCGTGTTAAGTAGA
TTATCGAAGTGTTCTTTGAATTCAGTGGTAATATCATCTTTGTTGGTTTT
GCCATTAATCGTATACAGTTTTTGAGAAGAGCTTTTTAAAGCTTGCATTT
GGTTCCAGTAAGTTTTTGGTTTGACGTTTTTGAGCTTGTCTACACAGACG
AAATGATCAATTGTTGATTTATGTTTTGCACGTTTAACAAGAGTACGAAA
CCTTTTACGGGCAAACTTGTAGCGATTATATGAAATGCTGGATGGGTCTT
TCGTAAAGCAGTCAGACTTCCAGAGATTAAACATTTGTTGTAATGTGTTA
CGTGCTGTACCGAGTTCATTGTTCCACCAACGTTTTGGAGAAAagttata
aaatgttttctcaatCTCAGTGTATGCAGAGCCTGCTGAGTGTTGAAGGA
TAAGATGTAGATTGTCCAATTGGGATTGGGGGTCTCCATCAACATAGTTT
TCGAGACTTCCAGTAACTTTCTGGTGGTATAGATTTAGAAATTTCTCATT
CTTCCAAATGTAATTTGGTACaaagtcattttctatttcagGCTGTTGGG
TCACAGATTCTGGACTATCTGGTAAACGAAAGGTAGCGGAGACAGGTATG
TGATCCCCAGTGTTATCCGGGTGTGGATCAACAACATGAGTGTCTGTAAC
GTAATCGGAGAGCGTAGATGGAATCAAGATGTGATCAATGTAGGACTGGT
TCGGAAGTGTCAAATGTTGATAGGTGTAACAAGGGCCATAACCATGAGTC
ATGTCTACTGGTAATAGATTGTTCTCTGTCATGAACTTTGAGAGGTGCAG
TGAGAGGGCATTTGGTGGGCTAGATCGAGTACAGTTTTGCCATTTTGGAC
AGCACTGGAGGTCCCCTAGGATGATTGGATCTGCCAAATGGTTAAATTGA
TCAATGGTGCCTGAGATGCAAGCGAGTTGACTCTTATAGGTTTCGATACA
GTCTTGTTTGCCATTCAGGGATTGCAGGTATAAAGCTGATATGATGAGGT
TACTTTGATGGTGGGATGCTTTTACAACGGTTGCATAGTCCTCCAGAATG
AGAGTTTCAGGTTTTTGGAAACAGTCTCTATGGAGCAGTAAAACGTTGCC
GCCGTAAGGTCGACcaaattgttgttgttttgcaGGTTCAGATATAACGT
AAAAGTTCTGTTTGTAAGGGAAGAGATTTCGTTAACCAAGTCTCACAAAG
AAATATGCAGTCATGAGTTTTAGTTAAATTGTTTATATATACAGTATTGG
CTTTGAGACCATAACAATTGAATGTGATAATTTTGAGGTCGTGTCTAGCA
GTCATCATAGCGGTTGCGGTTTAGAGTGTCCTGAGCGGGATAATGGTTGT
TGTGGTGAATCCTGTTGTTGTGCTGTCCTTGCTGAGAGGGATCTGTTCTG
CGTGgaaatttaaatggtttaaTGCAGAGGCCCTGAAGCCAGCGGTTTGA
CTCAAAAGCCTTTTTTCTATCGTTCATATCAATGTCTACTCTGAATGACT
GATTGAAGGAATTGGTGTGATGAGATTGAACATAAAGTACTTTGAGGCCG
GCATCATCACGAACAACAGATCCAACTTGCTCTGGGGTTACTTTGGGGTC
GAAACCACCCACAAAAAGTGAAAACGGTTTTGTTCTACCAGCAATGTTTT
TAGCCTTGGTTGTGCTCTTTGTTCCAAAAATTGGGGCGTTTCTATTGGCG
GTGTGGTTGTTGCGAGGTTCAGGGGTACGTAAATCGATCTTGTCATGGGG
GTTAGCGGTATCAGATTTTTGCTTGGAGGTATCAGATGCTTGGAGGATGC
TTTGCTTGGAGGTATCAGATTTTCGCTTGGGGTATTTAGAATGTCTCTGT
ACGATGGAACTGACACCGGTGGAAGGTGTTGTCGAGGTAGGAAACTCCAT
TTCATTTGATGTGGTGTTGGTGGTGAATTGTCAAAAGGAATCGATCCAAG
AGGACCACCCTGATGTGATTCTTTTGGTAGCATGAAAGGACGGTCTTGAC
GGTCAACTTCATGTTGTTGGGGTTGTTGCATTCTAAGGAGCTCGGCTATG
TTTTCAAGTTTGTTCTCAATAGTGGTCAGTCTATTTTTGAGATCATGATT
CTCATTATAGAGGTTAGTGTTAGTGGTACACAGTTCTTGCATCTTTTCCA
GCATGAGTTTCATATCTGCTGAGCTTATCGTTGTGAAGGAAGCGGATTGT
TTTGGAGGATTCTTGAGAATCTCTGAAGCCAAATGTGTACCAATTTTGGA
CTCATGAACACTGAGACCCATGTCGTAGATGTCCTGGGCAGCAAGTTGTG
GAGTTCTTCTAACTTTGAGTAAGTTTCTAATGTTCTTTTTATCACCGGGA
