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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007722 ID=TCONS_00007722|Name=TCONS_00007722|organism=Clytia hemisphaerica|type=transcript|length=1876bp
caaaaagaaacaaagaaactAGAACAATAGGTGTTCGAACAATTTAACCA
AAATCGAACTATTCAAACTGACGCTTGGTCAAGAAACAAAACACACACAG
CACAAATCGAACAAAAGTTTTGCAAAcagtaaaaaaatatcgaaacaTAA
ATCAGCATTTACTTTGCAAAGccataaagaagaagaaaatacttgacaat
ttattagttttggaggaaaaataatatcaaataatTATCATCAAAAAGTT
GCAAATATCGCTTTAAAGACCATTTATTTGGTCGACTAAGCCAATCGAAT
CCAATCCGATTTTACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTT
AGAATTGAGAAAATTTGGAATAAAAGAGGACAATGGAAAATGAATTGCAT
GTTTTTGGAAATGACGTCCATAATTTAGAACCACCTTTCGACCAAAACAT
GAACTTCTCGGAACGCCGTAAAAGGACTTCTTACAAGATTGAAGACATTT
TGggcatcaaaatcaaaacatcagaTGGAGAAGAAGAAAGCGATGAGAGT
ATGGAAAACCTCTCACCGACCACATCTGGTTCTTTAAATGGCTCTGAAGA
CGATAGTGACGTCTTTGACAACAGCCCAACACTCGACCACAACACTTTAA
TGACAACAGTAGCTGACCAACATGTAAATAGTCTCAGTGCATCCCCTACC
AACAACTTTATGGCTATGTCCGGTGTTACACATAACCGGCCACGGATACC
GATCAAGAAACGGCGCTACCGGACCACATTCACCACGCATCAACTTGAAG
AACTGGAAAGCATATTTAACAGGACGCACTACCCAGATGTCTTTCTAAGA
GAAGAAATTGCGTTGAAATTGGGATTGACTGAGGCAAGAATTCAGgtATG
GTTTCAAAACCGACGTGCAAAATGGCGGAAACGAAACAAAACCAACGTTA
ACCAACCACATCACATTCCTTTCGGTTCGTCCGCTACAAGTAACCAAATG
AACCCATTGCAAAGTAATACAGCTATGCGACTGATGAATAGTAAGTCAAA
TTACGGTGGAAACAATGCTCCAGCTTTAATGGGTTACCAACAATCACCCA
TGGTGTATAACAACATCTTGAAATCGTTATCTAATCAACCCAGCCCAAAA
ATGATGAGCGAGAATAGAAATAACTCCAATAACCTGTTTTGGTACAGGTG
TGGAGCCAACGCCCAAGCACCTCAACGAAATTTTTTCCCCTGCCCTACAG
ACTCAAGGNTGTGGAGCCAACGCCCAAGCACCTCAACGAAATTTTTTCCC
CTGCTCTACAGACTCAAGAAATATATCACCAGGAAATAATACAAATTTCT
ATTTTGGTGAGAAAGTTGCAGATGAATCACAACCTAACTGGTGGGATATG
CAAAGTCAAACCGTATGAGTATCTGTGGCAGAGTTTTTCGATGGATTTTG
AAGCACCGCAAGATTGCTTTGATGAACCATAGAGGTTACCTAGGGATACT
AAAACCTTTCAATGAGAGACAAAGATACTGGTGAACCCGTCAATAAGTGA
CGGGGCTTGTACTTTTTTGGATCACATAAGGTAGTGGAAGAAAGACTGAT
AAAAACAGAAAACACTGGCATAACCTTCGGATGATAACAATAAATTTATT
CCTAATTTCACGGAATTATGTCAATTGACAAGAGTGGCCATGTGCCGCCA
TGTGTTACAATTAATTATGGGATCTTAATGACATAGAAGGAGAGCAATCC
ATTTTGTCTGTGGTATTTATTGACTGATATTGGAATAAATctacatttta
aggcttatacTCGAATTCTGCAATACAAGATTTGACGAGGGCTTCAAGAT
GCCTGATAAAAAAGACGAATCCTTTT Run BLAST on NCBI transcript from alignment at sc0000079:15356..22789- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007722 ID=TCONS_00007722|Name=TCONS_00007722|organism=Clytia hemisphaerica|type=transcript|length=7434bp|location=Sequence derived from alignment at sc0000079:15356..22789- (Clytia hemisphaerica)
