TCONS_00007770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007770
Unique NameTCONS_00007770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007770 ID=TCONS_00007770|Name=TCONS_00007770|organism=Clytia hemisphaerica|type=transcript|length=317bp
GTTTctcaaaaaatgcaaagatGAGTTATCCGTTCCACTGTGTTTACTCT
GGAAGAAAAGCCTAGAAATAGGTCTTGTTCCAACTGAACTGAAAAAATGT
ACCATAACACCAATTCACAAAGGAGGAAGCAGATCTCTGGCTGCCAACTA
CAGACCAGTTGCACTCACCTCGCATGTGAtaaaaattttcgagaaaatat
tgagaaatcaTATTGTAAGTCACATGAACAACAATGAccttttcaatcca
aaccaacaTGGTTTCAGAAGTGGGAGATCCTGCCTTAGTCAGCTTCTCGA
GCAACACGACCTCATTC
Run BLAST on NCBI

protein sequence of TCONS_00007770-protein

>TCONS_00007770-protein ID=TCONS_00007770-protein|Name=TCONS_00007770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
FLKKCKDELSVPLCLLWKKSLEIGLVPTELKKCTITPIHKGGSRSLAANY
RPVALTSHVIKIFEKILRNHIVSHMNNNDLFNPNQHGFRSGRSCLSQLLE
QHDLI
Run BLAST on NCBI

transcript from alignment at sc0000079:505496..505812

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007770 ID=TCONS_00007770|Name=TCONS_00007770|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000079:505496..505812 (Clytia hemisphaerica)
GAATGAGGTCGTGTTGCTCGAGAAGCTGACTAAGGCAGGATCTCCCACTT
CTGAAACCAtgttggtttggattgaaaaggTCATTGTTGTTCATGTGACT
TACAATAtgatttctcaatattttctcgaaaatttttaTCACATGCGAGG
TGAGTGCAACTGGTCTGTAGTTGGCAGCCAGAGATCTGCTTCCTCCTTTG
TGAATTGGTGTTATGGTACATTTTTTCAGTTCAGTTGGAACAAGACCTAT
TTCTAGGCTTTTCTTCCAGAGTAAACACAGTGGAACGGATAACTCatctt
tgcattttttgagAAAC

Coding sequence (CDS) from alignment at sc0000079:505496..505812

>TCONS_00007770 ID=TCONS_00007770|Name=TCONS_00007770|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000079:505496..505812 (Clytia hemisphaerica)
AATGAGGTCGTGTTGCTCGAGAAGCTGACTAAGGCAGGATCTCCCACTTC
TGAAACCAtgttggtttggattgaaaaggTCATTGTTGTTCATGTGACTT
ACAATAtgatttctcaatattttctcgaaaatttttaTCACATGCGAGGT
GAGTGCAACTGGTCTGTAGTTGGCAGCCAGAGATCTGCTTCCTCCTTTGT
GAATTGGTGTTATGGTACATTTTTTCAGTTCAGTTGGAACAAGACCTATT
TCTAGGCTTTTCTTCCAGAGTAAACACAGTGGAACGGATAACTCatcttt
gcattttttgagAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004417XLOC_004417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007770-proteinTCONS_00007770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007770-exon-sc0000079-1491911889:505496..505812TCONS_00007770-exon-sc0000079-1491911889:505496..505812Clytia hemisphaericaexon
TCONS_00007770-exon-sc0000079-1510915933:505496..505812TCONS_00007770-exon-sc0000079-1510915933:505496..505812Clytia hemisphaericaexon
TCONS_00007770-exon-sc0000079-1575043694:505496..505812TCONS_00007770-exon-sc0000079-1575043694:505496..505812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:505496..505812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30085	2.40566	5.13579	4.92315	7.09899	7.86123	6.47987	11.4361	1.61282	0	1.50495	1.09901	1.24883	2.18921	0.518112	0.431173	0.477525	0	1.05488	2.75118	1.39243	1.97492	0	0	3.76504	3.16487	3.96046	2.74282	1.3488	3.08678
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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