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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007711 ID=TCONS_00007711|Name=TCONS_00007711|organism=Clytia hemisphaerica|type=transcript|length=794bp
cgtgtatttattTCCAGGgaaactaaaaataataaacacgaaaaaagaaa
agaagaatagAAAACAGCATATGAGCAATCTGCGTCCTATGGTGTTCCAG
CATCAtggataattaaaaaaatacaaaatggaTGACCATCTTGTTGGGTC
CTCTACCTCAGTCTACCTCTAGAATTTCATCTCCCGGAACAACATAGGGT
TGTAGAAGAGCATTTTTGTTGTTGATTTCCCATTTCAGTAAAATGGGTGA
CCATACTTCTGCTTTGATTGATTGTAAAGCTTATTTTACAATTACGAGAA
CCTGACCAAAAGTAAACGCTACATACCAGGTTGAAGAAGGACCAATTACA
ACAGGGAACAGCTTGCAAGTAGTCCAAAATCCAATGGGATAAGCAATGAA
TACAATACTGATGAAGATGTCATATAGATGATGATGTTAAGAACGAAAAC
ACATTATAAACCATGTGCGAAAGAATGGGTGAAGGTCATTAGAATCATTC
CAGACTGCGAAATAATGGAGAGAGTTTACCAAGAAATATGTTGGGTGTTT
TGTTGAAATACAATTGGgtgaaagaagagaaaataattataaaaagaaac
tGAAGGTTTGGAATTAACAAGACGAAAGAAATGGTGTAAATATGATGATA
CAAGTTGTGAGTTTTAATGCTAATTTGTTTTAgacatttgttttattttg
ttaatttttcattcataaTGTTTAAAGGTCGAAAGTTTTTGGGGTTTACA
CACATGGTCTGTTAAAACAAAATCGGTTTCAGAGAGTGGACAGG Run BLAST on NCBI transcript from alignment at sc0000079:244358..251040+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007711 ID=TCONS_00007711|Name=TCONS_00007711|organism=Clytia hemisphaerica|type=transcript|length=6683bp|location=Sequence derived from alignment at sc0000079:244358..251040+ (Clytia hemisphaerica)
cgtgtatttattTCCAGGgaaactaaaaataataaacacgaaaaaagaaa
agaagaatagAAAACAGCATATGAGCAATCTGCGTCCTATGGTGTTCCAG
CATCAtggataattaaaaaaatacaaaatggaTGACCATCTTGTTGGGTC
CTCTACCTCAGTCTACCTCTAGAATTTCATCTCCCGGAACAACATAGGGT
TGTAGAAGAGCATTTTTGTTGTTGATTTCCCATTTCAGTAAAATGGGTGA
CCATACTTCTGCTTTGATTGATTGTAAAGCTTATTTTACAATTACGAGAA
CCTGACCAAAAGTAAACGCTACATACCAGGTAAGATGTTTCAATCTAGAT
AGTTTTATAAGTATAGTGAATTACCCTAGTATTGGTTAAAAGTTGCCACT
TCACACTAAAAGATTCCCAAAGCACTTCAGTTCTGGGTAAGAGCAAGGGA
TGGCGTTGTATATTTTAAAGACAAAACGGGTGTACAATGCACCGAAAGAA
TATTCTAGAAAGTATAGATTAGTCTTGCAAATTCAAAACTCTCAACAATA
TGCTAATACAATGTTTTAGGAGATGGACCATCATATTTATTTAACATGTG
GTGTTCATTTAAAGGTTGAAGAAGGACCAATTACAACAGGGAACAGCTTG
CAAGTAGTCCAAAATCCAATGGGATAAGCAATGAATACAATACTGATGAA
GATGTCATATAGATGATGATGTTAAGAACGAAAACACATTATAAACCATG
TGCGAAAGAATGGGTGAAGGTATTACTTCTCTCAAGTTTTTAAGCATTAC
TTGTTCATATTTACACATCGGAAAGATGCAAAGAGGGAAAAGTGATCACC
ATAGAGACGAGGTATCGAAATTTTTACATACTTATTGTAAAGAGTGGAAC
TCTAATCATTCTTTTTCCCCCAAAGCCCGTAATttcgttgttactaaaag
aggtaacgagtggtaacgagtggtaacgatgtggtaacgagtggtaacga
ggtggtaacgatgtggtaacgaggtaacgagtggtaaccagttgaaaacg
gtggccctaagtctccaaatttgaatttctcgattctggtgtttttgcaa
cagatgctgatggttcttgaggttctgcagcaggacctggcagatctggt
gaatgtgcagtaaggattggagatttaggcaaatgttatggtggagttga
tggatctggtgaatgtgatggtaaagcttgttgtttgggtgaatgaaaag
gtggaattgatggttctggtgaatgtgaatcaaagattgatggttctgga
ggttctgcatcaggagttggtgattctgatgaatgtgcatcaggagttgg
tggttctggtgaatgttatggtggagttgatgattctggtgcataaaatg
ctggtgttgatggatctgatgaatccaatggtggagttggtgattttggt
