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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007769 ID=TCONS_00007769|Name=TCONS_00007769|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CATCTAAGCAAATAGAGAGTAcgagattttaagattaaaaaaaatactat
aTTTTTAGTTAGGACACTCTTGAAACGTACAACACAGTACCAACTGTGAC
AAAAGTTCATATTTGCGTGATTTGTAATTTAAGGATATCTCAAAATAAGA
AGTAAAAGGAAACAGAAATCAGATTAACAATAATCGAAGATTTTCGATTT
TACAATAACAATAACATCAGAAGAAGGCTTTATTTGGGTTTTATTATATC
GAAACTTCATTTTGAACTCTTGTTATTCGATGCTTGGTTATGCCTCTTAA
ATATCCAAACTTTTACAGTCACCATCGACATAGCTTGAGTACAAAACCAT
TACTATCAGCATCTTCACGAAACAGTATCTCATCCGATACAGTACCACCA
AATTCACCAGCGTTCTATAACAACAGTAACCCAATTCGGAATACAAATTG
TCCCGATTTGTTATTCAAGAAAGATTCGACAGAGAAACAGTTATCAAATA
TGTCAACAGAAACCAtccaaaaaagttttcaaatggGTATTCAACATACT
TCTGAATTCGAATCAAGACGCAACTCTCTTTCATTTGACAATAACAAAAT
TCTCGAGCACATGCGCTTTTCAATGGATGTTCGAATGGATTTTCAAGATT
CGAATCGTTCAAAACGACGTGGTGTTGTCATTTCCTTAGGTATTGACCAA
CTGCGCTCTACTATTATCACACCGGCAGCGCTCACATGTGATTGGGATAT
AAGATCATACGGTCTGTTTCAAAGAAGAGGGATGAACAATAAAGAACGGT
CAAATACTTTCTGTTAGAATTGACCACGGAAAATTCATAGAAGGTTTGGA
TTTTCAATTGCGGTGAGAGGGTGAGAAACGACTCCAAGGCAACGTATCCA
GATGATATATAAACAGACAGtgttttgatgtatttttgCTTGAACAGTGA
ACGCTTTGTGGCGATACAAATTGTAAAGATTAATGTTAGTGCCCAATACT
GTCATGAATAAATGTGACTTTATCGATAGCTTTTAAACACCGAAAAGAAC
TAAAAATTGTCATATAAAGCTCAATGACAAATATTTCCATTACTTCTGAT
ATTCAAAGTCCTTTATTTTATCTTAACCAAATGAAGGATGCTTCGAatca
atgagacaggggtgtagtaTTCTAG Run BLAST on NCBI protein sequence of TCONS_00007769-protein >TCONS_00007769-protein ID=TCONS_00007769-protein|Name=TCONS_00007769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MPLKYPNFYSHHRHSLSTKPLLSASSRNSISSDTVPPNSPAFYNNSNPIR
NTNCPDLLFKKDSTEKQLSNMSTETIQKSFQMGIQHTSEFESRRNSLSFD
NNKILEHMRFSMDVRMDFQDSNRSKRRGVVISLGIDQLRSTIITPAALTC
DWDIRSYGLFQRRGMNNKERSNTFC Run BLAST on NCBI transcript from alignment at sc0000079:444142..445316 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007769 ID=TCONS_00007769|Name=TCONS_00007769|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at sc0000079:444142..445316 (Clytia hemisphaerica)
CTAGAAtactacacccctgtctcattgatTCGAAGCATCCTTCATTTGGT
TAAGATAAAATAAAGGACTTTGAATATCAGAAGTAATGGAAATATTTGTC
ATTGAGCTTTATATGACAATTTTTAGTTCTTTTCGGTGTTTAAAAGCTAT
CGATAAAGTCACATTTATTCATGACAGTATTGGGCACTAACATTAATCTT
TACAATTTGTATCGCCACAAAGCGTTCACTGTTCAAGcaaaaatacatca