CAAAAAGAAACAAAGAAACTAGAACAATAGGTGTTCGAACAATTTAACCA
AAATCGAACTATTCAAACTGACGCTTGGTCAAGAAACAAAACACACACAG
CACAAATCGAACAAAAGTTTTGCAAACAGTAAAAAAATATCGAAACATAA
ATCAGCATTTACTTTGCAAAGCCATAAAGAAGAAGAAAATACTTGACAAT
TTATTAGTTTTGGAGGAAAAATAATATCAAATAATTATCATCAAAAAGTT
GCAAATATCGCTTTAAAGACCATTTATTTGGTCGACTAAGCCAATCGAAT
CCAATCCGATTTTACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTT
AGAATTGAGAAAATTTGGAATAAAAGAGGACAATGGAAAATGAATTGCAT
GTTTTTGGAAATGACGTCCATAATTTAGAACCACCTTTCGACCAGTAAGT
TATTGATTGTGTTAAAATGATAAAATTCTTCTATTTTTTTCTTTCTTTTT
TTTCCTTATTGGTTTTATTTTTGTTTACTAAAATAAATACCGCAATTATG
ACTAGCCCCACGGAAGCTCTACCACAAGTAAGAAAAAACAGTAGCTTCAA
ACTAAAGAAGATACAAAAAAGCTTTTAAACAGTAGTTAGTAAGAATTTCA
AAAATTCCCTTACTCATCGCTTGGAAGGAATCCGGTGGATATCAGGGGAA
CCCCCCCCCCCCACTGTAAAGAAAATTTTAGTCACTTGGGAATTAACTAG
CTAACATTTGAAAGACAATTTTCCCCGAATGATTCGTGAAAAAGTTTTGT
TATCCAAAAAAACAAAAGCCTCCGTTAAGCTAGACTCCTCCCCCTTGATT
ACAAATTTATCTGATTTTGATGTAATAAAGCAAATAGACACCCCACAAAT
CGAATAAGATTTGGGCCTTATGATCCCCTTATGATTAATCACCGTACTCT
TTTGTGCTTAATTGTAGGGGGGGTCACTTTGCAATTTTTCGATAAAAACA
CCACCTGCTTACTCCAACCCTCCCCCCCAAACCAAATGGTCAATCATTAT
CGTAAAATTTTAAATCAAATTACTAAAGGGCTATCCAAGGAGCCTCTTGG
ATTTTTTTGGCGAAATTTTGAAGAAAACACCCCTAGATTTCAGATATGTA
GAGTAGGTGTTCAATATAACAATTTGAACAAGATGTACTTTTTCTAATCG
ATTCCGATATACATATATAGCATTTTCTTTACAATAGAAACATGAACTTC
TCGGAACGCCGTAAAAGGACTTCTTACAAGATTGAAGACATTTTGGGCAT
CAAAATCAAAACATCAGATGGAGAAGAAGAAAGCGATGAGAGTATGGAAA
ACCTCTCACCGACCACATCTGGTTCTTTAAATGGCTCTGAAGGTAGGTTG
TCTTTATAGAGCATCTAACAGGGGAAAAGGTATTAGCGAGGACATCAGAT
TGACTAAAGCGATTTGGAATAACCCTCAGTTTTGACTCGCAAATTCGAGG
ACGGTAAAAACTTGTTTACCGCAGTCCTCAGTTTATTAAGATCTTTAGAA
ATCAGAAGTTAACCGTCTCCGTTGTAGAAAAACAAATAAACACACAACCT
CGTCCCCGTGTATCCCAGGCTTTATTTACGTTACTTATCGACTCCAGAGA
ATACAGTGGTGTTGGCAGGTGCGAGTTCCACCTCTCAGAGGGGGAACTTC
TCAAAACAATACTTCATAAAAAAATATGGCGTTACAAAGTTACACTGCAG
TGTAATGGTTTCAAATCCAGGAACAAATGAAATCTGATGTTTTGTTTTTG
AATTACGTAATCTTAAGCGTTCGAAAAACCGACAATGCCAGGATATTATC
TAATGCATCAAAAAGCATCAAAAAGCTGATAATGCGCAGGGAACGAGGTT
GATAAACACCTATTGCTGAAATCTTTTTGAAATTTCACATGCAGTTGAAG
TATAAAAATGTGCCTAATTTTCTGATTAAGAGGTTGAAAATAGGAACTTT
TCTTGAAACATTCTTCAACTTTGACATTGTATTTAGATCATAAAATCACC
CTCGAATAAGATTTTTTTAGGAAATAAATGGCAGAACATTTGCAGCAAAG
AAAAATGTCTTTTAACAATGAACTGAACAACTGCAAACATAAAGTTTCAA
CAGAACCAAACCAAATTGACCTTAACCTGAAGAAGAGTTTATTATTCCAA
TAATAATGTTGTCGAGTAAACGACAATAATAGACAGCAGCAAAACTATAA
CATTTAGTAACCGTCGAATCCACCAGAGGCTGATACTGTCAATAAAACTG
ATTTTTTATGACAATAAAACTGACTTTTTTAATTTATGACAATAAAACTG
