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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007723 ID=TCONS_00007723|Name=TCONS_00007723|organism=Clytia hemisphaerica|type=transcript|length=685bp
agaaactAGAACAATAGGTGTTCGAACAATTTAACCAAAATCGAACTATT
CAAACTGACGCTTGGTCAAGAAACAAAACACACACAGCACAAATCGAACA
AAAGTTTTGCAAAcagtaaaaaaatatcgaaacaTAAATCAGCATTTACT
TTGCAAAGccataaagaagaagaaaatacttgacaatttattagttttgg
aggaaaaataatatcaaataatTATCATCAAAAAGTTGCAAATATCGCTT
TAAAGACCATTTATTTGGTCGACTAAGCCAATCGAATCCAATCCGATTTT
ACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTTAGAATTGAGAAAA
TTTGGAATAAAAGAGGACAATGGAAAATGAATTGCATGTTTTTGGAAATG
ACGTCCATAATTTAGAACCACCTTTCGACCAAAACATGAACTTCTCGGAA
CGCCGTAAAAGGACTTCTTACAAGATTGAAGACATTTTGggcatcaaaat
caaaacatcagaTGGAGAAGAAGAAAGCGATGAGAGTATGGAAAACCTCT
CACCGACCACATCTGGTTCTTTAAATGGCTCTGAAGACACTCATGACATG
TTACAATGGCTGATTCAAGACATGACATACTGTAACGACGATTAACGACT
ATCTGTACAGTTGCCAAGACAGACACCATAATACA Run BLAST on NCBI transcript from alignment at sc0000079:18582..22776- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007723 ID=TCONS_00007723|Name=TCONS_00007723|organism=Clytia hemisphaerica|type=transcript|length=4195bp|location=Sequence derived from alignment at sc0000079:18582..22776- (Clytia hemisphaerica)
AGAAACTAGAACAATAGGTGTTCGAACAATTTAACCAAAATCGAACTATT
CAAACTGACGCTTGGTCAAGAAACAAAACACACACAGCACAAATCGAACA
AAAGTTTTGCAAACAGTAAAAAAATATCGAAACATAAATCAGCATTTACT
TTGCAAAGCCATAAAGAAGAAGAAAATACTTGACAATTTATTAGTTTTGG
AGGAAAAATAATATCAAATAATTATCATCAAAAAGTTGCAAATATCGCTT
TAAAGACCATTTATTTGGTCGACTAAGCCAATCGAATCCAATCCGATTTT
ACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTTAGAATTGAGAAAA
TTTGGAATAAAAGAGGACAATGGAAAATGAATTGCATGTTTTTGGAAATG
ACGTCCATAATTTAGAACCACCTTTCGACCAGTAAGTTATTGATTGTGTT
AAAATGATAAAATTCTTCTATTTTTTTCTTTCTTTTTTTTCCTTATTGGT
TTTATTTTTGTTTACTAAAATAAATACCGCAATTATGACTAGCCCCACGG
AAGCTCTACCACAAGTAAGAAAAAACAGTAGCTTCAAACTAAAGAAGATA
CAAAAAAGCTTTTAAACAGTAGTTAGTAAGAATTTCAAAAATTCCCTTAC
TCATCGCTTGGAAGGAATCCGGTGGATATCAGGGGAACCCCCCCCCCCCA
CTGTAAAGAAAATTTTAGTCACTTGGGAATTAACTAGCTAACATTTGAAA
GACAATTTTCCCCGAATGATTCGTGAAAAAGTTTTGTTATCCAAAAAAAC
AAAAGCCTCCGTTAAGCTAGACTCCTCCCCCTTGATTACAAATTTATCTG
ATTTTGATGTAATAAAGCAAATAGACACCCCACAAATCGAATAAGATTTG
GGCCTTATGATCCCCTTATGATTAATCACCGTACTCTTTTGTGCTTAATT
GTAGGGGGGGTCACTTTGCAATTTTTCGATAAAAACACCACCTGCTTACT