ATATTAAAACCATGCTGAGAAAGTTTATTGTTATCATGTTTAAAGTAA Run BLAST on NCBI protein sequence of TCONS_00007772-protein >TCONS_00007772-protein ID=TCONS_00007772-protein|Name=TCONS_00007772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MTENNLLPVDMTHGYGPCYTYQHLTLPNQSYIDHILIPSTLSDYVTDTHV
VDPHPDNTGDHIPVSATFRLPDSPESVTQQPEIENDFVPNYIWKNEKFLN
LYHQKVTGSLENYVDGDPQSQLDNLHLILQHSAGSAYTEIEKTFYNFSPK
RWWNNELGTARNTLQQMFNLWKSDCFTKDPSSISYNRYKFARKRFRTLVK
RAKHKSTIDHFVCVDKLKNVKPKTYWNQMQALKSSSQKLYTINGKTNKDD
ITTEFKEHFDNLLNTPRVTGFNNSISNKTLLENLTALDTKEPDF Run BLAST on NCBI transcript from alignment at sc0000079:610234..612731 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007772 ID=TCONS_00007772|Name=TCONS_00007772|organism=Clytia hemisphaerica|type=transcript|length=2498bp|location=Sequence derived from alignment at sc0000079:610234..612731 (Clytia hemisphaerica)
TTACTTTAAACATGATAACAATAAACTTTCTCAGCATGGTTTTAATATTC
CCGGTGATAAAAAGAACATTAGAAACTTACTCAAAGTTAGAAGAACTCCA
CAACTTGCTGCCCAGGACATCTACGACATGGGTCTCAGTGTTCATGAGTC
CAAAATTGGTACACATTTGGCTTCAGAGATTCTCAAGAATCCTCCAAAAC
AATCCGCTTCCTTCACAACGATAAGCTCAGCAGATATGAAACTCATGCTG
GAAAAGATGCAAGAACTGTGTACCACTAACACTAACCTCTATAATGAGAA
TCATGATCTCAAAAATAGACTGACCACTATTGAGAACAAACTTGAAAACA
TAGCCGAGCTCCTTAGAATGCAACAACCCCAACAACATGAAGTTGACCGT
CAAGACCGTCCTTTCATGCTACCAAAAGAATCACATCAGGGTGGTCCTCT
TGGATCGATTCCTTTTGACAATTCACCACCAACACCACATCAAATGAAAT
GGAGTTTCCTACCTCGACAACACCTTCCACCGGTGTCAGTTCCATCGTAC
AGAGACATTCTAAATACCCCAAGCGAAAATCTGATACCTCCAAGCAAAGC
ATCCTCCAAGCATCTGATACCTCCAAGCAAAAATCTGATACCGCTAACCC
CCATGACAAGATCGATTTACGTACCCCTGAACCTCGCAACAACCACACCG
CCAATAGAAACGCCCCAATTTTTGGAACAAAGAGCACAACCAAGGCTAAA
AACATTGCTGGTAGAACAAAACCGTTTTCACTTTTTGTGGGTGGTTTCGA
CCCCAAAGTAACCCCAGAGCAAGTTGGATCTGTTGTTCGTGATGATGCCG
GCCTCAAAGTACTTTATGTTCAATCTCATCACACCAATTCCTTCAATCAG
TCATTCAGAGTAGACATTGATATGAACGATAGAAAAAAGGCTTTTGAGTC
AAACCGCTGGCTTCAGGGCCTCTGCAttaaaccatttaaatttcCACGCA
GAACAGATCCCTCTCAGCAAGGACAGCACAACAACAGGATTCACCACAAC
AACCATTATCCCGCTCAGGACACTCTAAACCGCAACCGCTATGATGACTG
CTAGACACGACCTCAAAATTATCACATTCAATTGTTATGGTCTCAAAGCC
AATACTGTATATATAAACAATTTAACTAAAACTCATGACTGCATATTTCT
TTGTGAGACTTGGTTAACGAAATCTCTTCCCTTACAAACAGAACTTTTAC
GTTATATCTGAACCtgcaaaacaacaacaatttgGTCGACCTTACGGCGG
CAACGTTTTACTGCTCCATAGAGACTGTTTCCAAAAACCTGAAACTCTCA
TTCTGGAGGACTATGCAACCGTTGTAAAAGCATCCCACCATCAAAGTAAC
CTCATCATATCAGCTTTATACCTGCAATCCCTGAATGGCAAACAAGACTG
TATCGAAACCTATAAGAGTCAACTCGCTTGCATCTCAGGCACCATTGATC
AATTTAACCATTTGGCAGATCCAATCATCCTAGGGGACCTCCAGTGCTGT
CCAAAATGGCAAAACTGTACTCGATCTAGCCCACCAAATGCCCTCTCACT
GCACCTCTCAAAGTTCATGACAGAGAACAATCTATTACCAGTAGACATGA
CTCATGGTTATGGCCCTTGTTACACCTATCAACATTTGACACTTCCGAAC
CAGTCCTACATTGATCACATCTTGATTCCATCTACGCTCTCCGATTACGT