ACAGTCAGATAGGAAAAAGAAAGAAAACAAAATTTGGGATTGATTTTAAG
TGTTTACTTACGGTACCACCAGAATACAATCAGCTATTGGCAACTTCATC
GTGCTAGCTCGTTAAATGAAATGACTTCTCCTGAAAAAGTGAAAAAAAAT
GTACGAAAATAATCCAAGCCAATTCCAAAGATGATCTTGAAATTTCAAAG
TTTTACAGAACAAAATACGGTTAAACCCATGTAATTCAAACTTCTATAAT
TCGATTCGAATATGCACTTAATTTCGAACAGATTTTGTGATCCCCTCAGA
AAAAACCTTACTTACAAGAAAAATCCTTCTCATTCATACCCATGTAATTT
CATTTCAATTGAAAAGATTTCAAGTTTCATCAAGAAATTTTGATGATGCA
ATTCATATTTTCGAATTTTTTTAGTTTTTGAATCTGACGGAAAATTCCAT
TTTTTGTCAATGGAACTTTTTCGACATTCTTATATCATTGTATCGCAACC
GAATTTGTTTTTCTAGCCACCATAAAAACTTTTTTGAAAGATCACGAGAT
TTTTTTCTAAATTTCAAAAAAATTGTCCTTGTCAAGATTACTGATAGTAT
TTCAATATTCAAAATTCAAAATAGAAAAATGTGCAAAAGTAAACCTGGAA
GAGTCTTTTTTCATTAAATTTAATTCCAACCAAATTCTCGATCCCTTGAC
AATTAATTCGACTTACAACTGCGACATGAAAGTGGTACTCCTGTGCGGAA
ATTCGAACCCTGGCCGCCTGGGTGAAAACTAGAAATTCTCGGACTAAATT
TTCGACCCTTGAGAATTGGAATTGGTAATTTAAATGGGTTTAACACTAGA
GGGACGGGAAGGGTGGCAGTGAACACAGAATCTATTTACAGTAGTTTAGA
TCACTCGCTGAGTAATGGTCGAAGAAGGATCAAAGTATAACGTTTTTAAA
GTCAAAACGGGGATAACAGCGGGGCTTCATATTCCTATAATAGCCTCCTA
TATATTTCGGAAGGTCATTATCTGATTTTGACACGGAAGGGGTTGAGTTT
TTGGGCCTCGAAACGGTGGGTGATGGTGTTTTCAATTGGTTAGAGTTTTG
TGTAAGAACAGAGAAACGCCGGTAGCAACAGAAACGAAGCAACGATGGCT
TTAAACAAAACAATAAGAAATGAAGATAAGACTCAAAAAACTCGTACTAA
CATTACAAACAAACCTAAACAAAACAGAACAAACCAACCAGATAACATCC
CTCCTATTGTAACACTGCAAGGGTTAAGTTTGACATAAACCACGTCCTCA
AAATATTCTTAGTTTTTGGTCTTGGCTGTAATAATAAAGAAGGGAGTCGC
AGTGTTGTCGTGTTTTCAATTAGTTAGAGTTTTGTGTAAAGCGCAATGAT
AAGAACAGAGAAACGCCGGTAGCAACAGAAACAAAACAACGATAGCTTTA
AACAAAACAATAAGAAACAAACAAACTAACATAACAAACCAAACCAAAAC
AATGTAAAAACAACTAAACAAAACAGACACACACAATACACTGAGATTTC
TAAGAATTCGCTGAATCTAGAATTTTTCATTCACCAGTCGATCAAAAACG
AAGCAAAAACCCTGCGAAACTAAAGTTTTTCATACAAATATTAGCAAGGT
GATTTTCACAAATACGACCCCCAATAATAGAGCATTTACAGTATCTTCAT
TCTTTTACAAAAGCCACTGATGTCTATTTTATAACATTTTTCATTTTGTT
ACACTCCAGACACTCATGACATGTTACAATGGCTGATTCAAGACATGACA
TACTGTAACGACGATTAACGACTATCTGTACAGTTGCCAAGACAGACACC
ATAATACAGACAAAATACAAGCACTTTTGGGTAAGTAGTTGTTGATCCAT
CAAAGAGTTAGATTTTGAACAGTAATCGTCAGTCGTGCAAAATTACTCGA
ATCTAATTGGTTTAAAGAAGTGCGATTAATCGTTAATTGCACTATTACAC
TTACTATTACTTTTTACACTCTACGGCGGGGGGGGACGCTTCGTCCTAAC
GTCAAAATGTTTCCTTTTTTTCAATAAAAACTTATGATTTACTGACGATT
ACTAGTACTATTACAAAATCCAATTTATAACAAACAGAATGTCCAATGTC
ATCATTCATTACATTATCGAGCATTCTCAACAATATATTAGAAACAAATT
GATGTACCACACAATAAAGTATAATAAGCCAAAAGGGCTAGAATCGAATC
TCCTTGGTAGGATTTGAAGCCTACCAAATCCTACCAAAGTTGCGCGGCCT
AGCGCGGTCCACCTGGTTTTTACACAAAATGACAGATTGAAACTAAAATG
TGCACCTAAATTTCGAAAAAGATATCACTCGAAAACAAAGGAATGGCTAG
