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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007729 ID=TCONS_00007729|Name=TCONS_00007729|organism=Clytia hemisphaerica|type=transcript|length=4410bp tgataataatATTGCTCTGGGCAAAAAATCTGATAAAGTTCTTTCCTACT TTGCTCTCAATGCTACTTTGAAGTACTGGTGGCAATACATTCGTCTACAG AAACAATATAAAACTGAGGAGGCCCGGCCAGGGGGTAAACGAGCTGTTCT ACAAATCCTTACAGGATACAAGGACCATTGAGACGTATATAAATGTGTAC ACTGTAGAGACTACAGGTAAATGGAGTAGCAGGGTAGCCAAGTTAAAGGA CTGGTATGGAGCAAGTGAAGCTGCATATATTGAGAAAGTCCGCAGGGATG AATGGACACATTATTCCATGAGGCTTAGTGATTTGTTCGAAGGAGTCGTC ACCGCCCTTTCGGCCACAGATAAGGACCGATTGAGTATTTTGCTCACTTT GAAAAGGAGTTTACCAAAAAGCTACCATATGGCGGATTGGTGAGTAGGAT ATCGATCATTAATCTTTAATAAAATGAATTAAGATTTGAAAACGCATATT TGTCATACCCGTTCTTCTTTCAGGTATATTCGCAAACAAGAGGGTGTATA GAAATGGCGGATATCGCTAGCAAGCAGATGGGGTTTTTTATGGCAAATAA CGATGACGAGGTGTACGGACCAATGCTCAATAACATTCAGGACTTCATGG GCGGGTTTGACCTTTTCCAGTGtgataaagaaatattatcaTATTTGCAA GCTATTCAACAAGCAAACCCGCGACTCATTGCAACTCCTAAGTAAGTATT GGTTATATTAACGCGCCCGTATATTAACTTGGGATATAATCTGCTGTTAC ATACATAAGCCCTCATTCATTTTTAGAATGGATATGTCAAGCGAAACCTT ACAGAAGATATCGAAACCACCTAACATGTACATGCAGCATCTGCTCAGCC ATCTCAATATCGTGGACAAAGCGACATTTTGGAGGACAATGACCGCATTT AGAGGTATTGCAGTCCCATTCATATCAACCACGAAATTCAACGAAAAAGG AGCTCGTGAAACAATATACAGTCCGTACCATCAATACATTAACCGCGCCT TTATGAAAGTGGCTAACTATGTAACCCCCTTTTACGATCAATGTTCCTCC GATAATTCACTCGTTGATGCGATGACCACGGTGAAGGAGATTCAGGAGAA GACAGCTGTTGACACACAAGACTCATCGTATTATCTAATGCAAATGATAC TTGCATTCTGTGACAGTCAATTGTTCATTGAACCCGTTGTCAAACAAGGG AAGATTGGCAAAGCGTGCAGAGGATATACGTTTGGTGACTACGAAATCAG CGATGAATTAATGGCGGAGTATCATGCTATGCGTAGTGTCGTCAAATCGC CATCATATCATACAATACACGCTACAACACCCATAGGGGTAAACGGGTAA GTCTATTAGCTAATGGGTAAATGCAATATATGAATGTAGAAACTAAACTA TATATTTCAGGCAGCAGCACGACAAGAATAATAGTGACTGTCATTTTTTA TAGATCTGCCATAACGGACAAAGCATCAGCAAAGAAGTATCTCAGAGGTT TAATACAAACATTGAGGAAGCACCGACATGACATTACAATTATATTACAG AATGTTTCGACAATGACACAATTGGACGTGAGTATAACAGTATGTGTTAA CTATACGATTGTGTTAGTGTCTGACAGGGGAGTATTGATATTCGTGTCTA CTGTTGTTTAGAACTTTCTGAAGGCAAACGCACCACGCCCGCCAACGGTA AATCATTGCGAATGCTGTCCGAAGGGCAGGAAACATATAGACGGTATCAA CCACTACGACATAATGGAGTCGATTGTCAAACCGAAGCCGAAGAGACATG TTACCCTACTAAATGGTCCATCGCATACATGTAAAAGCTCGTATGTTGAA CGTACGTCAGAGGTGTTCGGCGGCTGCTATTCATTGACAGGCAATGTAAA AGCTGGGGAATTCGACTTTAGCCAAATGATTGCAAGTCCAGAAAGAATCA CCTTCCTGGACGAAATGGACTCCATTTACATGATGCAAAATACCGGTAAA TATCAAATATTTGGCATTACCCTCCATATGAAGGACACTGTATCTATATA ATATTATCGAATTTCCTTTCAGGTGCCATGAACCAATTCTTTGATGGCAT AACACAGAAAATACATTGTAACATCAAATATGGGAAGATAAAGGAAGTTT CCACGCCCAAATCAAAACATACGATTATCACAACGAACGACCTTAAGCGT