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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007731 ID=TCONS_00007731|Name=TCONS_00007731|organism=Clytia hemisphaerica|type=transcript|length=1566bp
caGGCGTGTGATCCCACTCATTAAATTACATATACAGACTGTGTTagatt
cttttttctctttgcctttcaatttttaagtttcgcttaaaaaattttgc
ttcgcaatttttatctcaaaaaacttttttcttcgcCAAAACCTGAAATT
GCTTCGCAATTTGCGAAGTGCgaagctataattcgaaccctgaaTTCCTA
TGGCTACTCAATCGACTTCTTCAGCAATCACCACATCACCATCTGGGAAA
AGATCTCGATTCCAATACACCTCCATTGGAACATCGCCGCCATCAAAGAA
GCGATCAGAAGATGGTAAAATTGTCAGCCCAatcaaagctttttttaata
aagatGGGAAGGTGATTGTGAAGAACATGCCGCAACGTCAACATGACCCA
TCGACACTCAAGCCAGACAATCTAAGCTCATCAACGAAACCACCGAGACA
AACAGTGCAAGCGGAACAGCATAGCAATGTTCCGAAATCACCCCAAAAGT
CTCCCCCGTTATTTGCCAGACAGCCTAATGATTACACCCGAAGAGTCCCA
AAACGTTGGTTAGAATCTTTGAACCAAACAGAGGCTCAATGTTTGGGACA
AGAGCTTTTTTCGAAAACTGAAGGTGAAGATAGGATGAAAAGACCTACGA
AACTTTGGCATCATCCGCCGGAAATCAATGATGATGCTGTCAAGAAACCC
AATTCAGCGGAGTATAATATGCGGCGACTGTTTTTGTGGATGCCAAGAAA
GATGTTGGCATTTGAGTTTGATTGTCCTAGATCAGAATGAAATGGTAAGG
GATTAACATCTAAAGGACTTTACAACAGGCTACGTCATGTACTTGATGTC
AATGATTTTTATTATTTGGCAACTGAAAAGCTATATTGTCGTCGCTGCGG
GAAGGACTTTCAAAGTTATGATTCTCGTCTTATTGAGCAACTACCTTTGC
ATAAGCAACTCCTGTTTCCAGCAGTTCTGACAGGTGTTTACGCATGCGAT
AAATCCTTGATATCTTTGATGAAATCTCGTACATTAGGCAATAGCTCTCA
TGCAATGAAAAATTCCATACATGAAATGCATAGCGAACATTGGGTCAAAC
AAAACATGATTTACCTAGATCACTGCAAGAAGTACAAGGATAAGGTATCA
TTTTTTAGAGGTGCCGAGGAGATTGAGTTTTTGTGTGTTGAAAGGGGATA
CTCTTTTCTCCAAATGATATGTGCCCCCAAGAGAAATCATTTGAAACCAG
ATCATCTAGAAACACTCCTTTTACAGTGAAAAAGTCTAAAGATTACTCAA
gcgaaatataatttttggaaaaatagaaaCTTTTAACTAGTCAAGGACAC
ATTACAATTATTACATTGCATTTACACAGTctcaaattttatgtttttat
gattttgaagaTTATAGATCCACTATGATTAAGGTttggtctttttttta
aatctttcacAAATAAAGTGTCATACTGATCTTGTAATTCTGTACTTCTG
GTCAAGCATTACATGCTTTTTTGATTTAGTATTTCTTCATCTTGTGTGTT
TATTTTAGGATCCTTA Run BLAST on NCBI transcript from alignment at sc0000079:286114..288027- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007731 ID=TCONS_00007731|Name=TCONS_00007731|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at sc0000079:286114..288027- (Clytia hemisphaerica)
CAGGCGTGTGATCCCACTCATTAAATTACATATACAGACTGTGTTAGATT
CTTTTTTCTCTTTGCCTTTCAATTTTTAAGTTTCGCTTAAAAAATTTTGC
TTCGCAATTTTTATCTCAAAAAACTTTTTTCTTCGCCAAAACCTGAAATT
GCTTCGCAATTTGCGAAGTGCGAAGCTATAATTCGAACCCTGAATTCCTA
TGGCTACTCAATCGACTTCTTCAGCAATCACCACATCACCATCTGGGAAA
AGATCTCGATTCCAATACACCTCCATTGGAACATCGCCGCCATCAAAGAA
GCGATCAGAAGATGGTAAAATTGTCAGCCCAATCAAAGCTTTTTTTAATA
AAGATGGGAAGGTGATTGTGAAGAACATGCCGCAACGTCAACATGACCCA
TCGACACTCAAGCCAGACAATCTAAGCTCATCAACGAAACCACCGAGACA
