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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007720 ID=TCONS_00007720|Name=TCONS_00007720|organism=Clytia hemisphaerica|type=transcript|length=8539bp protein sequence of TCONS_00007720-protein >TCONS_00007720-protein ID=TCONS_00007720-protein|Name=TCONS_00007720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1881bp MEFLSHKEHDVQQKTLQCLQTYKFPYLKPYHEDFEKLMDDTTFREELVKIRun BLAST on NCBI transcript from alignment at sc0000079:633908..699970+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007720 ID=TCONS_00007720|Name=TCONS_00007720|organism=Clytia hemisphaerica|type=transcript|length=66063bp|location=Sequence derived from alignment at sc0000079:633908..699970+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000079:633908..699970+ >TCONS_00007720 ID=TCONS_00007720|Name=TCONS_00007720|organism=Clytia hemisphaerica|type=CDS|length=146796bp|location=Sequence derived from alignment at sc0000079:633908..699970+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007720 vs. Swiss-Prot (Human)
Match: UTP20 (Small subunit processome component 20 homolog OS=Homo sapiens GN=UTP20 PE=1 SV=3) HSP 1 Score: 964.911 bits (2493), Expect = 0.000e+0 Identity = 634/1975 (32.10%), Postives = 1075/1975 (54.43%), Query Frame = 2
Query: 2711 PRDKETIKKHNKRKT-KTLCAQLDVYKQFKDPKSISKEKRLFQFYMEFLSHKEHDVQQKTLQCLQTYKFPYLKPYHEDFEKLMDDTTFREELVKIC-SVDEPVFKDDHKEHLMPIVIRLLYGKLQRXXXXXXXXXXXXXARRNIIMQFLAQCNNNEIKTFISLITDPLKLYKDIE----IISSVENQSLAISAIVPLQRQISFCNMFSTLVTRLQKQAMYYLPELFHLMLKIVWSNSWCLEHKKEEIWPHYLGRMKELRTLGIMKLIELFTTIPEFDCQ-ESIDEIFTSAVWPKLAQLPTESCQNSTPLFQLVECWSKNSRYFQLLSKENENG--LSLISQLFEVLRQNALTSDMEKKVMIIIQNLLKSEAFEESEEKGKLLTTG-------QSFKDEETIGIQIVKPYVANLLHHFYGKLHSKMSNVTLKTKQKIGNIIPHIQLSILADVSKFVTDADLCEKLIDIFLPVLH-CVASEEVQFNIVTTVQNLLPQTTPTERHLSLFPPLFSCFHGNKPRDMLCKVYIKMSESYPEIARIAKYVND---LNSWDAKRLEEPDYERRLAAYRGISDSFEKEAEKWSVDHILPILNNCFFFVDHSNDMSLRDASSSCIEAVFQMVSRKLKAEREAGQEGSGTKLFEDVFVKCILPSIMQGLKLKNSVPRHEHIHFLEVLIKTFDHRC-LSDLKELT-TDDPETDFFQNIKHVQMHRRIRAVHQLTSKCGEGK--LSNKSLYNYLLPMITHFIHDNLSKSKDHNLLTATIEGIGAIVNGFPWSKYANVLKHYLSLLQKERFNQKTYIRVVVVVLNNFPFDLSNVIIEEQILKKSDGKKDEKPGIKGSHEKPQEDNKDKDESKE--TENXXXXXXXXXXXXXXXXXXXXXXXXXISTRGEVKPRTKQVDQKSAEQICQALSTRILPQLHRFFTKKSRVESFHKKSNNHAEDGEDILKVPVAFAIVKLLQHLPKSTLMSNLSGILLRVSQSLKSQARDVRDIARDTLKKIAASLGSSYLSQXRDTLKKIASSLGSSYLSQVFSQMKSVLQRGYQLHVLGYTVHSILENMQNEMKGGDLDNCVALIMQIVCEELFGTVAEEKTIQGIVVKLFEAKSKKSNDLIEIVSTFITSGSFATLIGPLKEVLDTTQDHKTRRKVEEAFRRVSVGLLHNTGVSPEDHLLFIHGTISNTVSTLFEKRKNKKAAVNHINDADKMNHPSIVREDIYLMPDKPTRSGVAPSVSKFTNEHVLIEFGLQQLHTGLKRSKFTATNDEHCRMLDPFIEILVNSLTSKHTRLVTLTMRCVALLVKFSLPALKESMPEITKQIFKLIKKYARAGSAKGDNFEMIMTSFKTMTIIIRDGKEHKVSTKQLQILMTYVEEDIYDSSRQATALPLLKAILMRRLASKEITDTMEKIEELSIRDDDNSIRAQCRQLMMTYLIEYPLGKKMSKHFDFYISNLSYEEETGRISSLEMFAVMFNKFPYTVLQEYSTYFFIPLVMMLINDESALCKKMAASAVKLLINKLGVGSPRNDLFDITLNWSKQNKVQLRQVAMQLFGTFIDVEQDTSNNDNFKTRLDQMVPVLLKTIQDGVKADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDGAVQIKKLPMNDKCLYNTLTCVGKIFTKIPGIFTTGADYKINEFLAAITELLLHSHAWVRLSSSQLFAVYFSSIPVEEIA---NTSSN----------SYLSIDTQAKVKDLCLIFYEQLKDDQLTKEIADQATKNLIYLFKIVKY---------------LNEGEPNSKAVSNNNAIGDTDILHDDEEIQNPKKNITIKVLIVKMTRLATFEALKKIKESVKRTCVFRWIGAVCLDSXXXXXXXXXXXXXKPLYREISNAQKEESDLVK-LAHEVLELIRGQFDKQTFAEVYAKVQKMAHEKRDSRKRKLAVEAVKEPEKFAARKQKLNLAKREQKKRKLYERKPELKFKKIRSQ 8470
P+D+ + KK +R K L A L V+ +F +P+++ E +L++ Y++ L H++ VQ+ TL C+ TYK P++ PY E+ ++L++D +F+EE+V S D V K H+ L PI++R+LYG+++ K+G GKS+ R I+++FLA EI+ F+ L+ +P++ +K+ E +I +VE+ L +S ++PL RQ N ++ + YLP++ ++L + + S L+ ++E+I ++ +K LR LGI + ++F + + E ID +F AVWP++++L +ES + TPL +L+ WS+N+RYF LL+K+ +++ +F +L L+ VM I+ +LL FE +E LL TG ++ + TIG +++ P+V +L + SK + K K+K +L IL+ +SKF+ D + LI + LP LH +E+ + +I+ TVQNLL L LFS R +LC V+ E+ + KY+ D LN++D + L++ +++ R ++ I+ S+ KE + V++++P+++NCF+ ++ DMSL D +S C+ ++ + ++ E++ + ++ + +L + +GLK + + ++ L LI+TF ++ DL +LT DPE DFF+N+KH+Q+HRR RA+ +L + EGK LS+KSL NY++P I D K N+ TA E IGAI WS Y LKH++ +LQ + NQK + ++V+VL F FD + +EEQ + K + +++ I+ + E + +E KE ++ ++ + + + I+ P+ K+ +++ + I ++ ILP+LH+ ++ E HK + + E++++VP+AFA+VKL+Q LP+ + +NL ILL+V LK++A+++RDIAR TL KI LG +L V ++++ L RGYQ+HVL +TVH +L+ + N+++ GDLD+C+ ++++I ELFG VAEEK ++ I+ K+ EA+ KS D EI+ F+ LI PLKE+L T K RKV E RR++VGL+ N ++ E LL +G IS + L EK KN A P + + L+P P R G VS+ TN H+ IE GL+ LH LK SK ++ + MLDPF+ +L++ L S +++T ++C+ +++F LP+++ ++TK +F L+K YA+ G+A+G NF +++ FK +TI+++ K ++++ KQLQ+L+ Y EEDIYD+SRQATA LLKAIL R+L EI + M K+ +L++ R QCRQ+ + Y+++YPLG K+ + +F ++ L+YE ETGR S+LEM A +F+ FP +L E FFIPL +M IND+SA CKKMA+ +K L+ K+ + ++ LFD+ W K RQ+A + G F++ S +F+ RL ++PV+ K I D ++ + D+ L++ LT + K+ + I T +++ + + L H H WV L+++Q+F + F+S EE+ NT +L+ D K+K + L QL L + + +Q KNL++ K++ L E E V+ + ++D +E + + T+ LI K++R+A EA + +KRTC+F+++GAV +D ++ P+LP ++ PL+RE+++ E+ L+K L+ E++EL++ ++F+ +A VQK A+EKR RK++ A+E V P+ A +K K + K E KKRK+ +P K K+ +S