aaacaCTGTCTGTTTATATATCATCTGGATACGTTGCCTTGGAGTCGTTT
CTCACCCTCTCACCGCAATTGAAAATCCAAACCTTCTATGAATTTTCCGT
GGTCAATTCTAACAGAAAGTATTTGACCGTTCTTTATTGTTCATCCCTCT
TCTTTGAAACAGACCGTATGATCTTATATCCCAATCACATGTGAGCGCTG
CCGGTGTGATAATAGTAGAGCGCAGTTGGTCAATACCTAAGGAAATGACA
ACACCACGTCGTTTTGAACGATTCGAATCTTGAAAATCCATTCGAACATC
CATTGAAAAGCGCATGTGCTCGAGAATTTTGTTATTGTCAAATGAAAGAG
AGTTGCGTCTTGATTCGAATTCAGAAGTATGTTGAATACccatttgaaaa
cttttttggaTGGTTTCTGTTGACATATTTGATAACTGTTTCTCTGTCGA
ATCTTTCTTGAATAACAAATCGGGACAATTTGTATTCCGAATTGGGTTAC
TGTTGTTATAGAACGCTGGTGAATTTGGTGGTACTGTATCGGATGAGATA
CTGTTTCGTGAAGATGCTGATAGTAATGGTTTTGTACTCAAGCTATGTCG
ATGGTGACTGTAAAAGTTTGGATATTTAAGAGGCATAACCAAGCATCGAA
TAACAAGAGTTCAAAATGAAGTTTCGATATAATAAAACCCAAATAAAGCC
TTCTTCTGATGTTATTGTTATTGTAAAATCGAAAATCTTCGATTATTGTT
AATCTGATTTCTGTTTCCTTTTACTTCTTATTTTGAGATATCCTTAAATT
ACAAATCACGCAAATATGAACTTTTGTCACAGTTGGTACTGTGTTGTACG
TTTCAAGAGTGTCCTAACTAAAAAtatagtattttttttaatcttaaaat
ctcgTACTCTCTATTTGCTTAGATG Coding sequence (CDS) from alignment at sc0000079:444142..445316 >TCONS_00007769 ID=TCONS_00007769|Name=TCONS_00007769|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000079:444142..445316 (Clytia hemisphaerica)
CTAACAGAAAGTATTTGACCGTTCTTTATTGTTCATCCCTCTTCTTTGAA
ACAGACCGTATGATCTTATATCCCAATCACATGTGAGCGCTGCCGGTGTG
ATAATAGTAGAGCGCAGTTGGTCAATACCTAAGGAAATGACAACACCACG
TCGTTTTGAACGATTCGAATCTTGAAAATCCATTCGAACATCCATTGAAA
AGCGCATGTGCTCGAGAATTTTGTTATTGTCAAATGAAAGAGAGTTGCGT
CTTGATTCGAATTCAGAAGTATGTTGAATACccatttgaaaacttttttg
gaTGGTTTCTGTTGACATATTTGATAACTGTTTCTCTGTCGAATCTTTCT
TGAATAACAAATCGGGACAATTTGTATTCCGAATTGGGTTACTGTTGTTA
TAGAACGCTGGTGAATTTGGTGGTACTGTATCGGATGAGATACTGTTTCG
TGAAGATGCTGATAGTAATGGTTTTGTACTCAAGCTATGTCGATGGTGAC
TGTAAAAGTTTGGATATTTAAGAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007769-exon-sc0000079-1491911889:444142..445316 | TCONS_00007769-exon-sc0000079-1491911889:444142..445316 | Clytia hemisphaerica | exon |
| TCONS_00007769-exon-sc0000079-1510915933:444142..445316 | TCONS_00007769-exon-sc0000079-1510915933:444142..445316 | Clytia hemisphaerica | exon |
| TCONS_00007769-exon-sc0000079-1575043694:444142..445316 | TCONS_00007769-exon-sc0000079-1575043694:444142..445316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:444142..445316 . |
Blast
The following BLAST results are available for this feature:
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