TACAGACACTCATGTTGTTGATCCACACCCGGATAACACTGGGGATCACA
TACCTGTCTCCGCTACCTTTCGTTTACCAGATAGTCCAGAATCTGTGACC
CAACAGCctgaaatagaaaatgactttGTACCAAATTACATTTGGAAGAA
TGAGAAATTTCTAAATCTATACCACCAGAAAGTTACTGGAAGTCTCGAAA
ACTATGTTGATGGAGACCCCCAATCCCAATTGGACAATCTACATCTTATC
CTTCAACACTCAGCAGGCTCTGCATACACTGAGattgagaaaacatttta
taactTTTCTCCAAAACGTTGGTGGAACAATGAACTCGGTACAGCACGTA
ACACATTACAACAAATGTTTAATCTCTGGAAGTCTGACTGCTTTACGAAA
GACCCATCCAGCATTTCATATAATCGCTACAAGTTTGCCCGTAAAAGGTT
TCGTACTCTTGTTAAACGTGCAAAACATAAATCAACAATTGATCATTTCG
TCTGTGTAGACAAGCTCAAAAACGTCAAACCAAAAACTTACTGGAACCAA
ATGCAAGCTTTAAAAAGCTCTTCTCAAAAACTGTATACGATTAATGGCAA
AACCAACAAAGATGATATTACCACTGAATTCAAAGAACACTTCGATAATC
TACTTAACACGCCCCGGGTAACAGGTTTCAACAACTCTATCTCAAACAAA
ACGCTTCTTGAAAATCTGACTGCTCTTGATACAAAGGAACCAGATTTC Coding sequence (CDS) from alignment at sc0000079:610234..612731 >TCONS_00007772 ID=TCONS_00007772|Name=TCONS_00007772|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000079:610234..612731 (Clytia hemisphaerica)
ATGACAGAGAACAATCTATTACCAGTAGACATGACTCATGGTTATGGCCC
TTGTTACACCTATCAACATTTGACACTTCCGAACCAGTCCTACATTGATC
ACATCTTGATTCCATCTACGCTCTCCGATTACGTTACAGACACTCATGTT
GTTGATCCACACCCGGATAACACTGGGGATCACATACCTGTCTCCGCTAC
CTTTCGTTTACCAGATAGTCCAGAATCTGTGACCCAACAGCctgaaatag
aaaatgactttGTACCAAATTACATTTGGAAGAATGAGAAATTTCTAAAT
CTATACCACCAGAAAGTTACTGGAAGTCTCGAAAACTATGTTGATGGAGA
CCCCCAATCCCAATTGGACAATCTACATCTTATCCTTCAACACTCAGCAG
GCTCTGCATACACTGAGattgagaaaacattttataactTTTCTCCAAAA
CGTTGGTGGAACAATGAACTCGGTACAGCACGTAACACATTACAACAAAT
GTTTAATCTCTGGAAGTCTGACTGCTTTACGAAAGACCCATCCAGCATTT
CATATAATCGCTACAAGTTTGCCCGTAAAAGGTTTCGTACTCTTGTTAAA
CGTGCAAAACATAAATCAACAATTGATCATTTCGTCTGTGTAGACAAGCT
CAAAAACGTCAAACCAAAAACTTACTGGAACCAAATGCAAGCTTTAAAAA
GCTCTTCTCAAAAACTGTATACGATTAATGGCAAAACCAACAAAGATGAT
ATTACCACTGAATTCAAAGAACACTTCGATAATCTACTTAACACGCCCCG
GGTAACAGGTTTCAACAACTCTATCTCAAACAAAACGCTTCTTGAAAATC
TGACTGCTCTTGATACAAAGGAACCAGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007772-exon-sc0000079-1491911889:610234..612731 | TCONS_00007772-exon-sc0000079-1491911889:610234..612731 | Clytia hemisphaerica | exon |
| TCONS_00007772-exon-sc0000079-1510915933:610234..612731 | TCONS_00007772-exon-sc0000079-1510915933:610234..612731 | Clytia hemisphaerica | exon |
| TCONS_00007772-exon-sc0000079-1575043694:610234..612731 | TCONS_00007772-exon-sc0000079-1575043694:610234..612731 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:610234..612731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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