Sbjct: 897 PQDESSQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQMVQKITLDCIMTYKHPHVLPYRENLQRLLEDRSFKEEIVHFSISEDNAVVKTAHRADLFPILMRILYGRMKNKTGSKTQGKSASGTRMAIVLRFLAGTQPEEIQIFLDLLFEPVRHFKNGECHSAVIQAVED--LDLSKVLPLGRQHGILNSLEIVLKNISHLISAYLPKILQILLCMTATVSHILD-QREKIQLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDAVFHGAVWPQISRLGSESQYSPTPLLKLISIWSRNARYFPLLAKQKPGHPECDILTNVFAILSAKNLSDATASIVMDIVDDLLNLPDFEPTETVLNLLVTGCVYPGIAENIGESITIGGRLILPHVPAILQYL-----SKTTISAEKVKKKKNRAQVSKELGILSKISKFMKDKEQSSVLITLLLPFLHRGNIAEDTEVDILVTVQNLLKHCVDPTSFLKPIAKLFSVIKNKLSRKLLCTVF----ETLSDFESGLKYITDVVKLNAFDQRHLDDINFDVRFETFQTIT-SYIKEMQIVDVNYLIPVMHNCFYNLE-LGDMSLSDNASMCLMSIIKKLAALNVTEKD----------YREIIHRSLLEKLRKGLKSQTESIQQDYTTILSCLIQTFPNQLEFKDLVQLTHYHDPEMDFFENMKHIQIHRRARALKKLAKQLMEGKVVLSSKSLQNYIMPYAMTPIFDE-KMLKHENITTAATEIIGAICKHLSWSAYMYYLKHFIHVLQTGQINQKLGVSLLVIVLEAFHFD--HKTLEEQ-MGKIENEENAIEAIELPEPEAMELERVDEEEKEYTCKSLSDNGQPGTPDPADSGGTSAKESECITKPVSFLPQNKEEIERTIKNIQGTITGDILPRLHKCLASTTKREEEHKLVKSKVVNDEEVVRVPLAFAMVKLMQSLPQEVMEANLPSILLKVCALLKNRAQEIRDIARSTLAKII-------------------EDLGVHFLLYVLKELQTTLVRGYQVHVLTFTVHMLLQGLTNKLQVGDLDSCLDIMIEIFNHELFGAVAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGKDQVTKLILPLKEILQNTTSLKLARKVHETLRRITVGLIVNQEMTAESILLLSYGLISENLPLLTEKEKNPVAPAPD---------PRLPPQSCLLLPPTPVRGGQKAVVSRKTNMHIFIESGLRLLHLSLKTSKIKSSGECVLEMLDPFVSLLIDCLGSMDVKVITGALQCLIWVLRFPLPSIETKAEQLTKHLFLLLKDYAKLGAARGQNFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEEDIYDTSRQATAFGLLKAILSRKLLVPEIDEVMRKVSKLAVSAQSEPARVQCRQVFLKYILDYPLGDKLRPNLEFMLAQLNYEHETGRESTLEMIAYLFDTFPQGLLHENCGMFFIPLCLMTINDDSATCKKMASMTIKSLLGKISL-EKKDWLFDMVTTWFGAKKRLNRQLAALICGLFVE-----SEGVDFEKRLGTVLPVIEKEIDPENFKDIMEETEEKAA---------------------------------DRLLFSFLTLITKLIKECNIIQFTKPAETLSKIWSHVHSHLRHPHNWVWLTAAQIFGLLFASCQPEELIQKWNTKKTKKHLPEPVAIKFLASDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFAAKVLYLLELYCEDKQSKIKEDLEEQEALEDGVACADEKAESDGEEKEEVKEELGRPATLLWLIQKLSRIAKLEAAYSPRNPLKRTCIFKFLGAVAMDLGIDKVKPYLPMIIAPLFRELNSTYSEQDPLLKNLSQEIIELLKKLVGLESFSLAFASVQKQANEKRALRKKRKALEFVTNPDIAAKKKMKKHKNKSEAKKRKIEFLRPGYKAKRQKSH 2776 HSP 2 Score: 111.309 bits (277), Expect = 0.000e+0 Identity = 100/359 (27.86%), Postives = 171/359 (47.63%), Query Frame = 1
