TCONS_00007767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007767
Unique NameTCONS_00007767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007767 ID=TCONS_00007767|Name=TCONS_00007767|organism=Clytia hemisphaerica|type=transcript|length=748bp
TGTGTGTTTCTATAGTGAAATATCTGAgcaatatattatattttattatc
cTTCTTTTTGTAGTATTTTCGCAATCTCTGATGAAGATTATTGAATACAT
TTGCGCACCGTTCCTTCAAAACATGGAAGTTGAGAAGAAAATGGTTGACG
ACacaaacaaaatattgaaaaaacgaATTGCTGTTCTTAAAGCCAATAAC
AACGTTTCTGCTCCACCTGCATCATCGATAACAGCCAATGAATGAATGAC
GGTGATTAAAGTCACGTGATCTTTGAGATCGAATTTAAAGTGCGCTCATG
AATAATTTTCACCAATGGATGGATGAGGAATTCTTTGGAGTCGGTGTTGG
TTCTGTCGAAAGTCTATCCATTTTCACGACATCGTGTTTTTAACCTAGCC
GTCTTTCATTAACTTTTTGATTTGgaacaagaaaatgaaaattggtGTTT
TTCATAATGAATGTATACACTGGACAAGCTTAGGTTCTACAGTAATCAAC
AAATATTGATACATTGTTTGGTGAACTATGTGTTGCCAGTTTGCGCCATT
CCCAGACTGGGGTCTCCATCCTACCGATGGTGTTCGCCTTTTGAATGGCT
TTCCTTAATTTTGTATGTTTTGTTTATAGAATATGCTCCTTAGATATATA
GTGGCTGGTCGTTTTATAAGTGATATCAGATTCGGTTTCTTTATAAATTA
TGTTACTTTTTCATAGTATCTTTGCATCCGGGAAAAGGTGCCTATTAC
Run BLAST on NCBI

transcript from alignment at sc0000079:406609..407356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007767 ID=TCONS_00007767|Name=TCONS_00007767|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at sc0000079:406609..407356 (Clytia hemisphaerica)
GTAATAGGCACCTTTTCCCGGATGCAAAGATACTATGAAAAAGTAACATA
ATTTATAAAGAAACCGAATCTGATATCACTTATAAAACGACCAGCCACTA
TATATCTAAGGAGCATATTCTATAAACAAAACATACAAAATTAAGGAAAG
CCATTCAAAAGGCGAACACCATCGGTAGGATGGAGACCCCAGTCTGGGAA
TGGCGCAAACTGGCAACACATAGTTCACCAAACAATGTATCAATATTTGT
TGATTACTGTAGAACCTAAGCTTGTCCAGTGTATACATTCATTATGAAAA
ACaccaattttcattttcttgttcCAAATCAAAAAGTTAATGAAAGACGG
CTAGGTTAAAAACACGATGTCGTGAAAATGGATAGACTTTCGACAGAACC
AACACCGACTCCAAAGAATTCCTCATCCATCCATTGGTGAAAATTATTCA
TGAGCGCACTTTAAATTCGATCTCAAAGATCACGTGACTTTAATCACCGT
CATTCATTCATTGGCTGTTATCGATGATGCAGGTGGAGCAGAAACGTTGT
TATTGGCTTTAAGAACAGCAATtcgttttttcaatattttgtttgtGTCG
TCAACCATTTTCTTCTCAACTTCCATGTTTTGAAGGAACGGTGCGCAAAT
GTATTCAATAATCTTCATCAGAGATTGCGAAAATACTACAAAAAGAAgga
taataaaatataatatattgcTCAGATATTTCACTATAGAAACACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004414XLOC_004414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007767-exon-sc0000079-1491911889:406609..407356TCONS_00007767-exon-sc0000079-1491911889:406609..407356Clytia hemisphaericaexon
TCONS_00007767-exon-sc0000079-1510915933:406609..407356TCONS_00007767-exon-sc0000079-1510915933:406609..407356Clytia hemisphaericaexon
TCONS_00007767-exon-sc0000079-1575043694:406609..407356TCONS_00007767-exon-sc0000079-1575043694:406609..407356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:406609..407356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.3256	44.096	40.2442	36.4562	4.43819	3.36683	9.13937	9.50685	11.8698	8.17579	8.26905	8.19746	8.18607	8.77408	7.92362	10.0675	13.3412	12.9146	3.84833	3.73413	10.1824	8.28803	28.7539	25.5926	13.6392	16.5876	6.04703	6.74252	13.0771	19.5015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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