CCAACCCTCCCCCCCAAACCAAATGGTCAATCATTATCGTAAAATTTTAA
ATCAAATTACTAAAGGGCTATCCAAGGAGCCTCTTGGATTTTTTTGGCGA
AATTTTGAAGAAAACACCCCTAGATTTCAGATATGTAGAGTAGGTGTTCA
ATATAACAATTTGAACAAGATGTACTTTTTCTAATCGATTCCGATATACA
TATATAGCATTTTCTTTACAATAGAAACATGAACTTCTCGGAACGCCGTA
AAAGGACTTCTTACAAGATTGAAGACATTTTGGGCATCAAAATCAAAACA
TCAGATGGAGAAGAAGAAAGCGATGAGAGTATGGAAAACCTCTCACCGAC
CACATCTGGTTCTTTAAATGGCTCTGAAGGTAGGTTGTCTTTATAGAGCA
TCTAACAGGGGAAAAGGTATTAGCGAGGACATCAGATTGACTAAAGCGAT
TTGGAATAACCCTCAGTTTTGACTCGCAAATTCGAGGACGGTAAAAACTT
GTTTACCGCAGTCCTCAGTTTATTAAGATCTTTAGAAATCAGAAGTTAAC
CGTCTCCGTTGTAGAAAAACAAATAAACACACAACCTCGTCCCCGTGTAT
CCCAGGCTTTATTTACGTTACTTATCGACTCCAGAGAATACAGTGGTGTT
GGCAGGTGCGAGTTCCACCTCTCAGAGGGGGAACTTCTCAAAACAATACT
TCATAAAAAAATATGGCGTTACAAAGTTACACTGCAGTGTAATGGTTTCA
AATCCAGGAACAAATGAAATCTGATGTTTTGTTTTTGAATTACGTAATCT
TAAGCGTTCGAAAAACCGACAATGCCAGGATATTATCTAATGCATCAAAA
AGCATCAAAAAGCTGATAATGCGCAGGGAACGAGGTTGATAAACACCTAT
TGCTGAAATCTTTTTGAAATTTCACATGCAGTTGAAGTATAAAAATGTGC
CTAATTTTCTGATTAAGAGGTTGAAAATAGGAACTTTTCTTGAAACATTC
TTCAACTTTGACATTGTATTTAGATCATAAAATCACCCTCGAATAAGATT
TTTTTAGGAAATAAATGGCAGAACATTTGCAGCAAAGAAAAATGTCTTTT
AACAATGAACTGAACAACTGCAAACATAAAGTTTCAACAGAACCAAACCA
AATTGACCTTAACCTGAAGAAGAGTTTATTATTCCAATAATAATGTTGTC
GAGTAAACGACAATAATAGACAGCAGCAAAACTATAACATTTAGTAACCG
TCGAATCCACCAGAGGCTGATACTGTCAATAAAACTGATTTTTTATGACA
ATAAAACTGACTTTTTTAATTTATGACAATAAAACTGACAGTCAGATAGG
AAAAAGAAAGAAAACAAAATTTGGGATTGATTTTAAGTGTTTACTTACGG
TACCACCAGAATACAATCAGCTATTGGCAACTTCATCGTGCTAGCTCGTT
AAATGAAATGACTTCTCCTGAAAAAGTGAAAAAAAATGTACGAAAATAAT
CCAAGCCAATTCCAAAGATGATCTTGAAATTTCAAAGTTTTACAGAACAA
AATACGGTTAAACCCATGTAATTCAAACTTCTATAATTCGATTCGAATAT
GCACTTAATTTCGAACAGATTTTGTGATCCCCTCAGAAAAAACCTTACTT
ACAAGAAAAATCCTTCTCATTCATACCCATGTAATTTCATTTCAATTGAA
AAGATTTCAAGTTTCATCAAGAAATTTTGATGATGCAATTCATATTTTCG
AATTTTTTTAGTTTTTGAATCTGACGGAAAATTCCATTTTTTGTCAATGG
AACTTTTTCGACATTCTTATATCATTGTATCGCAACCGAATTTGTTTTTC
TAGCCACCATAAAAACTTTTTTGAAAGATCACGAGATTTTTTTCTAAATT
TCAAAAAAATTGTCCTTGTCAAGATTACTGATAGTATTTCAATATTCAAA
ATTCAAAATAGAAAAATGTGCAAAAGTAAACCTGGAAGAGTCTTTTTTCA
TTAAATTTAATTCCAACCAAATTCTCGATCCCTTGACAATTAATTCGACT
TACAACTGCGACATGAAAGTGGTACTCCTGTGCGGAAATTCGAACCCTGG
CCGCCTGGGTGAAAACTAGAAATTCTCGGACTAAATTTTCGACCCTTGAG
AATTGGAATTGGTAATTTAAATGGGTTTAACACTAGAGGGACGGGAAGGG
TGGCAGTGAACACAGAATCTATTTACAGTAGTTTAGATCACTCGCTGAGT
AATGGTCGAAGAAGGATCAAAGTATAACGTTTTTAAAGTCAAAACGGGGA
