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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007719 ID=TCONS_00007719|Name=TCONS_00007719|organism=Clytia hemisphaerica|type=transcript|length=1634bpRun BLAST on NCBI protein sequence of TCONS_00007719-protein >TCONS_00007719-protein ID=TCONS_00007719-protein|Name=TCONS_00007719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MASNGDDTRYAFIAEWYDSHAAINRRYQFLFYAKDSTIEMFDIKNRRVFLRun BLAST on NCBI transcript from alignment at sc0000079:514884..607204+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007719 ID=TCONS_00007719|Name=TCONS_00007719|organism=Clytia hemisphaerica|type=transcript|length=92321bp|location=Sequence derived from alignment at sc0000079:514884..607204+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000079:514884..607204+ >TCONS_00007719 ID=TCONS_00007719|Name=TCONS_00007719|organism=Clytia hemisphaerica|type=CDS|length=14742bp|location=Sequence derived from alignment at sc0000079:514884..607204+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007719 vs. Swiss-Prot (Human)
Match: NDK7 (Nucleoside diphosphate kinase 7 OS=Homo sapiens GN=NME7 PE=1 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 9.583e-140 Identity = 188/372 (50.54%), Postives = 266/372 (71.51%), Query Frame = 1
Query: 196 RYAFIAEWYDSHAAINRRYQFLFYAKDSTIEMFDIKNRRVFLKRSKYENISLKDVYIGAIINVHARQLKIADYADKFTRNKLETATAKTYAMIKPDAVKHTGQILERIQQEDFVINQIKKVNVPRSFAMKFYAEHEGKPFFEKLMSFVTSGPVVAMELVGVDCVKRWRQLIGPTNTQKAKEEAPNSLRALFGTDATRNACHGSDSDESAERELNLFF---GPSSPNVSATFRDCTLAIIKPHAVNAGQIGPIMTAIEKEGFNISTFKMFRLEKTNTEEFYEIYKGVVNEYSAMVEELCNGACVAMEITKGDDVATTFRDFVGPSDPEIARYLRSHTLRAKFGVDKIKNSIHCTDLPDDALLEVEYFFQILSS 1302
R+ FIAEWYD +A++ RRY+ LFY D ++EM D+KN R FLKR+KY+N+ L+D++IG +NV +RQL + DY D++T +L + KT A+IKPDA+ G+I+E I + F I ++K + + R A+ F+ +H+ +PFF +L+ F+T+GP++AME++ D + W++L+GP N+ A+ +A S+RALFGTD RNA HG DS SA RE+ LFF G P +A F +CT I+KPHAV+ G +G I+ AI GF IS +MF +++ N EEFYE+YKGVV EY MV E+ +G CVAMEI + ++ TFR+F GP+DPEIAR+LR TLRA FG KI+N++HCTDLP+D LLEV+YFF+IL +
Sbjct: 6 RFVFIAEWYDPNASLLRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYDNLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVTEMYSGPCVAMEIQQ-NNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLEVQYFFKILDN 376 The following BLAST results are available for this feature:
BLAST of TCONS_00007719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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