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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007726 ID=TCONS_00007726|Name=TCONS_00007726|organism=Clytia hemisphaerica|type=transcript|length=1444bp
caataattcaattttctatgaTGAGATAAAGTTCAACGATGAAACACATC
ATACTTTTGGTTACATTTTTCTCATTGACACAAGGTTGTCAAGATGGTGT
AGATTTTTGTGAGGAATATTATTCTAAAGATAAAGATTATTATTGTTCCC
ATGAATTCCTGAAGATCAATTGTAAGAAATTTTGCGGATTGTGTGTTGTA
ACAACCCCATCACCAGGTGACTGCGTTGACCTAAACGTGAAATGTCCAAT
TTGGGCAGGTGTTTGCTACACTAACTGGTATGTCAAAACCAATTGTAAGA
AATCATGTGGATTCTGTCCTGGCGTTACAAATCCACCTGTTACTAACCCG
CCCTTAAGCAGTTGTGGACGCCCGCAAGTTGCAATGTCCAGAGTTGTCGG
TGGAAAAGATGCTAAAGCTCATTCATGGCCATGGCAAATCGGACTTCACC
GCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCGATGGGTT
GTTACTGCTGCTCATTGTGTTAATGGAATGTCTTTGCTGACCACAAACTT
TACTGTCAAATTAGGAGATCATGACCGAAGAATAAATGAAGGCGAGCAGA
TCATAAAAGTATCAAAAGCTGTTGTCCACTATAGTTATGAAAATTCAAGG
GAATCTAAGTTTGATAACGACATTGCTTTATTACAATTGGAACAACCAAT
TAAATTCGGACGAAATGTTCAACCAGTCTGTTTACCAAGCCAAGGAGATG
CTCCAAAAGTTGGTAGCAAATGTTACATCACCGGATGGGGAAAGATCGGT
CACCAAGGAGGTTCACACACCATCCTTCAACAACTTGGTCTAACTGTTCA
AAGTAAAGAAACTTGCGCAAAACATAATTCGAAGATCGGAAAGATTACAG
ATCGAATGATATGTGCTGCAAACTTCGATACAACCAAGAATCAGTCAGGT
TGTCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTC
ATGGACACTACATGGAGCTGTCAGCTGGGGATCACCAAAATGTGACACAA
AAGATGCAATTAGTGTCTTTGCAAGAGTTGGTCAATTCAGAGACTGGATT
GAGAAAActattcaataatttttcacagTTTTGTTTAAACAAAtaagttt
ctttcaaaaataaaagctGATTGAATCAAATCACTTGATTTTTGCTTTGA
AGTGCTGATTACAAACATTTCCGACATTCGAAAGTTTCTCAAATTAACAG
AATATATCAAATTCATTCTCATAATAGTTCATCTTTATTTGActacattt
tcattaaaatagcgcTGCATATGGAAAGTTGATGAAATTTAAATCCCTAT
ATAAACAGGTGAATTTATCTCAATTTAGAATTTAATTGAAATTggtgaaa
gttttttattcccCCGTTCATTAATTTTCAATTACTCTCGtctg Run BLAST on NCBI transcript from alignment at sc0000079:167112..170691- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007726 ID=TCONS_00007726|Name=TCONS_00007726|organism=Clytia hemisphaerica|type=transcript|length=3580bp|location=Sequence derived from alignment at sc0000079:167112..170691- (Clytia hemisphaerica)
CAATAATTCAATTTTCTATGATGAGATAAAGTTCAACGATGAAACACATC
ATACTTTTGGTTACATTTTTCTCATTGACACAAGGTAAGCCAGTGGGAAT
TTCAAGACTCCCAAGAAAATTCAATACAGGGGTGACCGATCGTTTGCTAC
AGACAAATTGGCGACTTTAAAAGTTTTGTTTTTATATAAGTGTTCCCGTT
TCATATCAGACACATATTTCATATCAGGACAGTGCCTGTATACTATGGTG
CTAGTTAGCAAGGAAAGTGGATTCAACTTCAAAATACTGTATGAGTTCTA
CTATGATGAGTTCCCGAGGCAAGAAACTAGTAGTAGTACTTAGAACTATG
TATTTAGAAATAAGAAAATATGATAAACTTAAATCTTTACTTCCTCTCGG
