|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007714 ID=TCONS_00007714|Name=TCONS_00007714|organism=Clytia hemisphaerica|type=transcript|length=1071bp
GTTCCAACAATGTCCTAATTTTCTCGACACTGCAAACATAGCCAGCTCAT
ATTCGGGGCTATAAATTAAGGGACCAAAACATCACCAAGTCACTTTAGTT
TGCTGGTCTACACTTGAACAATTTTGATACAGTGATCTATACTACAAAAA
TgaattattttcttgttttcattttacttGCTGTCaccatgatgacgtca
tcggttttcGGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCAT
GTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGACAATCAAC
TGTGGTGCGGAGGCCGTTCAACACAAAGGAGAAACAAGGGTCGATGTGGC
GTCTGTGGAGATCCTTTCGATGCAAAAATTCAACGTCACATGGACGGAGG
TCGTTTTGGAAACAGGATCATTGGCAAAACCTACAAAAGTGGAGAAGCTA
TTAAAATCAACGTCTTGTTGACTGCAAGCCATTTGGGATACTTCGAATTC
CGTATCGGAGATTTCAGCAACAGTGATACTTCTGGTGACAAAGAAGGAAA
GTTGAAAGGAGTTCTCTTGAAACAGGTTAGTGGATCAACGAAATATCACA
TTCGCTCAGCTGGCGCAAGATCTCACACAATCCACTTGCAATTACCTACC
AACTTAACCTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAA
CTCTTGGGGATGTGATGCTGAAGGCTGTGGTTTGGGCCATGGATTTCAAG
AAACGTTCGTCAACTGTGCTGATGTTCGCGTTGAATGAGAAGCCGTTCAT
TCGGTCGTCAAAATTTTCGTTTGTTATTGTGATAATTTTGGTgatagttt
tcaaaataaaacatcaaCACATAATTCTTtaagaaaaagtgaatatctTG
AATATATTGAATGCTATGGTGTATTGCTTttccattttcaaatatttggg
gGATCGTTAAAAGATTTCAGATAGGCCAGCGGCCcaggtagtgaattgtg
tcacttcgatgtctagatctcgagatattttggtgtagatgttgaaaatt
atcgatatatTTTGCGAATGA Run BLAST on NCBI protein sequence of TCONS_00007714-protein >TCONS_00007714-protein ID=TCONS_00007714-protein|Name=TCONS_00007714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MNYFLVFILLAVTMMTSSVFGHGYMRSPPARNSMWRFGFRQNGANYNDNQ
LWCGGRSTQRRNKGRCGVCGDPFDAKIQRHMDGGRFGNRIIGKTYKSGEA
IKINVLLTASHLGYFEFRIGDFSNSDTSGDKEGKLKGVLLKQVSGSTKYH
IRSAGARSHTIHLQLPTNLTCERCVIQWWYKTGNSWGCDAEGCGLGHGFQ
ETFVNCADVRVE Run BLAST on NCBI transcript from alignment at sc0000079:342847..345934+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007714 ID=TCONS_00007714|Name=TCONS_00007714|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at sc0000079:342847..345934+ (Clytia hemisphaerica)
GTTCCAACAATGTCCTAATTTTCTCGACACTGCAAACATAGCCAGCTCAT
ATTCGGGGCTATAAATTAAGGGACCAAAACATCACCAAGTCACTTTAGTT
TGCTGGTCTACACTTGAACAATTTTGATACAGTGATCTATACTACAAAAA
TgaattattttcttgttttcattttacttGCTGTCaccatgatgacgtca
tcggttttcGGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCAT
GTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGACAATCAAC
TGTGGTGCGGAGGTATCCCTTTTGAATGAATTCCATCGTTATGCAATTTT
TTAGATATATTGGGGTAATCTTACCCCTAGCGCACCCAAGCTGGGTTTCA
AAATACCTTTATAAGTGCATCAATGATAATCGGTCCCAATGGTCTAAaag
agtttttcatttttccaggcgGTTTTTTTTCAGCGGTTAAAAGATTTTAG
