TCONS_00007713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007713
Unique NameTCONS_00007713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007713 ID=TCONS_00007713|Name=TCONS_00007713|organism=Clytia hemisphaerica|type=transcript|length=280bp
ggGTGATCTTGGCTGGATGACAAGAGGGTCTAAGGTTGGGCCATTCCAAG
ACGCGGCTTTCGCTTTGACCCCGAGTACAGTTGACAAGCCGGTGTATACC
GACCCTCCAGTGAAAACCAAGTTCGGCTATCACATTATGATGATTGAGGG
GAAAGAAATGATATGTTTTGGCGGTCACCCAGGAGAAACAATTCGTGGAT
AGAAAACAAGCacactttataattttttacattATCTGGTTTGTATTCTC
CATTTCGACGCATATATTGTCTTGAGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000079:342181..342608+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007713 ID=TCONS_00007713|Name=TCONS_00007713|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000079:342181..342608+ (Clytia hemisphaerica)
ggGTGATCTTGGCTGGATGACAAGAGGGTCTAAGGTACGTAAAATCTTTT
GATCGTTTCTATATGAAGTATTTTCAACTAAAGTTTTGGTCTAGAGCGAT
GCTTGAAAATTTTATCCCACTTGATGTCTGGCATTTAAGTCAATTTTGTT
TCTGTAACCCATTGAAATGATTTGTTCTTTAGGTTGGGCCATTCCAAGAC
GCGGCTTTCGCTTTGACCCCGAGTACAGTTGACAAGCCGGTGTATACCGA
CCCTCCAGTGAAAACCAAGTTCGGCTATCACATTATGATGATTGAGGGGA
AAGAAATGATATGTTTTGGCGGTCACCCAGGAGAAACAATTCGTGGATAG
AAAACAAGCacactttataattttttacattATCTGGTTTGTATTCTCCA
TTTCGACGCATATATTGTCTTGAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004373XLOC_004373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007713-exon-sc0000079-1491911889:342181..342214TCONS_00007713-exon-sc0000079-1491911889:342181..342214Clytia hemisphaericaexon
TCONS_00007713-exon-sc0000079-1510915933:342181..342214TCONS_00007713-exon-sc0000079-1510915933:342181..342214Clytia hemisphaericaexon
TCONS_00007713-exon-sc0000079-1575043694:342181..342214TCONS_00007713-exon-sc0000079-1575043694:342181..342214Clytia hemisphaericaexon
TCONS_00007713-exon-sc0000079-1491911889:342363..342608TCONS_00007713-exon-sc0000079-1491911889:342363..342608Clytia hemisphaericaexon
TCONS_00007713-exon-sc0000079-1510915933:342363..342608TCONS_00007713-exon-sc0000079-1510915933:342363..342608Clytia hemisphaericaexon
TCONS_00007713-exon-sc0000079-1575043694:342363..342608TCONS_00007713-exon-sc0000079-1575043694:342363..342608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:342181..342608 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.5642	53.8943	53.6101	75.1909	26.0007	23.7071	27.3304	17.851	14.733	13.8408	23.7684	17.7824	18.0629	14.7469	29.7542	33.329	20.3002	24.983	5.93905	7.69895	14.0701	20.7231	40.9889	31.9687	14.3311	14.2113	19.1455	13.7344	35.0999	26.337
Blast
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BLAST of TCONS_00007713 vs. Swiss-Prot (Human)
Match: PIN4 (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.791e-24
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:    2 GDLGWMTRGSKVGPFQDAAFALTPSTVDKPVYTDPPVKTKFGYHIMMIEGKE 157
            GDLGWMTRGS VGPFQ+AAFAL  S +DKPV+TDPPVKTKFGYHI+M+EG++
Sbjct:   80 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131
The following BLAST results are available for this feature:
BLAST of TCONS_00007713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIN41.791e-2478.85Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
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