ATACTTGATAGGCGGGGGGTTTGGAAAAATGTCCTGGGTGGAAAACTGAG
GATAATGCAGCAGAATCAGGGCAAATAAGAGAACTTTATAAAAAATTTTC
CCAAGAACTTATTAAGCAGGGGGCTGGAATAAAAATCAAAAAATTAATCC
GCATGGGGCGCTTATTAGGTACCCGAGATTACGCCAGGGTAGGCTATTTT
CAAAACATTCTTTTACCGTGTAGGTTGTCAAGATGGTGTAGATTTTTGTG
AGGAATATTATTCTAAAGATAAAGATTATTATTGTTCCCATGAATTCCTG
AAGATCAATTGTAAGAAATTTTGCGGATTGTGTGTTGTAACAACCCCATC
ACCAGGTAAATATTCATCATATTTATTACGTAATGTTTTTTCGAACACAA
CTCAGTTTTAGCCAGTAGTGGTAATTTTAATCAACTTTCTCTAACTTAAA
TTTCTCAAAATTTGCCACTACTGGCAATCAGGGTGTCTGTAGAAAAAATC
ACATGAATATTTTTTTAAGGGTTTTCTATCAGCTACCTTCCCCTGGAGGA
CTAACTAAATTATAGCAAACAGATGTCTTTTTGGAGTAGATTTTCCTGGA
GCCTGAAAGTGGATGCTAGAGATAAGATGTTTATTTTTGGATTTTTTATT
TACCATTTTTTATTCATTTTATATACATTGATCAAGCAAGCTGAATAGAC
TGGGTTAGGATACATTATTTATGGTCTTATGCTATGCCCTGTGTCACAGA
CCCAACCTTGACCCCCTTCTTGGCCGATATTTTGTCCTGGTGTGATAAAT
ATAGTAAAATTTCAGTCCCACTTGGAAATTTGGAGACTTTGATTAAATTC
CCATTTGAAATTCAACAAATAATATTGCACTTCAAAATCGTCCCCTATGG
AATTTTTGAAAAAAAGTTTCAACGGGGCTATGAGACATGGGTGTTTTCAT
AAAATGATGGTTGATTCTACACCTGGTTATTGGTGGAATATTGGATTTTC
GATTTCGATTCGCTGCTCCTGTCCTTTGAGAATATAAAATAAATAATCAG
ATAAGTGGCAAGTCTGAGGGTGTAGTCAAAATAATGACGGATAATGATTC
GTATTGGGGAGCGTAAGAGTATCATTTAATGATTTTTAGAAGGTGACTGC
GTTGACCTAAACGTGAAATGTCCAATTTGGGCAGGTGTTTGCTACACTAA
CTGGTATGTCAAAACCAATTGTAAGAAATCATGTGGATTCTGTCCTGGCG
TTACAAATCCACCTGTTACTAACCCGCCCTTAAGCAGTTGTGGACGCCCG
CAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGATGCTAAAGCTCATTC
ATGGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAG
GTTCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTTAAT
GGAATGTCTTTGCTGACCACAAACTTTACTGTCAAATTAGGTAAATCAAA
TTCCATTCAATCAAAAAGCAAAAAAATACTTTAACAATAAAAAAGGCTCA
ACTAGTTTTCAAAAGTAAAGAAATTTAATTTAAATAGCTAATCTCTCCCT
TTGTATCCGTTTGATGTATAAAACGGTAGAAAATCGACAGAAAATTGATA
GTTTTAAAACATTGCTTGAAAAATAGCCTTCAGATACCCGCGCATTGATT
TCAAAATCGGCATCGCAAGAGGACTGTCTACTTTCTGTCAACTTCCGTCA
ACAATTAGGGAAGATCAGGCACACACGTCCAAAACAAGATGTTACAGGAG
TAGAAGAAAATGTTTATATCATAAAGCTAAAGGTTATGTTAACAAACCCT
AACTTTTTGAATCTTTTAGGAGATCATGACCGAAGAATAAATGAAGGCGA
GCAGATCATAAAAGTATCAAAAGCTGTTGTCCACTATAGTTATGAAAATT
CAAGGGAATCTAAGTTTGATAACGACATTGCTTTATTACAATTGGAACAA
CCAATTAAATTCGGACGAAATGTTCAACCAGTCTGTTTACCAAGCCAAGG
AGATGCTCCAAAAGTTGGTAGCAAATGTTACATCACCGGTAAGCTAAGCC
AAGTAGTCAAATAATATTCAATTAAACAGAGTTTTGAATGGTATGATGAC
AAGGATCGTTAGTTAGTAATGTCGTTATGTGATTTTCTAAATTTGCCCAA
GCAAAAATGCTGGGATCTCTGATTATTATCGGGATGGAGGCAAAATATCC
TAATTTTGTAAATTTGTGATATTTGAAAAGGTACCTCTAAGTGGATTTTA
AGGGTATATTATATTATATATATATTAAAATATTATACGAAATTTCTAGA