TATCTGGCACCAACAACGAACGAAGATTCAGTGGAATTACAAATGTGCAA GAAGCCAGTGCACAGGTTCGCACAGCGAGTAACAGAATACAGACTACGTT TGTTAATCACACCCGATGCATCGGAAGCAACACGACGAAAGTATAACTAC GATGCAATTGGAGTAATAGCGCACTTTCTATATAATTGCCTGTCGGACGA TGGAACACCATCATCGATGAAAGCCAACGAAATCATGGAACATATCATAG ATCGTTGCAGTAATATATTTCCCGCAGAAGCGAAACAGGATAGTGACCTA CCACCGGTAAAAATAAGGAATATACATTGGGCGAGTGGACAAGAGAAGAA GTACAGTATGTGCTATAATGCGATGAACCTGTTGCCCCCGCCGTTGCCAT GAACAACATGAATCATAATTCCACTCTGTTGGACGATTTGAAGCAACATC ATACGAACGGTATCGTATTTCTCGCCAGCGAGAACTATAGAGGGACAGta gaacatttcaaatattctgCTCAAATCTATCAAGCTAGATGTGCGTTCAT GACTGCAGACGTACTGCGCCAAATGATAGACGAAGGAAATTAGAGGAATA TTCCATTGGCGAGAAGGGATATCGAACGACTACAGGCTTCGTTCCCTCTC AATCCAGCGCATATAGACGACGAGCAAAGAATGTACATGAGAAGGGCACA CATAGAGAAGCTCTTTGAGGAAAATGGTATAACAACCGACGACGCCCACG ACGCCACCGCCGAACGCGCTCCATCGCACCACGCCGACGATGGTCAACAA CCCGGTCCATCATCTCACAACAGAAAATGAGAAAACGCAATTTGTAAGca atctttatttttattctcTATTCTTTCCTTTTcagttaaaaatgaaatat atgtTGCCAGAACCATTACCTGACTTTGACGAATATGTACGGTTACACCT ACATGAAAATGATGATATAATCCATATGCTTTATAGAATTGCAAATAGCG AGGACGAACAAAAAGCAAACTGTAATCTCAAACGGATTGGCATTGCAATG AGACATATAGTATTCAAAATACATTATAAAAGGACAGGAATAACCGAGAG CTTAATACGGCAGTTGAACAATATTATCACAGGGAAACCCGTTTGGTATA GTCCTCCCTATATCATTTGCAAGTGCGGCTACCATAAAAAGAGAAACAAA TTATTCCGGTACTGATACCAAAGCTAAACAAACCAAGCCAGAATGTACCA AAAGTACACCAATATCACCAAGCAGTGTTAATTCAAAACTTTTGTCGTCA AGGACATTTTCACACGCTGGAATGTAAACAAAGATATCGGTGAGactttg atgatattttttcccattggcaattttcaaattgaatttattGTTGATTT CTTCTTTGTTATTATATATAGGATGGTACTGTGTATTTTTTTGTTATGAG TTCATAGTAAGATGTTCTCAATTCTAGTCATAAGGAACGTGTCAAACTGG AGTTCTGGTTGACAGGTAATTTGAAGGTTTCATCACTCAGAATATGTATT ATTATAGTGAGTAGTTATTTTACAGTAACGCTCTATTCTTATTTTAAACG TCCTCAGCCATCAACGCACAAGACAAGTATTCCACGCTCTATTCCAAGGA ATATTCAATCCCTGTCACCAAAAAACAATCCAAACGAGAAAAACTTGCAG CTTTCTACACCTCACCGTACAAACGCTCTTCAGCACCATCAGCTATTCCT GTTTTACGAAAACCTCAAACTCCACGTAACTTAAGTGACAGTTTTAAACA TGCTAAAGAAAGCACGGTAAggacttcaaaatttttattgtccCATACTG TAgttacaatatattttttaatgtatatatttttctagCGTACATGACGT TTTTTATGAACAGGGACATATTTcttctgctttttcaaggaagAAAAGTG AAACTGTAAAAAATGGATCTTTcgttaaaaagatttttacaagattttga aCTGTCAAAAAATGGCCTCTCAGTAAAAAGACTTAGTAATTTTtagagaa aatgaaagtgaagtgATCACGTGATTTGTAGATATCAATTTTGCAGCTTT TcatatattatttttatatgtatatatttttcttgtgtATATGACATTTT CTGTGTATAT Run BLAST on NCBI protein sequence of TCONS_00007729-protein >TCONS_00007729-protein ID=TCONS_00007729-protein|Name=TCONS_00007729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MDMSSETLQKISKPPNMYMQHLLSHLNIVDKATFWRTMTAFRGIAVPFIS