TCONS_00007766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007766
Unique NameTCONS_00007766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007766 ID=TCONS_00007766|Name=TCONS_00007766|organism=Clytia hemisphaerica|type=transcript|length=609bp
ctTTCAAGACAAGATCAAAGTTAAAGAAAGTTTAAATAATTGGTTGATAA
ATGGATAACACAAGTAAAATGGGTTTACAAAGGGGCttaggatatattgg
atatatAGTCCAGAGGTAGTGAAAATTCTACAAACTTTGCCTTGCTTGGG
TGGGGTAAAACTGCTTTGATTAGGGGTGAATAGGAATGTCCGGGGTCAAC
TGATATTTGTCCGCGAGTTTAGATCTGTcggggggggggtcaaaagtcac
atgtctgggggtaaatttttttttaagttttatccACCCCCATCATGTTC
CTTATGCCCTTCCTAACTTCTTTGTGCCCAAGCTTCCCGAATGAAAGAGG
AACCATGAGCTTTACAACGTGCTTTTAAGTCTTTTGGAGATACATACTAT
TCTTGATTACTGtctattgaaaaagaaatctcaGCATAGTTTTCTGGTTT
TCGACCAAGGTAACATAGTacgttttcttttatcattgtgaGTTTTATAT
TAGGAAGATTATTTAGCTAgagtttatatatttttgtatatatttcgTCC
AGGTCTATTTTACCAGTACCTTTTTAACCTCATAGCGTTCACAagatttt
ttattatat
Run BLAST on NCBI

transcript from alignment at sc0000079:400539..401147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007766 ID=TCONS_00007766|Name=TCONS_00007766|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000079:400539..401147 (Clytia hemisphaerica)
atataataaaaaatctTGTGAACGCTATGAGGTTAAAAAGGTACTGGTAA
AATAGACCTGGAcgaaatatatacaaaaatatataaactcTAGCTAAATA
ATCTTCCTAATATAAAACtcacaatgataaaagaaaacgtACTATGTTAC
CTTGGTCGAAAACCAGAAAACTATGCtgagatttctttttcaatagaCAG
TAATCAAGAATAGTATGTATCTCCAAAAGACTTAAAAGCACGTTGTAAAG
CTCATGGTTCCTCTTTCATTCGGGAAGCTTGGGCACAAAGAAGTTAGGAA
GGGCATAAGGAACATGATGGGGGTggataaaacttaaaaaaaaatttacc
cccagacatgtgacttttgaccccccccccgACAGATCTAAACTCGCGGA
CAAATATCAGTTGACCCCGGACATTCCTATTCACCCCTAATCAAAGCAGT
TTTACCCCACCCAAGCAAGGCAAAGTTTGTAGAATTTTCACTACCTCTGG
ACTatatatccaatatatcctaaGCCCCTTTGTAAACCCATTTTACTTGT
GTTATCCATTTATCAACCAATTATTTAAACTTTCTTTAACTTTGATCTTG
TCTTGAAag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004413XLOC_004413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007766-exon-sc0000079-1491911889:400539..401147TCONS_00007766-exon-sc0000079-1491911889:400539..401147Clytia hemisphaericaexon
TCONS_00007766-exon-sc0000079-1510915933:400539..401147TCONS_00007766-exon-sc0000079-1510915933:400539..401147Clytia hemisphaericaexon
TCONS_00007766-exon-sc0000079-1575043694:400539..401147TCONS_00007766-exon-sc0000079-1575043694:400539..401147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:400539..401147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0886944	0.086491	0	0.0982495	0.119609	0	0.114031	0	0.074741	0.370315	0.269578	0.11814	0.0589878	0.0612594	0.302182	0.0540478	0.399495	0.204735	0	0.295984	0.171509	0.250969	0.20339	0.64719	0.190454	0.084988	0.121618	0.129794	0.787551	0.702091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top