TTCAACCAccgtcactttaaggtatgaaaataaatttcctaAGTTTTTTT
TAGCAAATTTGTCATAGggggaaatttaatggaatggTCCAATGGTGTAA
ACGCCTAAAAGTAAAGTACTGACCATTTGGTGACCCTTACTGTACTGATA
TTGTCAAACCAAGAAAACGATTTTTGTaagctttgtttttctttttcaat
gttATTAGGGTTTCAAATCCTCCTCCACTCTAGGGTTGTTTCTCGATTCG
ATTGATGACATTAATTTCACTCCGAACAAAATTTTTCAGGCCGTTCAACA
CAAAGGAGAAACAAGGGTCGATGTGGCGTCTGTGGAGATCCTTTCGATGC
AAAAATTCAACGTCACATGTAAACACCGTTTATCTTATGTTTTGTTATAT
CTTACTCCTTTTGATTGTATGAAGAAACACAGGGAATTCTTTTTCTANGT
GTTACATCTTACTCCTTTTGATTGTCTGAAGAAACTATTCTAATCTAACT
AACTCTATTCTAATCATATTTTAGGAAACTTTAAATTACAttagggaact
tattttggcgaatttggcgagtTTAGAGTTTGGATATTCGCCAAATATTT
tactcactcgccaaaataagttcccttcaaaattaaattattttgcattt
gccaaattgacacctaaattaCTCAAGATAACGCAAATTAAAAAGtagta
aatttttcaaaattatatcgGTTACATGCATTCTTCAAAATAAGGTCCCC
TGATTTAATGCTAGGTGGCTTTAGGAATACCATAACATAAATCGCAAAAT
TGAGTTCTACATTAAAAGAAAGAAGGAGTTTTAAATCGTCAATTCCCGAC
ATTTACATTTTTCAGGGACGGAGGTCGTTTTGGAAACAGGATCATTGGCA
AAACCTACAAAAGTGGAGAAGCTATTAAAATCAACGTCTTGTTGACTGCA
AGCCATTTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCAACAGTGA
TACTTCTGGTGACAAAGAAGGAAAGTTGAAAGGAGTTCTCTTGAAACAGG
TGAACATGATTGGCCACAGTCTTTGAATAGATcgtatcggagtttttgat
tttcctaaaaaagtgATACATTGAGGGATtgttacaatagaattccatcg
aggaattcctagagagatttctattgtaatactccggAAACAATCCAaaa
atgcatcgcttttttagaaaaatcaaaaactccgaaaATATCGATCGTCT
TccaacattacatcacggacccaatagctgattggtttaAAGTGACGTAT
GGAATGATTTTACATCTTTTACAACCAATAGACTATTTGATgtatgatgt
aatgttagaagagATTGCATTGGTGAATTTTATGATTCCACACCAATTGG
TGCTTTTAACCAAAGGctgcttgtctttattgaaaggGCGGCTTCGGTAC
CACCCGTTTTcgaaatcaaatttaatttacttttatctttcaatcttttt
ctcaAATGTCTTAAACACGGCTTGTCTGGTTTCTTGAGAGAATCTTTACT
GGAATTCGATTACTGACTCTCTATTGTTCAAGTTAAAGATAATATTGGTA
ATAACCTCCAAAGAGGCTCTggatttgaaactttttggaagGAAGTTAAG
CCACTTACTTTAGGCAACAAAACTTTCGCGTGGCCGAAAAATTGCTAAAT
TTACGACATATACTTTCGCGAATTGgaggaaataattttttccacGAGCA
TAGACTTTTGCGAATCGTTTgatgaaaatgagatttttcgaatgaaaatt
gccatcaaagtgaaaaatattgctTAAATCCGATAAAGACGGTTGCActt
cgactttaaaaaggcactaaaggatagaaaatgtcaaaaatttgataACT
ATTACAATTTCGTGGTTGtatagatttccaattttttttgagaatttttt
tcacgaGCAATAATtcttcgcgaaagtttctgctcgcgaaagtttgtacg
cctaattgccgggggattggaaattgtacttttaACAAGctggggccgtt
tatttggaacctaagagtaactgTGATCGTTTCATCATACAGGTTAGTGG
ATCAACGAAATATCACATTCGCTCAGCTGGCGCAAGATCTCACACAATCC
ACTTGCAATTACCTACCAACTTAACCTGTGAACGTTGTGTGATTCAATGG
TGGTACAAAACTGGCAACTCTTGGGGATGTGATGCTGAAGGCTGTGGTTT
GGGCCATGGATTTCAAGAAACGTTCGTCAACTGTGCTGATGTTCGCGTTG
AATGAGAAGCCGTTCATTCGGTCGTCAAAATTTTCGTTTGTTATTGTGAT
AATTTTGGTgatagttttcaaaataaaacatcaaCACATAATTCTTtaag
aaaaagtgaatatctTGAATATATTGAATGCTATGGTGTATTGCTTttcc