gaatgtgcatcaggagttgatgcttctggtgaatgtgcagcaggagttga
tgctcctggtgaatgtgcagcaggagttggtggttctggtgaatgtacag
caggaggtagtggttctggtgaatgtgaagcaggagttgttgattctggt
gaatgtgcatcaggagttgatgcttctggttaatgtacagcaggagttgg
tggttctggtgaatgtacatcaggagttagtggttctggtgaatgtgaag
caggagttgttgattctggtgaatgtgcatcaggagttgatgcttctggt
gaatgtgcagcaggagttggtggttctggtgaatgtgcagcaggagttgg
tggttctggtgaatgtgcagcaggagttgatgctcctggtgaatgtgcag
caggagttggtggttctggtgaatgtgcagcaggagttggtggttctggt
gaatgtgcagcgggagttggtaattctggtgaatgcaatggtggagttgg
tggttctagtgaatgtacagcaggagttggtgattctggtggatgtgcag
caggagttggtggttctgttgAATGCAATGgcggagttggtggttctggt
gaatgtgcagcaggagttggtggttctgataaatccaatggtggagttgg
tgattttggtgaatgtgcatcaggagtcgatgtttctggtgaatgtacag
caggagttggtggttctgataAATCCAATGGTGgggttggtgattttggt
gaatgtgcatcaggagtcgatgtttctggtgaatgtacagcaggagttgg
tggttctggtgaatgtacagcaggagttggtggttctggtgaatgtacag
caggagttggtggttctggtgaatgtacagcaggaattggtggttctggt
gaatgtacagcaggagttggtggttctggtgaatgtacagcaggaattgg
tggttctggtgaatgtacagcaggagtNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNgaatgtgcagcaggagttggtgattctggtgaatgtgcagcaggagt
tggtggttctggtgaatggtcatcaggagttgatggttctggttaatGTG
CTGTAggatttgatggttctggtgaatttgatggtggcattgaagGTTTT
GATGAATGGTTGTAGGAGTTGATAGTTCTGCTGAATTTGCAGCAGGagtt
aatattttgataaattgttaTTGAGATGTCATTCATGGATGTAATCAAAA
TAAAGTTATGGTGAATCCGAAATTTTTCGCTAGATTAATGAACGTGTTGT
TATTACATCCATGAATAACATCTCAATAACAATTTATCAGTATATTAACT
CCTCCTGCAAATTCACCAAAACTATCAACTCCTACAGCACGTTCACCACA
ACCATCAATGCgaccatcaaattcaccagaatcatcaacttAACCAtccc
attcaccagaaccatcaaatcctgcagcacattaaccagaaccatcaatg
caaccatcaaattcaccagaaccatcaatgccaccatcacattcaccaga
accaccaactcctgctgtacattaaccagaagcatcaactcctgatgcac
attcaccaaaatcaccaactccaccattggattcatcagatcCATCAACC
CCAGCATTATAtgcaccagaatcatcaactccaccataacattcaccaga
accaccaactcctgctgtacattaaccagaagcatcaactcctgatgcac
attcaccaaaatcaccaactccaccattggattcatcagatccatcaaca
ccagcattatatgcaccagaatcatcaactccaccataacattcaccaga
accaccaactcctgctgcacattcaccagaatcaacaactcctgctgcac
attcaccagaaccaccatcacctgctgcacattcaccagaactaccaact
cctgctgcacattcaccagaaccaccaactcctgctgcacattcaccaga
agcatcaactcctgctgcacattcaccagaaccaccaactcctgctgcac
attcaccagaagcatcaactcctgctgcacattcaccagaaccaccaacc
cctgctgtaccgggtgcaccaaaaaaaagtatatgactttgtcgagatat
tgtgagcttcaggatttaaatgttttgttcatttttcttttattgtatag
aggatgctctaacttgaattttgagccatcatacattaattttgaaaaag
tagttcgaaagttatctccaaaaaactgactttttttccatgtcgaaatt
tcaaaaaatcctcaaaaacagcgagcaaacttttttctttacacataaaa
ataccaaaaaaaacaactgcgctcatcaaaactcgttactgaatttaaga
atatggtaaaacaagctattcccacatgggataatatttttggaaaggtt
gaaagatttttttggaaatctctaggagaggttttgatgttatgtgcgtg
ctatgtgagaaaacttttgaaaaaatagatcaccattccttgactagttg
ctcaaagaacttgggtctggctgcattgagtttgctggtgttggaaatgt
tcatgacatgcaaataagatggagaaactgttggcaaaatataacatgga
agaaaaaggaataaaaaaaacaatgaaattgtattattgtcattttgtct
tatttatagcgtgattgctgtttttaatgatttttttaaatttcgacatg