ATCTAATAGTATCCTCCATCGAATATTATATATTAAAGTTTTATAAGGCT
TTCAAATACATAATTTTAGGTTTGCATTATCATTCTCTCGGCCCTAAATT
TAATGATCACGTATATATATACCGAGGCTTTAACTTTTTTTTATAAGTCA
TCATTTCAATAAATTTAAGGATGGGGAAAGATCGGTCACCAAGGAGGTTC
ACACACCATCCTTCAACAACTTGGTCTAACTGTTCAAAGTAAAGAAACTT
GCGCAAAACATAATTCGAAGATCGGAAAGATTACAGATCGAATGATATGT
GCTGCAAACTTCGATACAACCAAGAATCAGTCAGGTTGTCATGGTGATTC
AGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTCATGGACACTACATG
GAGCTGTCAGCTGGGGATCACCAAAATGTGACACAAAAGATGCAATTAGT
GTCTTTGCAAGAGTTGGTCAATTCAGAGACTGGATTGAGAAAACTATTCA
ATAATTTTTCACAGTTTTGTTTAAACAAATAAGTTTCTTTCAAAAATAAA
AGCTGATTGAATCAAATCACTTGATTTTTGCTTTGAAGTGCTGATTACAA
ACATTTCCGACATTCGAAAGTTTCTCAAATTAACAGAATATATCAAATTC
ATTCTCATAATAGTTCATCTTTATTTGACTACATTTTCATTAAAATAGCG
CTGCATATGGAAAGTTGATGAAATTTAAATCCCTATATAAACAGGTGAAT
TTATCTCAATTTAGAATTTAATTGAAATTGGTGAAAGTTTTTTATTCCCC
CGTTCATTAATTTTCAATTACTCTCGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007726-exon-sc0000079-1575043694:170608..170691 | TCONS_00007726-exon-sc0000079-1575043694:170608..170691 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1575043694:169937..170068 | TCONS_00007726-exon-sc0000079-1575043694:169937..170068 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1575043694:168802..169149 | TCONS_00007726-exon-sc0000079-1575043694:168802..169149 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1575043694:168204..168422 | TCONS_00007726-exon-sc0000079-1575043694:168204..168422 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1575043694:167112..167772 | TCONS_00007726-exon-sc0000079-1575043694:167112..167772 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1510915933:170608..170691 | TCONS_00007726-exon-sc0000079-1510915933:170608..170691 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1510915933:169937..170068 | TCONS_00007726-exon-sc0000079-1510915933:169937..170068 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1510915933:168802..169149 | TCONS_00007726-exon-sc0000079-1510915933:168802..169149 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1510915933:168204..168422 | TCONS_00007726-exon-sc0000079-1510915933:168204..168422 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1510915933:167112..167772 | TCONS_00007726-exon-sc0000079-1510915933:167112..167772 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1491911889:170608..170691 | TCONS_00007726-exon-sc0000079-1491911889:170608..170691 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1491911889:169937..170068 | TCONS_00007726-exon-sc0000079-1491911889:169937..170068 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1491911889:168802..169149 | TCONS_00007726-exon-sc0000079-1491911889:168802..169149 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1491911889:168204..168422 | TCONS_00007726-exon-sc0000079-1491911889:168204..168422 | Clytia hemisphaerica | exon |
| TCONS_00007726-exon-sc0000079-1491911889:167112..167772 | TCONS_00007726-exon-sc0000079-1491911889:167112..167772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:167112..170691 - |
Blast
BLAST of TCONS_00007726 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 4.567e-52 Identity = 103/250 (41.20%), Postives = 146/250 (58.40%), Query Frame = 3
Query: 372 PQVAMSRVVGGKDAKAHSWPWQIGLHRNGGFMCGGSIINSRWVVTAAHCVNGMSLLTTNFTVKLGDHDRRINEG-EQIIKVSKAVVHYSYENSRESKFDNDIALLQLEQPIKFGRNVQPVCLPSQGDAPKVGSKCYITGWGKIGHQGGSHTILQQLGLTVQSKETCAK--HNSKIGKITDRMICAANFDTTKNQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPKCDTKDAISVFARVGQFRDWIEKTI 1112
PQ R+ GG++A H WPWQ+GL G + CGG+IIN W++TAAHCV + ++T+ GDHDR + E EQ+ + +VH E+ +D+DIAL+QL P+++ V+PVCLP + C +TGWG I GG + LQQ+ + V +E C +++ G IT++MICA F + + C GDSGGP VC++ NG + L+G VSWG+ C VFARV F DWI+ I
Sbjct: 568 PQWLSRRIAGGEEACPHCWPWQVGLRFLGDYQCGGAIINPVWILTAAHCVQ-LKNNPLSWTIIAGDHDRNLKESTEQVRRAKHIIVH---EDFNTLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICAG-FAASGEKDFCQGDSGGPLVCRHENGPFVLYGIVSWGA-GCVQPWKPGVFARVMIFLDWIQSKI 811 HSP 2 Score: 138.272 bits (347), Expect = 2.097e-34 Identity = 88/256 (34.38%), Postives = 127/256 (49.61%), Query Frame = 3
Query: 384 MSRVVGGKDAKAHSWPWQIGLHRNGGFMCGGSIINSRWVVTAAHCVNGMSL-LTTNFTVKLGDHDR-RINEGEQIIKVSKAVVHYSYENSRESKFDNDIALLQLEQPIKFGRNVQPVCLPSQGDAPKVGSKCYITGWGKIGHQGGSHTILQQLGLTVQSKETC--AKHNSKIGKITDRMICAANFDTTKNQSGCHGDSGGPFVCQNSNGSWTLHGAVSW------GSPKC---DTKDAISVFARVGQFRDWIEKTI 1112
SR+ +++ PWQ+ L + CGGS+I VVTAAHC++ +S N TV G++ + ++ EQ I VSK + H Y NSRE DIALL L+ +KFG VQP+CLP D + G C +GWGKI +LQ++ L + C + + + M+CA D C GDSGGP VC+ G W L G SW GS K ++ +F++V + D+I + +
Sbjct: 44 FSRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKDKQEQNIPVSKIITHPEY-NSRE-YMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYSNVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPDW--GMDACQGDSGGPLVCRRGGGIWILAGITSWVAGCAGGSVPVRNNHVKASLGIFSKVSELMDFITQNL 295
The following BLAST results are available for this feature:
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