TCONS_00007771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007771
Unique NameTCONS_00007771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007771 ID=TCONS_00007771|Name=TCONS_00007771|organism=Clytia hemisphaerica|type=transcript|length=350bp
NNCCACAACAGACTCACCAAATACCTCCACAACAGACTCATCTGATACCC
CCACAAGGACTACCGCTCAGACCACCATTCCAAATCCCTCAACACTACCA
TTCAATCCAATGCAAACACTCCAGTAGTGAATAGCTTTGCATTTTTTAAC
ATACAAGGGCTTTGTCCACAAACAGTACCCAGCAAAGTTCCCTTTATTAA
AGATAATGTTTGTAATGAAAACCAACTTTTTGTTGGATTGTCAAATACTT
GGTTATATAACCATAAAGACGCAGAACTTAAAGTAGAAGGTTTCACTCCC
TTCCGATGTGATTcaacaagaaagaagaaatctAGAGGCAGATTTACTGN
Run BLAST on NCBI

transcript from alignment at sc0000079:508429..508778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007771 ID=TCONS_00007771|Name=TCONS_00007771|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at sc0000079:508429..508778 (Clytia hemisphaerica)
NCAGTAAATCTGCCTCTagatttcttctttcttgttgAATCACATCGGAA
GGGAGTGAAACCTTCTACTTTAAGTTCTGCGTCTTTATGGTTATATAACC
AAGTATTTGACAATCCAACAAAAAGTTGGTTTTCATTACAAACATTATCT
TTAATAAAGGGAACTTTGCTGGGTACTGTTTGTGGACAAAGCCCTTGTAT
GTTAAAAAATGCAAAGCTATTCACTACTGGAGTGTTTGCATTGGATTGAA
TGGTAGTGTTGAGGGATTTGGAATGGTGGTCTGAGCGGTAGTCCTTGTGG
GGGTATCAGATGAGTCTGTTGTGGAGGTATTTGGTGAGTCTGTTGTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004418XLOC_004418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007771-exon-sc0000079-1491911889:508429..508778TCONS_00007771-exon-sc0000079-1491911889:508429..508778Clytia hemisphaericaexon
TCONS_00007771-exon-sc0000079-1510915933:508429..508778TCONS_00007771-exon-sc0000079-1510915933:508429..508778Clytia hemisphaericaexon
TCONS_00007771-exon-sc0000079-1575043694:508429..508778TCONS_00007771-exon-sc0000079-1575043694:508429..508778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:508429..508778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.32737	3.37494	3.87101	1.89036	12.0292	8.41888	8.58078	8.54527	4.21686	3.71193	3.64851	5.87479	1.50315	3.87522	1.02727	2.47736	0.805589	2.08264	0	1.82911	3.48899	1.72845	0.32816	1.91436	3.88307	4.47266	1.52219	0.863612	0.605902	2.32983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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