TCONS_00007759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007759
Unique NameTCONS_00007759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007759 ID=TCONS_00007759|Name=TCONS_00007759|organism=Clytia hemisphaerica|type=transcript|length=725bp
TTTGCTACCGACTTTTGCCTTTTCGCTTACTTTCCCCTTCTCCCCTTTCT
TTCCCCCCTTTCCCCCTCGCTTCGGGACGGTCTTGCCCCTTTTTAAGCTC
TGTACCGCTTTTTGCTGGTCTGTAATGTCCCAGTCTTATTTCGAACAGAA
TTAAATATAAGTTTCCATTCTAATCGATAAAAATTCAAGATATGCATAAT
CGATTAAAGAATAATGAGGGCGTAAAAGATAAGCGAAaaggattaaataa
tcgaatataggagattaaataatcgaagCTATTCGACCAAGACGGCAGCT
ATTcgattaaatagtcgaatcaTTAATGAACTTCATAAACGAAAAtcgat
tttaattttgaaaagatcCCTAAGTACTTGTAAATTGCACAGCATGTAAA
TTGATGTGCTACGCGTAAGACAAATTTGATAGTTTTACCCATttgtacat
tttaaaaatatccTATATTTGATTGTGACTGATTTAAAAGAGAACTGGGA
TTGATATTAGTTGTTTTGATCAAATTGCAgttctaaattttcatttcaca
TTGTAAACTtccactggtcaaaatttcaaagaaatctgAGACAAGGGTTA
CATGCCCTGGATGATTTGAGATGGAATGAACCTCATTTGGGTCGCAACAA
AAAAAGATGGCTGAAAGGAAGATGGCTGCCGCAATTCGCAATATTGATAA
TGTAAGTAACAAGATTTGTTTGTGT
Run BLAST on NCBI

transcript from alignment at sc0000079:267258..267982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007759 ID=TCONS_00007759|Name=TCONS_00007759|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0000079:267258..267982 (Clytia hemisphaerica)
ACACAAACAAATCTTGTTACTTACATTATCAATATTGCGAATTGCGGCAG
CCATCTTCCTTTCAGCCATCTTTTTTTGTTGCGACCCAAATGAGGTTCAT
TCCATCTCAAATCATCCAGGGCATGTAACCCTTGTCTcagatttctttga
aattttgaccagtggaAGTTTACAAtgtgaaatgaaaatttagaacTGCA
ATTTGATCAAAACAACTAATATCAATCCCAGTTCTCTTTTAAATCAGTCA
CAATCAAATATAggatatttttaaaatgtacaaATGGGTAAAACTATCAA
ATTTGTCTTACGCGTAGCACATCAATTTACATGCTGTGCAATTTACAAGT
ACTTAGGgatcttttcaaaattaaaatcgaTTTTCGTTTATGAAGTTCAT
TAAtgattcgactatttaatcgAATAGCTGCCGTCTTGGTCGAATAGctt
cgattatttaatctcctatattcgattatttaatccttTTCGCTTATCTT
TTACGCCCTCATTATTCTTTAATCGATTATGCATATCTTGAATTTTTATC
GATTAGAATGGAAACTTATATTTAATTCTGTTCGAAATAAGACTGGGACA
TTACAGACCAGCAAAAAGCGGTACAGAGCTTAAAAAGGGGCAAGACCGTC
CCGAAGCGAGGGGGAAAGGGGGGAAAGAAAGGGGAGAAGGGGAAAGTAAG
CGAAAAGGCAAAAGTCGGTAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004406XLOC_004406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007759-exon-sc0000079-1491911889:267258..267982TCONS_00007759-exon-sc0000079-1491911889:267258..267982Clytia hemisphaericaexon
TCONS_00007759-exon-sc0000079-1510915933:267258..267982TCONS_00007759-exon-sc0000079-1510915933:267258..267982Clytia hemisphaericaexon
TCONS_00007759-exon-sc0000079-1575043694:267258..267982TCONS_00007759-exon-sc0000079-1575043694:267258..267982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:267258..267982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550043	0.335236	0.389241	0.533137	1.85441	1.31884	1.14915	1.90337	0.869082	1.00473	0.8359	0.732651	0.640178	0.664831	0.195208	0.377078	0.206457	0.264515	0	0.152964	0.265906	0.19455	0.0788335	0.215013	0.590556	1.12	0.471386	0	0.228939	0.155502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top