TAACAGCGGGGCTTCATATTCCTATAATAGCCTCCTATATATTTCGGAAG
GTCATTATCTGATTTTGACACGGAAGGGGTTGAGTTTTTGGGCCTCGAAA
CGGTGGGTGATGGTGTTTTCAATTGGTTAGAGTTTTGTGTAAGAACAGAG
AAACGCCGGTAGCAACAGAAACGAAGCAACGATGGCTTTAAACAAAACAA
TAAGAAATGAAGATAAGACTCAAAAAACTCGTACTAACATTACAAACAAA
CCTAAACAAAACAGAACAAACCAACCAGATAACATCCCTCCTATTGTAAC
ACTGCAAGGGTTAAGTTTGACATAAACCACGTCCTCAAAATATTCTTAGT
TTTTGGTCTTGGCTGTAATAATAAAGAAGGGAGTCGCAGTGTTGTCGTGT
TTTCAATTAGTTAGAGTTTTGTGTAAAGCGCAATGATAAGAACAGAGAAA
CGCCGGTAGCAACAGAAACAAAACAACGATAGCTTTAAACAAAACAATAA
GAAACAAACAAACTAACATAACAAACCAAACCAAAACAATGTAAAAACAA
CTAAACAAAACAGACACACACAATACACTGAGATTTCTAAGAATTCGCTG
AATCTAGAATTTTTCATTCACCAGTCGATCAAAAACGAAGCAAAAACCCT
GCGAAACTAAAGTTTTTCATACAAATATTAGCAAGGTGATTTTCACAAAT
ACGACCCCCAATAATAGAGCATTTACAGTATCTTCATTCTTTTACAAAAG
CCACTGATGTCTATTTTATAACATTTTTCATTTTGTTACACTCCAGACAC
TCATGACATGTTACAATGGCTGATTCAAGACATGACATACTGTAACGACG
ATTAACGACTATCTGTACAGTTGCCAAGACAGACACCATAATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007723-exon-sc0000079-1575043694:22346..22776 | TCONS_00007723-exon-sc0000079-1575043694:22346..22776 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1575043694:21398..21552 | TCONS_00007723-exon-sc0000079-1575043694:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1575043694:18582..18680 | TCONS_00007723-exon-sc0000079-1575043694:18582..18680 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1510915933:22346..22776 | TCONS_00007723-exon-sc0000079-1510915933:22346..22776 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1510915933:21398..21552 | TCONS_00007723-exon-sc0000079-1510915933:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1510915933:18582..18680 | TCONS_00007723-exon-sc0000079-1510915933:18582..18680 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1491911889:22346..22776 | TCONS_00007723-exon-sc0000079-1491911889:22346..22776 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1491911889:21398..21552 | TCONS_00007723-exon-sc0000079-1491911889:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007723-exon-sc0000079-1491911889:18582..18680 | TCONS_00007723-exon-sc0000079-1491911889:18582..18680 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:18582..22776 - |
Blast
The following BLAST results are available for this feature:
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