gaaaaaagtcagtgttttggaaataactttcgaactactttttcaaactt
aatgtatgatcatagtgtgcacccccccaGAATAGTGGGGGGGGGTTTTG
TTGatttgggtcgaaaattttcaggtgggatttggggttttccaggtttt
aggtgggagaaacaagttaaggtgggagTTAATTTCTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATCctctataaaataaaaaaagaatgaacaaaaaatttaa
atcctgaagctcacaatatctcgacaaacctgtatacttttttttggtgc
acccggtacattcaccagaaccactaactcctgatgtacattcaccagaa
ccaccaactcctgctgtacattaacCAGAGgcatcaactcctgatgcaca
ttcaccaaaatcacctactccaccattggattcatcagatccatcaacac
cagcattttatgcaccagaatcatcaactccaccataacattcaccagaa
ccaccaactcctgatgtacattcaccagaatcaccaactcctgatgcaga
acctccagaaccatcaatctttgattcacattcaccagaaccatcaATTC
CACCATTTCATTCACCCAAACAACAAGCTTTACCATCAaattcaccagat
ccatcaactccaccataacatttgcctaaatctccaattcttactgcaca
ttcaccagatctgccaggtcctgctgcagaacctcaagagccatcagcat
ctgttgcaaaaacaccagaatCGAGAAATTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctcgttaccac
atcgttaccactcgttaccactcgttaccactcgttacctcttttagtaa
caacgcataATTTCCTGAACTCCAGAAAATGAAAGTGctgaaaaacatca
aattttaagaGGGCCCACTTCCATGCTAGAATTAAAATACTGATACAATT
ACTCTCATTCTTATATTCATTAGGTCATTAGAATCATTCCAGACTGCGAA
ATAATGGAGAGAGTTTACCAAGAAATATGTTGGGTGTTTTGTTGAAATAC
AATTGGgtgaaagaagagaaaataattataaaaagaaactGAAGGTTTGG
AATTAACAAGACGAAAGAAATGGTGTAAATATGATGATACAAGTTGTGAG
TTTTAATGCTAATTTGTTTTAgacatttgttttattttgttaatttttca
ttcataaTGTTTAAAGGTCGAAAGTTTTTGGGGTTTACACACATGGTCTG
TTAAAACAAAATCGGTTTCAGAGAGTGGACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007711-exon-sc0000079-1491911889:244358..244686 | TCONS_00007711-exon-sc0000079-1491911889:244358..244686 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1510915933:244358..244686 | TCONS_00007711-exon-sc0000079-1510915933:244358..244686 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1575043694:244358..244686 | TCONS_00007711-exon-sc0000079-1575043694:244358..244686 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1491911889:244972..245126 | TCONS_00007711-exon-sc0000079-1491911889:244972..245126 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1510915933:244972..245126 | TCONS_00007711-exon-sc0000079-1510915933:244972..245126 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1575043694:244972..245126 | TCONS_00007711-exon-sc0000079-1575043694:244972..245126 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1491911889:250731..251040 | TCONS_00007711-exon-sc0000079-1491911889:250731..251040 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1510915933:250731..251040 | TCONS_00007711-exon-sc0000079-1510915933:250731..251040 | Clytia hemisphaerica | exon |
| TCONS_00007711-exon-sc0000079-1575043694:250731..251040 | TCONS_00007711-exon-sc0000079-1575043694:250731..251040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:244358..251040 + |
Blast
The following BLAST results are available for this feature:
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