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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007738 ID=TCONS_00007738|Name=TCONS_00007738|organism=Clytia hemisphaerica|type=transcript|length=2790bpRun BLAST on NCBI transcript from alignment at sc0000079:448124..487990- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007738 ID=TCONS_00007738|Name=TCONS_00007738|organism=Clytia hemisphaerica|type=transcript|length=39867bp|location=Sequence derived from alignment at sc0000079:448124..487990- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007738 vs. Swiss-Prot (Human)
Match: LRC71 (Leucine-rich repeat-containing protein 71 OS=Homo sapiens GN=LRRC71 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 5.855e-34 Identity = 87/205 (42.44%), Postives = 133/205 (64.88%), Query Frame = 2
Query: 473 KNKYDYFKPRVEIETEEEANRIFVKELYIRGWRVEQKVIDVLAITMPELERLTLVDFWNAGLTDETVVTLGHCLSAAPS-LKTLRLDGNSHASSQRFDIFLSEKSMVQNLSLKNCCITDLGAQHIGNSLKD----NRNLATLNLCFNKITDEGVSHLAKXXXXXXXXXXXXXXXXXXXDDGAKHISEVLSTFQLTHEEIVQRRQL 1072
++KY +F+P +++E E+E ++ VKE+YIRGW+VE++++ V + +P L +L ++ W GLTD+T+ T L S L+ + L+GN Q + ++ S + +LSL+N I D GAQ +G +L NR L +LNL FN I DEG ++A GLR+NRSLL L+L N+I D GA ++EVL F+LTH E+V+RR+L
Sbjct: 118 ESKYVFFRPTIQVELEQEDSK-SVKEIYIRGWKVEERILGVFSKCLPPLTQLQAINLWKVGLTDKTLTTFIELLPLCSSTLRKVSLEGNP-LPEQSYHKLMALDSTIAHLSLRNNNIDDRGAQLLGQALSTLHSCNRTLVSLNLGFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRAFELTHTEVVERRRL 320 HSP 2 Score: 26.9498 bits (58), Expect = 5.855e-34 Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 2
Query: 230 EKYKPTGDFEKDFVELCTLVG 292
E+Y+ +G E DF ELCT G
Sbjct: 54 EEYQCSGVLETDFAELCTRWG 74 HSP 3 Score: 22.7126 bits (47), Expect = 5.855e-34 Identity = 15/43 (34.88%), Postives = 17/43 (39.53%), Query Frame = 3
Query: 270 WSYAHW-LVFNRSVWWHALNARVHPQLLPRASLQEKGVRTHHR 395
W Y + V NR R HP +P ASL EK R
Sbjct: 73 WGYTDFPKVVNR--------PRPHPPFVPSASLSEKATLDDPR 107 HSP 4 Score: 85.5001 bits (210), Expect = 4.542e-17 Identity = 45/101 (44.55%), Postives = 58/101 (57.43%), Query Frame = 2
Query: 1349 VEEVVEFKNPLLENVREEDGALWIPGNKALINLNLARNSISEVGLEHLYEAVKYQSDMSIESNKTSLGTGLMRLSLQRNKFLSMNPTYLKLVDLMKTRDPF 1651
V E E NPLLE V DG +++PGNK L++LNL RN I+EVGLE V+YQ S + + GL+ LSL +N F P Y + +LM RDP
Sbjct: 445 VVEATEVVNPLLEPVEHRDGKVFMPGNKVLLHLNLIRNRITEVGLEGFLATVQYQMQFSKAKSASKGPVGLLWLSLAKNCFAPQCPAYAIIQELMLPRDPI 545 The following BLAST results are available for this feature:
BLAST of TCONS_00007738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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