TCONS_00007760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007760
Unique NameTCONS_00007760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007760 ID=TCONS_00007760|Name=TCONS_00007760|organism=Clytia hemisphaerica|type=transcript|length=745bp
GGAAAGTGGTAAGTTTGCTAAAGTGGTCTACGACAAAATCATTATCAGAA
ACTTTAGACCATCTCGCTAGTTTTAGTTAATTTCTCTAATTATTTTTATT
CTTcgtaattttttccaaaaatcacaATGGGTGAAtcctcattttctttt
ttgaataaaaatcaaCTACCAACTCTTAGTGATTCGAATGATCCAGACGC
TaacttttatgaaaaaatttcttttgaaactcCATTTTTGACCCTAAACT
TAGTAAGAGAGAAATAGCCTGTCTCAACAAATTATATCGTGTTCACTTAT
CTtcagttcctttgtttttgctTTCAAATAGTCTACTCACAGTACGTGCG
TTTTTTTCTGAAGGATTAGTGAATATATAAGGTTATTTTCGGTtcaacga
ttaaaaaataataatagaaTCTGTAAATTCAAGGTGTTCTCGCAGGTACA
TTTTAATTTGTAATTAAAGGACTCTACTTTACCCCTGACGCGAGAGGCAA
AGATACGGAAATTATTCGTCACGCTGTTAGGTCATATTCTTCAACAGCAA
GACGAGACGAAAAGCTCCCGAAAGTTCTATGGTAAAAGAAGGCGAATATA
TTGTAAAATTCTTTATCGATGTAGGGTAATTCCATGTcatccaaaattta
aaaaatctagacACCATTAGCCCTcagattttcttcaattttttaaccAT
ATGAAGATGTTCATGAGAAAAGGcaatcctgaaaatttcacctac
Run BLAST on NCBI

transcript from alignment at sc0000079:284864..285608

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007760 ID=TCONS_00007760|Name=TCONS_00007760|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0000079:284864..285608 (Clytia hemisphaerica)
gtaggtgaaattttcaggattgCCTTTTCTCATGAACATCTTCATATggt
taaaaaattgaagaaaatctgAGGGCTAATGGTgtctagattttttaaat
tttggatgACATGGAATTACCCTACATCGATAAAGAATTTTACAATATAT
TCGCCTTCTTTTACCATAGAACTTTCGGGAGCTTTTCGTCTCGTCTTGCT
GTTGAAGAATATGACCTAACAGCGTGACGAATAATTTCCGTATCTTTGCC
TCTCGCGTCAGGGGTAAAGTAGAGTCCTTTAATTACAAATTAAAATGTAC
CTGCGAGAACACCTTGAATTTACAGAttctattattattttttaatcgtt
gaACCGAAAATAACCTTATATATTCACTAATCCTTCAGAAAAAAACGCAC
GTACTGTGAGTAGACTATTTGAAagcaaaaacaaaggaactgaAGATAAG
TGAACACGATATAATTTGTTGAGACAGGCTATTTCTCTCTTACTAAGTTT
AGGGTCAAAAATGgagtttcaaaagaaattttttcataaaagttAGCGTC
TGGATCATTCGAATCACTAAGAGTTGGTAGttgatttttattcaaaaaag
aaaatgaggaTTCACCCATtgtgatttttggaaaaaattacgAAGAATAA
AAATAATTAGAGAAATTAACTAAAACTAGCGAGATGGTCTAAAGTTTCTG
ATAATGATTTTGTCGTAGACCACTTTAGCAAACTTACCACTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004407XLOC_004407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007760-exon-sc0000079-1491911889:284864..285608TCONS_00007760-exon-sc0000079-1491911889:284864..285608Clytia hemisphaericaexon
TCONS_00007760-exon-sc0000079-1510915933:284864..285608TCONS_00007760-exon-sc0000079-1510915933:284864..285608Clytia hemisphaericaexon
TCONS_00007760-exon-sc0000079-1575043694:284864..285608TCONS_00007760-exon-sc0000079-1575043694:284864..285608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:284864..285608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.463329	0.129091	0.374718	0.0733205	1.42817	0.493745	0.425487	0.637338	0.167331	0.138177	0.0670592	0	0.132062	0.045716	0.0375848	0.0403342	0.198754	0.0509291	0.211084	0.147256	0.255984	0.18729	0.303568	0.413981	0.639586	1.39533	0.0907594	0.0968609	0.220397	0.0748498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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