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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007712 ID=TCONS_00007712|Name=TCONS_00007712|organism=Clytia hemisphaerica|type=transcript|length=2954bpRun BLAST on NCBI protein sequence of TCONS_00007712-protein >TCONS_00007712-protein ID=TCONS_00007712-protein|Name=TCONS_00007712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp NRIIITIKSNQITKMVHRKLQRIMKWRKVIVLFIAIFILYTIKSNMAEKTRun BLAST on NCBI transcript from alignment at sc0000079:305428..329808+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007712 ID=TCONS_00007712|Name=TCONS_00007712|organism=Clytia hemisphaerica|type=transcript|length=24381bp|location=Sequence derived from alignment at sc0000079:305428..329808+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000079:305428..329808+ >TCONS_00007712 ID=TCONS_00007712|Name=TCONS_00007712|organism=Clytia hemisphaerica|type=CDS|length=35154bp|location=Sequence derived from alignment at sc0000079:305428..329808+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007712 vs. Swiss-Prot (Human)
Match: GLBL2 (Beta-galactosidase-1-like protein 2 OS=Homo sapiens GN=GLB1L2 PE=2 SV=1) HSP 1 Score: 405.986 bits (1042), Expect = 3.789e-128 Identity = 237/602 (39.37%), Postives = 332/602 (55.15%), Query Frame = 3
Query: 168 LKIKGKDFVLEGKPFQILCGAIHYFRITPDSWDNRIKKAKGMGLNSVDIYIPWNLHEPQPGKFSTTYIKQLRMFMDLLKSNDMYAVMRPGPYICSEWDLGGLPSWLLSDDSMKIRSLYSGFTKAVTRYFNHLLPILEPYQHSKGGPIIAFQVENEYGSFGTDGKYMDFIQNEFRRHGLHELHFICDNMEGIGNYEMKEQVFQTINFMTKAEEAVGK--LLEMQPNKPVFVTEFWDGWFTHWGEQYHYVGAERLTKTLDYLLKNGYSVNFYMFHGGTNFGFYNGANANDDGSNYQCDITSYDYDAPVSEGGDLNTKKYNL--FKKTIQHYTKKEPEKQSFGENYKHNYGNIELKYQTTLSQLLKDSTDMHKEVHEAI-----CNMESVKMADGSSQQYGYVVYETVVTKGAKL--HIKNARDFVFVLINDRLVETVLNIQKAITINVEGYIRTGSANNIKILVENAGRVNYGKDIGNQRKGILGGVTLDNSDATGWTIYPL--------QFDEDLVSKLENNPTLWEPSDGEKENSQPTLYKGFLDIDGPPKDTYFKTRGWFKGVIFVNGKNLGRYWKRGPQFTLYVPKQWLKSGINTVLVFD 1916
L+ KG +F+LE F I G+IHYFR+ + W +R+ K K GLN++ Y+PWNLHEP+ GKF + L F+ + ++ ++RPGPYICSE DLGGLPSWLL D M++R+ Y GFT+AV YF+HL+ + P Q+ +GGPIIA QVENEYGS+ D YM +++ G+ EL DN +G+ + + V TIN + E + L +Q +P V E+W GWF WG ++ + + + KT+ ++ G S+N YMFHGGTNFGF NGA D Y+ D+TSYDYDA ++E GD K L F +I P ++ Y+ L D K + E I NME++ + G+ Q +GY++YET +T L H+ + R VFV + A+ + ++GY ++ILVEN GRVNYG++I +QRKG++G + L++S + IY L +F D S L PTL P + G L I P DT+ K GW KGV+F+NG+NLGRYW GPQ TLY+P WL SGIN V+VF+
Sbjct: 47 LQAKGWNFMLEDSTFWIFGGSIHYFRVPREYWRDRLLKMKACGLNTLTTYVPWNLHEPERGKFDFSGNLDLEAFVLMAAEIGLWVILRPGPYICSEMDLGGLPSWLLQDPGMRLRTTYKGFTEAVDLYFDHLMSRVVPLQYKRGGPIIAVQVENEYGSYNKDPAYMPYVKKALEDRGIVELLLTSDNKDGLSK-GIVQGVLATINLQSTHELQLLTTFLFNVQGTQPKMVMEYWTGWFDSWGGPHNILDSSEVLKTVSAIVDAGSSINLYMFHGGTNFGFMNGAMHFHD---YKSDVTSYDYDAVLTEAGDYTAKYMKLRDFFGSISGIPLPPPPDLL-----------PKMPYEPLTPVLYLSLWDALKYLGEPIKSEKPINMENLPVNGGNGQSFGYILYETSITSSGILSGHVHD-RGQVFVNTVSIGFLDYKTTKIAVPL-IQGY------TVLRILVENRGRVNYGENIDDQRKGLIGNLYLNDSPLKNFRIYSLDMKKSFFQRFGLDKWSSLPETPTL------------PAFFLGSLSISSTPCDTFLKLEGWEKGVVFINGQNLGRYWNIGPQKTLYLPGPWLSSGINQVIVFE 613 The following BLAST results are available for this feature:
BLAST of TCONS_00007712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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