Query: 1636 WCSSVVLMHTRFEPTKKDLCDISELAKEILDKLDE-SLSTHHLLALCYLVACFQLMKAKSEAVCEDLPLKKMTELVRLHPSSEHCLQAFDVY---VXXXXXXXXXXXXXIMNI---LKENLNSPFKLNRILTLRIFD--SLQAKSTIESD-------VFKNCLVAEEIEVTLNTYRDRMMHLQKLTFRQD---TTLPPDQIMECVLRYLIGNFYLNFSLVWEPTTKVILSYMGEEHDKTNYLWTVWMEILNNITGFCENPKPPFTKDDE-------ERNLSETYLTFYNVFRIEKT--EYRPDYQNFRYLMWKAMSDFASVVERRSRFVMPLFFQFVENEYTQADELYSRTQNVSKEKQ 2628
W + VVL H R +K + ++ + + +D+ S +L LC V ++ SE + +P++++ LV P L D+Y ++ +M + L+ N+++ R+LT+RI + +Q ++E D VF AE + T+N YR++++HL+KL R D T +P + E LRYL+G Y+NFS +W+P ++I S+ E +K W V+ E L E D++ E+ Y+ KT + R D+ NFR+L+W+A++ F VE RSR + PLF +F+ NEY AD + TQ++ ++ +
Sbjct: 519 WAALVVLPHIRPLEKEKVIPLVTGFIEALFMTVDKGSFGKGNLFVLCQAVNTLLSLEESSELL-HLVPVERVKNLVLTFPLEPSVLLLTDLYYQRLALCGCKGPLSQEALMELFPKLQANISTGVSKIRLLTIRILNHFDVQLPESMEDDGLSERQSVFAILRQAELVPATVNDYREKLLHLRKL--RHDVVQTAVPDGPLQEVPLRYLLGMLYINFSALWDPVIELISSHAHEMENKQ--FWKVYYEHLEKAATHAEKELQNDMTDEKSVGDESWEQTQEGDVGALYHEQLALKTDCQERLDHTNFRFLLWRALTKFPERVEPRSRELSPLFLRFINNEYYPADLQVAPTQDLRRKGK 872 HSP 3 Score: 139.043 bits (349), Expect = 2.643e-32 Identity = 80/200 (40.00%), Postives = 133/200 (66.50%), Query Frame = 3
Query: 117 KGDNTFRFQSFSEQISNVSIDV-HRNARLTSKEIPENDKDTFFRESLEKWAELNCSIDYTKLYRKLKPLSRSFNQLVYHKDQVVEILKEYLSKDESXXXXXXXXXXXXMSKDLLDEFYPFFDQFFPLLVKFLGNNQNTKLIESTFICFAYIFKFLWKWMLKDLKNFFKTFSLLVSASQKHHIQVFASEAFAFLIRKSKDK 713
K +NT+RF +F+E++ NV+ID+ HR R S E + +T+F E L KW ELN + + K Y+++ +SFNQLVYH++++V+ LK +L S A++ L+L+ +++DL +FYP F +FF L + + Q+T+L+E F +Y++K+LW+ M+KD+ + + +S L+ A +K HI+ FA+E+F FL+RK DK
Sbjct: 9 KTENTYRFLTFAERLGNVNIDIIHRIDRTASYE---EEVETYFFEGLLKWRELNLTEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQVKNSFAYQPLLDLVVQLARDLQMDFYPHFPEFF-LTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSSIYSMYSTLL-AHKKLHIRNFAAESFTFLMRKVSDK 203 The following BLAST results are available for this feature:
BLAST of TCONS_00007720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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