ATTCAATCTGTCGTCAAAAATACGGCGCATATTTAAAGGCTTCGCTTTTT
CTTGCCTGAGAAATATTAAAGAATCGATTCTAGCCATTCGGGCCTCTAAA
ATTTTTTTCTCAAATGGACAATTGACTGTTTTGAAGAAACTTTGCCGTGA
GCGAAATACCTCTCATATTCAATGTTGGGATATTTTTGTCCTTTTAAATA
CGAATAGAAAAATGTTCAAGTGCGGGATTTAAAACTGTCATTTTCGTATC
TTAACAGTGCAGACAGAAGAGAGACACGGATTCGTACATATGATTATTTA
AAACGTTTGACAAAATGTTTTAAAACTTTTTACAGTACACTGGTCTAATA
TCGACATCCCTCGTCTAATTTCGATTTCCTTCTTTGGAGCTTGGAATAAT
ATGAAGGTTAGAATCGTCGGTCGCTAATTGGAGGTCAGAGAGGAAAAAAT
CTGCTCTCAATCAGTGTTTCCCACCTACCTCATAGGCGGTTTTAGACCCT
GTCGAACTTATCGGGGGAGAGATTAGTAATTGTAATTTCATTGTCTTTTA
ACAAGCGGTGCACTCCTTCGCATGTTTCCGACGTACTTGCTCTATTGTCT
TAAATCCGCCAGTGTACCTTTTAATCATGTCTATAAGAAGGGTGTCGGAA
TTAGATGAGGGATGTCGACAGTAGACCAACTTACGGTATACAACAATTTT
CTATCTCTCTTTCTACAACAGACGATAGTGACGTCTTTGACAACAGCCCA
ACACTCGACCACAACACTTTAATGACAACAGTAGCTGACCAACATGTAAA
TAGTCTCAGTGCATCCCCTACCAACAACTTTATGGCTATGTCCGGTGTTA
CACATAACCGGCCACGGATACCGATCAAGAAACGGCGCTACCGGACCACA
TTCACCACGCATCAACTTGAAGAACTGGAAAGCATATTTAACAGGACGCA
CTACCCAGATGTCTTTCTAAGAGAAGAAATTGCGTTGAAATTGGGATTGA
CTGAGGCAAGAATTCAGGTACAACAATGTCAAAGTTATTTTTCTAATTCT
TTATCAATTTCATTGATGATTGAGAAATCTTCTAAAGTTTTTTATGGTAA
ACCAGTAGCAGGCTTCAGCACACCTTACGAAAATTAATATGACAGAATAA
GAATTGAATGTCTATTTGTATCCATCAACTGTAATAAAATACTAGTATAC
TATAAAAGAGTCAAACAAGCGCCCCGTACTGGGATCTATTTCAATATTTC
TTACTATTTAAAGGCCCAATTGTAACAAAGTTTTTGAAAAAATGAGAAAA
ACACACTCGGATATTCACCCAATAAAAAGGTGTCAAATTTCAGCCAAGTC
GGGCTATTTTTGAAGTCTCCAATCCAACCCACATATACAGACAGATTAAC
ATTCTCAAATTCTAACTCGGCTGAAGTTGAGAGCTAACAGAGCTAACTAC
TATCACTAACAAGGCAATGCAATATGTAAAAGCCTTTCAAACTCGGATGT
ATTTGCGTCAGAAAAAAATCTGAGTTCTATAGTACAGTAAGCACTTTTAC
ACCGACGAAAGCAAAATTTACGTCCGAATACCAACGCTAATCAGAATGGC
TGTACAGCCACCTATAAATTATGAAAAGGCAATCCATCCAATCCAAGCCA
ATCCATCAATGTAAGAAAGAAGAGGCTAACAATTGTATATTTTGAATATT
TAGGTATGGTTTCAAAACCGACGTGCAAAATGGCGGAAACGAAACAAAAC
CAACGTTAACCAACCACATCACATTCCTTTCGGTTCGTCCGCTACAAGTA
ACCAAATGAACCCATTGCAAAGTAATACAGCTATGCGACTGATGAATAGT
AAGTCAAATTACGGTGGAAACAATGCTCCAGCTTTAATGGGTTACCAACA
ATCACCCATGGTGTATAACAACATCTTGAAATCGTTATCTAATCAACCCA
GCCCAAAAATGATGAGCGAGAATAGAAATAACTCCAATAACCTGTTTTGG
TACAGGTGTGGAGCCAACGCCCAAGCACCTCAACGAAATTTTTTCCCCTG
CCCTACAGACTCAAGGNTGTGGAGCCAACGCCCAAGCACCTCAACGAAAT
TTTTTCCCCTGCTCTACAGACTCAAGAAATATATCACCAGGAAATAATAC
AAATTTCTATTTTGGTGAGAAAGTTGCAGATGAATCACAACCTAACTGGT
GGGATATGCAAAGTCAAACCGTATGAGTATCTGTGGCAGAGTTTTTCGAT
GGATTTTGAAGCACCGCAAGATTGCTTTGATGAACCATAGAGGTTACCTA
GGGATACTAAAACCTTTCAATGAGAGACAAAGATACTGGTGAACCCGTCA
ATAAGTGACGGGGCTTGTACTTTTTTGGATCACATAAGGTAGTGGAAGAA