TTKFNEKGARETIYSPYHQYINRAFMKVANYVTPFYDQCSSDNSLVDAMT TVKEIQEKTAVDTQDSSYYLMQMILAFCDSQLFIEPVVKQGKIGKACRGY TFGDYEISDELMAEYHAMRSVVKSPSYHTIHATTPIGVNG Run BLAST on NCBI transcript from alignment at sc0000079:279928..284555- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007729 ID=TCONS_00007729|Name=TCONS_00007729|organism=Clytia hemisphaerica|type=transcript|length=4628bp|location=Sequence derived from alignment at sc0000079:279928..284555- (Clytia hemisphaerica) TGATAATAATATTGCTCTGGGCAAAAAATCTGATAAAGTTCTTTCCTACT
TTGCTCTCAATGCTACTTTGAAGTACTGGTGGCAATACATTCGTCTACAG
AAACAATATAAAACTGAGGAGGCCCGGCCAGGGGGTAAACGAGCTGTTCT
ACAAATCCTTACAGGATACAAGGACCATTGAGACGTATATAAATGTGTAC
ACTGTAGAGACTACAGGTAAATGGAGTAGCAGGGTAGCCAAGTTAAAGGA
CTGGTATGGAGCAAGTGAAGCTGCATATATTGAGAAAGTCCGCAGGGATG
AATGGACACATTATTCCATGAGGCTTAGTGATTTGTTCGAAGGAGTCGTC
ACCGCCCTTTCGGCCACAGATAAGGACCGATTGAGTATTTTGCTCACTTT
GAAAAGGAGTTTACCAAAAAGCTACCATATGGCGGATTGGTGAGTAGGAT
ATCGATCATTAATCTTTAATAAAATGAATTAAGATTTGAAAACGCATATT
TGTCATACCCGTTCTTCTTTCAGGTATATTCGCAAACAAGAGGGTGTATA
GAAATGGCGGATATCGCTAGCAAGCAGATGGGGTTTTTTATGGCAAATAA
CGATGACGAGGTGTACGGACCAATGCTCAATAACATTCAGGACTTCATGG
GCGGGTTTGACCTTTTCCAGTGTGATAAAGAAATATTATCATATTTGCAA
GCTATTCAACAAGCAAACCCGCGACTCATTGCAACTCCTAAGTAAGTATT
GGTTATATTAACGCGCCCGTATATTAACTTGGGATATAATCTGCTGTTAC
ATACATAAGCCCTCATTCATTTTTAGAATGGATATGTCAAGCGAAACCTT
ACAGAAGATATCGAAACCACCTAACATGTACATGCAGCATCTGCTCAGCC
ATCTCAATATCGTGGACAAAGCGACATTTTGGAGGACAATGACCGCATTT
AGAGGTATTGCAGTCCCATTCATATCAACCACGAAATTCAACGAAAAAGG
AGCTCGTGAAACAATATACAGTCCGTACCATCAATACATTAACCGCGCCT
TTATGAAAGTGGCTAACTATGTAACCCCCTTTTACGATCAATGTTCCTCC
GATAATTCACTCGTTGATGCGATGACCACGGTGAAGGAGATTCAGGAGAA
GACAGCTGTTGACACACAAGACTCATCGTATTATCTAATGCAAATGATAC
TTGCATTCTGTGACAGTCAATTGTTCATTGAACCCGTTGTCAAACAAGGG
AAGATTGGCAAAGCGTGCAGAGGATATACGTTTGGTGACTACGAAATCAG
CGATGAATTAATGGCGGAGTATCATGCTATGCGTAGTGTCGTCAAATCGC
CATCATATCATACAATACACGCTACAACACCCATAGGGGTAAACGGGTAA
GTCTATTAGCTAATGGGTAAATGCAATATATGAATGTAGAAACTAAACTA
TATATTTCAGGCAGCAGCACGACAAGAATAATAGTGACTGTCATTTTTTA
TAGATCTGCCATAACGGACAAAGCATCAGCAAAGAAGTATCTCAGAGGTT
TAATACAAACATTGAGGAAGCACCGACATGACATTACAATTATATTACAG
AATGTTTCGACAATGACACAATTGGACGTGAGTATAACAGTATGTGTTAA
CTATACGATTGTGTTAGTGTCTGACAGGGGAGTATTGATATTCGTGTCTA
CTGTTGTTTAGAACTTTCTGAAGGCAAACGCACCACGCCCGCCAACGGTA
AATCATTGCGAATGCTGTCCGAAGGGCAGGAAACATATAGACGGTATCAA
CCACTACGACATAATGGAGTCGATTGTCAAACCGAAGCCGAAGAGACATG
TTACCCTACTAAATGGTCCATCGCATACATGTAAAAGCTCGTATGTTGAA
CGTACGTCAGAGGTGTTCGGCGGCTGCTATTCATTGACAGGCAATGTAAA
AGCTGGGGAATTCGACTTTAGCCAAATGATTGCAAGTCCAGAAAGAATCA