AACAGTGCAAGCGGAACAGCATAGCAATGTTCCGAAATCAGTAAGAGTTT
CTATTCACTTTTCTATTCACGTTTCTTTTCCAATCTTTTGATGGGGGATA
GAAATACTATTATTTTGGGGTTAACCTTTATGTACTTAGGGGGAAAAATC
ACTTCACTAAGTTTGCTTGAAATATACTTAATCCAATTATTTAAGCTCAT
GAAGCTGATAATAGCTTGGAACTGCTATGCAATTTATATATGAATTACTT
CTTTTTTCTAGGACAATTTTTTTTCATTTCATAAGTAAAATATCTTTTAT
GTATTTCCACCAATAAGCTCTGGGTACACATTAAATTTTTTTTGATTTTA
TTTGGTAAAAAATTCTTGATGATTATTTTGCATTTTAGCCCCAAAAGTCT
CCCCCGTTATTTGCCAGACAGCCTAATGATTACACCCGAAGAGTCCCAAA
ACGTTGGTTAGAATCTTTGAACCAAACAGAGGCTCAATGTTTGGGACAAG
AGCTTTTTTCGAAAACTGAAGGTGAAGATAGGATGAAAAGACCTACGAAA
CTTTGGCATCATCCGCCGGAAATCAATGATGATGCTGTCAAGAAACCCAA
TTCAGCGGAGTATAATATGCGGCGACTGTTTTTGTGGATGCCAAGAAAGA
TGTTGGCATTTGAGTTTGATTGTCCTAGATCAGAATGAAATGGTAAGGGA
TTAACATCTAAAGGACTTTACAACAGGCTACGTCATGTACTTGATGTCAA
TGATTTTTATTATTTGGCAACTGAAAAGCTATATTGTCGTCGCTGCGGGA
AGGACTTTCAAAGTTATGATTCTCGTCTTATTGAGCAACTACCTTTGCAT
AAGCAACTCCTGTTTCCAGCAGTTCTGACAGGTGTTTACGCATGCGATAA
ATCCTTGATATCTTTGATGAAATCTCGTACATTAGGCAATAGCTCTCATG
CAATGAAAAATTCCATACATGAAATGCATAGCGAACATTGGGTCAAACAA
AACATGATTTACCTAGATCACTGCAAGAAGTACAAGGATAAGGTATCATT
TTTTAGAGGTGCCGAGGAGATTGAGTTTTTGTGTGTTGAAAGGGGATACT
CTTTTCTCCAAATGATATGTGCCCCCAAGAGAAATCATTTGAAACCAGAT
CATCTAGAAACACTCCTTTTACAGTGAAAAAGTCTAAAGATTACTCAAGC
GAAATATAATTTTTGGAAAAATAGAAACTTTTAACTAGTCAAGGACACAT
TACAATTATTACATTGCATTTACACAGTCTCAAATTTTATGTTTTTATGA
TTTTGAAGATTATAGATCCACTATGATTAAGGTTTGGTCTTTTTTTTAAA
TCTTTCACAAATAAAGTGTCATACTGATCTTGTAATTCTGTACTTCTGGT
CAAGCATTACATGCTTTTTTGATTTAGTATTTCTTCATCTTGTGTGTTTA
TTTTAGGATCCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007731-exon-sc0000079-1575043694:287538..288027 | TCONS_00007731-exon-sc0000079-1575043694:287538..288027 | Clytia hemisphaerica | exon |
| TCONS_00007731-exon-sc0000079-1575043694:286114..287189 | TCONS_00007731-exon-sc0000079-1575043694:286114..287189 | Clytia hemisphaerica | exon |
| TCONS_00007731-exon-sc0000079-1510915933:287538..288027 | TCONS_00007731-exon-sc0000079-1510915933:287538..288027 | Clytia hemisphaerica | exon |
| TCONS_00007731-exon-sc0000079-1510915933:286114..287189 | TCONS_00007731-exon-sc0000079-1510915933:286114..287189 | Clytia hemisphaerica | exon |
| TCONS_00007731-exon-sc0000079-1491911889:287538..288027 | TCONS_00007731-exon-sc0000079-1491911889:287538..288027 | Clytia hemisphaerica | exon |
| TCONS_00007731-exon-sc0000079-1491911889:286114..287189 | TCONS_00007731-exon-sc0000079-1491911889:286114..287189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:286114..288027 - |
Blast
The following BLAST results are available for this feature:
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