attttcaaatatttggggGATCGTTAAAAGATTTCAGATAGGCCAGCGGC
Ccaggtagtgaattgtgtcacttcgatgtctagatctcgagatattttgg
tgtagatgttgaaaattatcgatatatTTTGCGAATGA Coding sequence (CDS) from alignment at sc0000079:342847..345934+ >TCONS_00007714 ID=TCONS_00007714|Name=TCONS_00007714|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000079:342847..345934+ (Clytia hemisphaerica)
ATgaattattttcttgttttcattttacttGCTGTCaccatgatgacgtc
atcggttttcGGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCA
TGTGGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGACAATCAA
CTGTGGTGCGGAGGCCGTTCAACACAAAGGAGAAACAAGGGTCGATGTGG
CGTCTGTGGAGATCCTTTCGATGCAAAAATTCAACGTCACATGGACGGAG
GTCGTTTTGGAAACAGGATCATTGGCAAAACCTACAAAAGTGGAGAAGCT
ATTAAAATCAACGTCTTGTTGACTGCAAGCCATTTGGGATACTTCGAATT
CCGTATCGGAGATTTCAGCAACAGTGATACTTCTGGTGACAAAGAAGGAA
AGTTGAAAGGAGTTCTCTTGAAACAGGTTAGTGGATCAACGAAATATCAC
ATTCGCTCAGCTGGCGCAAGATCTCACACAATCCACTTGCAATTACCTAC
CAACTTAACCTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCA
ACTCTTGGGGATGTGATGCTGAAGGCTGTGGTTTGGGCCATGGATTTCAA
GAAACGTTCGTCAACTGTGCTGATGTTCGCGTTGAATGAATgaattattt
tcttgttttcattttacttGCTGTCaccatgatgacgtcatcggttttcG
GTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCATGTGGAGATTC
GGCTTCCGGCAAAATGGAGCAAATTATAATGACAATCAACTGTGGTGCGG
AGGCCGTTCAACACAAAGGAGAAACAAGGGTCGATGTGGCGTCTGTGGAG
ATCCTTTCGATGCAAAAATTCAACGTCACATGGACGGAGGTCGTTTTGGA
AACAGGATCATTGGCAAAACCTACAAAAGTGGAGAAGCTATTAAAATCAA
CGTCTTGTTGACTGCAAGCCATTTGGGATACTTCGAATTCCGTATCGGAG
ATTTCAGCAACAGTGATACTTCTGGTGACAAAGAAGGAAAGTTGAAAGGA
GTTCTCTTGAAACAGGTTAGTGGATCAACGAAATATCACATTCGCTCAGC
TGGCGCAAGATCTCACACAATCCACTTGCAATTACCTACCAACTTAACCT
GTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAACTCTTGGGGA
TGTGATGCTGAAGGCTGTGGTTTGGGCCATGGATTTCAAGAAACGTTCGT
CAACTGTGCTGATGTTCGCGTTGAATGAATgaattattttcttgttttca
ttttacttGCTGTCaccatgatgacgtcatcggttttcGGTCACGGTTAC
ATGAGAAGTCCACCAGCCAGAAACAGCATGTGGAGATTCGGCTTCCGGCA
AAATGGAGCAAATTATAATGACAATCAACTGTGGTGCGGAGGCCGTTCAA
CACAAAGGAGAAACAAGGGTCGATGTGGCGTCTGTGGAGATCCTTTCGAT
GCAAAAATTCAACGTCACATGGACGGAGGTCGTTTTGGAAACAGGATCAT
TGGCAAAACCTACAAAAGTGGAGAAGCTATTAAAATCAACGTCTTGTTGA
CTGCAAGCCATTTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCAAC
AGTGATACTTCTGGTGACAAAGAAGGAAAGTTGAAAGGAGTTCTCTTGAA
ACAGGTTAGTGGATCAACGAAATATCACATTCGCTCAGCTGGCGCAAGAT
CTCACACAATCCACTTGCAATTACCTACCAACTTAACCTGTGAACGTTGT
GTGATTCAATGGTGGTACAAAACTGGCAACTCTTGGGGATGTGATGCTGA
AGGCTGTGGTTTGGGCCATGGATTTCAAGAAACGTTCGTCAACTGTGCTG
ATGTTCGCGTTGAATGAATgaattattttcttgttttcattttacttGCT
GTCaccatgatgacgtcatcggttttcGGTCACGGTTACATGAGAAGTCC