CCTTCCTGGACGAAATGGACTCCATTTACATGATGCAAAATACCGGTAAA
TATCAAATATTTGGCATTACCCTCCATATGAAGGACACTGTATCTATATA
ATATTATCGAATTTCCTTTCAGGTGCCATGAACCAATTCTTTGATGGCAT
AACACAGAAAATACATTGTAACATCAAATATGGGAAGATAAAGGAAGTTT
CCACGCCCAAATCAAAACATACGATTATCACAACGAACGACCTTAAGCGT
TATCTGGCACCAACAACGAACGAAGATTCAGTGGAATTACAAATGTGCAA
GAAGCCAGTGCACAGGTCAGTTTACTTTATTAGCAAACTGATATTTTCTT
TAATGAGTTGTTCTCCTACAAATAATGAGCTGTAATCTTTGCCATAGGTT
CGCACAGCGAGTAACAGAATACAGACTACGTTTGTTAATCACACCCGATG
CATCGGAAGCAACACGACGAAAGTATAACTACGATGCAATTGGAGTAATA
GCGCACTTTCTATATAATTGCCTGTCGGACGATGGAACACCATCATCGAT
GAAAGCCAACGAAATCATGGAACATATCATAGATCGTTGCAGTAATATAT
TTCCCGCAGAAGCGAAACAGGATAGTGACCTACCACCGGTAAAAATAAGG
AATATACATTGGGCGAGTGGACAAGAGAAGAAGTACAGTATGTGCTATAA
TGCGATGAACCTGTTGCCCCCGCCGTTGCCATGAACAACATGAATCATAA
TTCCACTCTGTTGGACGATTTGAAGCAACATCATACGAACGGTATCGTAT
TTCTCGCCAGCGAGAACTATAGAGGGACAGTAGAACATTTCAAATATTCT
GCTCAAATCTATCAAGCTAGATGTGCGTTCATGACTGCAGACGTACTGCG
CCAAATGATAGACGAAGGAAATTAGAGGAATATTCCATTGGCGAGAAGGG
ATATCGAACGACTACAGGCTTCGTTCCCTCTCAATCCAGCGCATATAGAC
GACGAGCAAAGAATGTACATGAGAAGGGCACACATAGAGAAGCTCTTTGA
GGAAAATGGTATAACAACCGACGACGCCCACGACGCCACCGCCGAACGCG
CTCCATCGCACCACGCCGACGATGGTCAACAACCCGGTCCATCATCTCAC
AACAGAAAATGAGAAAACGCAATTTGTAAGCAATCTTTATTTTTATTCTC
TATTCTTTCCTTTTCAGTTAAAAATGAAATATATGTTGCCAGAACCATTA
CCTGACTTTGACGAATATGTACGGTTACACCTACATGAAAATGATGATAT
AATCCATATGCTTTATAGAATTGCAAATAGCGAGGACGAACAAAAAGCAA
ACTGTAATCTCAAACGGATTGGCATTGCAATGAGACATATAGTATTCAAA
ATACATTATAAAAGGACAGGAATAACCGAGAGCTTAATACGGCAGTTGAA
CAATATTATCACAGGGAAACCCGTTTGGTATAGTCCTCCCTATATCATTT
GCAAGTGCGGCTACCATAAAAAGAGAAACAAATTATTCCGGTACTGATAC
CAAAGCTAAACAAACCAAGCCAGAATGTACCAAAAGTACACCAATATCAC
CAAGCAGTGTTAATTCAAAACTTTTGTCGTCAAGGACATTTTCACACGCT
GGAATGTAAACAAAGATATCGGTGAGACTTTGATGATATTTTTTCCCATT
GGCAATTTTCAAATTGAATTTATTGTTGATTTCTTCTTTGTTATTATATA
TAGGATGGTACTGTGTATTTTTTTGTTATGAGTTCATAGTAAGATGTTCT
CAATTCTAGTCATAAGGAACGTGTCAAACTGGAGTTCTGGTTGACAGGTA
ATTTGAAGGTTTCATCACTCAGAATATGTATTATTATAGTGAGTAGTTAT
TTTACAGTAACGCTCTATTCTTATTTTAAACGTCCTCAGCCATCAACGCA
CAAGACAAGTATTCCACGCTCTATTCCAAGGAATATTCAATCCCTGTCAC
CAAAAAACAATCCAAACGAGAAAAACTTGCAGGTATATAAATTTCATTTT
AGTAGTATATACAGTAGATTAAAAGACATTTCAGAATTACATTTAAGATT
ATTCTTTCTAGAGTGCTATTTTTGTTTAATGTTTGTTCCTTAACCTTTGA
CCCCTGTTACTTTTTTAGCTTTCTACACCTCACCGTACAAACGCTCTTCA
GCACCATCAGCTATTCCTGTTTTACGAAAACCTCAAACTCCACGTAACTT
AAGTGACAGTTTTAAACATGCTAAAGAAAGCACGGTAAGGACTTCAAAAT
TTTTATTGTCCCATACTGTAGTTACAATATATTTTTTAATGTATATATTT
TTCTAGCGTACATGACGTTTTTTATGAACAGGGACATATTTCTTCTGCTT
TTTCAAGGAAGAAAAGTGAAACTGTAAAAAATGGATCTTTCGTTAAAAAG