AGACTGATAAAAACAGAAAACACTGGCATAACCTTCGGATGATAACAATA
AATTTATTCCTAATTTCACGGAATTATGTCAATTGACAAGAGTGGCCATG
TGCCGCCATGTGTTACAATTAATTATGGGATCTTAATGACATAGAAGGAG
AGCAATCCATTTTGTCTGTGGTATTTATTGACTGATATTGGAATAAATCT
ACATTTTAAGGCTTATACTCGAATTCTGCAATACAAGATTTGACGAGGGC
TTCAAGATGCCTGATAAAAAAGACGAATCCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007722-exon-sc0000079-1575043694:22346..22789 | TCONS_00007722-exon-sc0000079-1575043694:22346..22789 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1575043694:21398..21552 | TCONS_00007722-exon-sc0000079-1575043694:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1575043694:17023..17318 | TCONS_00007722-exon-sc0000079-1575043694:17023..17318 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1575043694:15356..16336 | TCONS_00007722-exon-sc0000079-1575043694:15356..16336 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1510915933:22346..22789 | TCONS_00007722-exon-sc0000079-1510915933:22346..22789 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1510915933:21398..21552 | TCONS_00007722-exon-sc0000079-1510915933:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1510915933:17023..17318 | TCONS_00007722-exon-sc0000079-1510915933:17023..17318 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1510915933:15356..16336 | TCONS_00007722-exon-sc0000079-1510915933:15356..16336 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1491911889:22346..22789 | TCONS_00007722-exon-sc0000079-1491911889:22346..22789 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1491911889:21398..21552 | TCONS_00007722-exon-sc0000079-1491911889:21398..21552 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1491911889:17023..17318 | TCONS_00007722-exon-sc0000079-1491911889:17023..17318 | Clytia hemisphaerica | exon |
| TCONS_00007722-exon-sc0000079-1491911889:15356..16336 | TCONS_00007722-exon-sc0000079-1491911889:15356..16336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:15356..22789 - |
Blast
BLAST of TCONS_00007722 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.356e-22 Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 2
Query: 779 FTTHQLEELESIFNRTHYPDVFLREEIALKLGLTEARIQVWFQNRRAKWRKRNKTNVN 952
FT++QLEELE F +THYPDVF REE+A++L LTEAR+QVWFQNRRAKWRKR K
Sbjct: 335 FTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQ 392
The following BLAST results are available for this feature:
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