ACCAGCCAGAAACAGCATGTGGAGATTCGGCTTCCGGCAAAATGGAGCAA
ATTATAATGACAATCAACTGTGGTGCGGAGGCCGTTCAACACAAAGGAGA
AACAAGGGTCGATGTGGCGTCTGTGGAGATCCTTTCGATGCAAAAATTCA
ACGTCACATGGACGGAGGTCGTTTTGGAAACAGGATCATTGGCAAAACCT
ACAAAAGTGGAGAAGCTATTAAAATCAACGTCTTGTTGACTGCAAGCCAT
TTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCAACAGTGATACTTC
TGGTGACAAAGAAGGAAAGTTGAAAGGAGTTCTCTTGAAACAGGTTAGTG
GATCAACGAAATATCACATTCGCTCAGCTGGCGCAAGATCTCACACAATC
CACTTGCAATTACCTACCAACTTAACCTGTGAACGTTGTGTGATTCAATG
GTGGTACAAAACTGGCAACTCTTGGGGATGTGATGCTGAAGGCTGTGGTT
TGGGCCATGGATTTCAAGAAACGTTCGTCAACTGTGCTGATGTTCGCGTT
GAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007714-exon-sc0000079-1491911889:342847..343158 | TCONS_00007714-exon-sc0000079-1491911889:342847..343158 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1510915933:342847..343158 | TCONS_00007714-exon-sc0000079-1510915933:342847..343158 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1575043694:342847..343158 | TCONS_00007714-exon-sc0000079-1575043694:342847..343158 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1491911889:343636..343714 | TCONS_00007714-exon-sc0000079-1491911889:343636..343714 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1510915933:343636..343714 | TCONS_00007714-exon-sc0000079-1510915933:343636..343714 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1575043694:343636..343714 | TCONS_00007714-exon-sc0000079-1575043694:343636..343714 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1491911889:344212..344395 | TCONS_00007714-exon-sc0000079-1491911889:344212..344395 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1510915933:344212..344395 | TCONS_00007714-exon-sc0000079-1510915933:344212..344395 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1575043694:344212..344395 | TCONS_00007714-exon-sc0000079-1575043694:344212..344395 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1491911889:345439..345934 | TCONS_00007714-exon-sc0000079-1491911889:345439..345934 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1510915933:345439..345934 | TCONS_00007714-exon-sc0000079-1510915933:345439..345934 | Clytia hemisphaerica | exon |
| TCONS_00007714-exon-sc0000079-1575043694:345439..345934 | TCONS_00007714-exon-sc0000079-1575043694:345439..345934 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:342847..345934 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004302 | Cellulose/chitin-bd_N |
Blast
The following BLAST results are available for this feature:
|