ATTTTTACAAGATTTTGAACTGTCAAAAAATGGCCTCTCAGTAAAAAGAC
TTAGTAATTTTTAGAGAAAATGAAAGTGAAGTGATCACGTGATTTGTAGA
TATCAATTTTGCAGCTTTTCATATATTATTTTTATATGTATATATTTTTC
TTGTGTATATGACATTTTCTGTGTATAT Coding sequence (CDS) from alignment at sc0000079:279928..284555- >TCONS_00007729 ID=TCONS_00007729|Name=TCONS_00007729|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000079:279928..284555- (Clytia hemisphaerica) ATGGATATGTCAAGCGAAACCTTACAGAAGATATCGAAACCACCTAACAT GTACATGCAGCATCTGCTCAGCCATCTCAATATCGTGGACAAAGCGACAT TTTGGAGGACAATGACCGCATTTAGAGGTATTGCAGTCCCATTCATATCA ACCACGAAATTCAACGAAAAAGGAGCTCGTGAAACAATATACAGTCCGTA CCATCAATACATTAACCGCGCCTTTATGAAAGTGGCTAACTATGTAACCC CCTTTTACGATCAATGTTCCTCCGATAATTCACTCGTTGATGCGATGACC ACGGTGAAGGAGATTCAGGAGAAGACAGCTGTTGACACACAAGACTCATC GTATTATCTAATGCAAATGATACTTGCATTCTGTGACAGTCAATTGTTCA TTGAACCCGTTGTCAAACAAGGGAAGATTGGCAAAGCGTGCAGAGGATAT ACGTTTGGTGACTACGAAATCAGCGATGAATTAATGGCGGAGTATCATGC TATGCGTAGTGTCGTCAAATCGCCATCATATCATACAATACACGCTACAA CACCCATAGGGGTAAACGGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007729-exon-sc0000079-1575043694:282241..284555 | TCONS_00007729-exon-sc0000079-1575043694:282241..284555 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1575043694:280524..282158 | TCONS_00007729-exon-sc0000079-1575043694:280524..282158 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1575043694:279928..280387 | TCONS_00007729-exon-sc0000079-1575043694:279928..280387 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1510915933:282241..284555 | TCONS_00007729-exon-sc0000079-1510915933:282241..284555 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1510915933:280524..282158 | TCONS_00007729-exon-sc0000079-1510915933:280524..282158 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1510915933:279928..280387 | TCONS_00007729-exon-sc0000079-1510915933:279928..280387 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1491911889:282241..284555 | TCONS_00007729-exon-sc0000079-1491911889:282241..284555 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1491911889:280524..282158 | TCONS_00007729-exon-sc0000079-1491911889:280524..282158 | Clytia hemisphaerica | exon |
TCONS_00007729-exon-sc0000079-1491911889:279928..280387 | TCONS_00007729-exon-sc0000079-1491911889:279928..280387 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000079 | supercontig | sc0000079:279928..284555 - |
Blast
The following BLAST results are available for this feature:
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