TCONS_00007710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007710
Unique NameTCONS_00007710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007710 ID=TCONS_00007710|Name=TCONS_00007710|organism=Clytia hemisphaerica|type=transcript|length=485bp
ATTCAAAATGAAGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAA
TGGTTACCTCAGCTGATGatttttGCAAGGACAACAACGTGTGGTGTAAA
TACATGGCTAGATATGGTGCATGCTCGTGGAACGTACAAACCATCGAAAC
ATGCCCCAGAACTTGCGGAAAGTGCTCAGTTCATTGTGTTATCAGCAATG
GTGCAGTCCGTAAAGAATGCGGATATGTTGGTATTGGTCGTGATGAATGC
TTCACCAAAGGATGTTGTTGGGTTCCTCTACCAAGTGGTCAAAATGGTGC
ATGGTGTTATGAATCTCCAAGTAACAAGCTTCAATAAAGGATATGCATGT
TTTGAAAGTACAGTAGCtatatttatttaatttgattGTTGATAATTAAT
TTAATGTGATTTGataattaatttaatttgatgacttaaacaaaatttac
aaagatAAAACGTCTCCCAAGTAGCTTTCTTTCCG
Run BLAST on NCBI

protein sequence of TCONS_00007710-protein

>TCONS_00007710-protein ID=TCONS_00007710-protein|Name=TCONS_00007710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
FKMKLLFAALLVFTISMVTSADDFCKDNNVWCKYMARYGACSWNVQTIET
CPRTCGKCSVHCVISNGAVRKECGYVGIGRDECFTKGCCWVPLPSGQNGA
WCYESPSNKLQ
Run BLAST on NCBI

transcript from alignment at sc0000079:228312..231927+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007710 ID=TCONS_00007710|Name=TCONS_00007710|organism=Clytia hemisphaerica|type=transcript|length=3616bp|location=Sequence derived from alignment at sc0000079:228312..231927+ (Clytia hemisphaerica)
ATTCAAAATGAAGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAA
TGGTTACCTCAGCTGATGGTATGcacattcttttattttgagaataatct
aatattttgatatttttcaagtgtttAATACTACGCAGCTTTATTATGTA
TTTAAGCTCAAAGAATACTTCACAGCtgccgggtgcgccacaaaaaagtt
tctctttttaaaacttattttctcgaaatctaaaatttataaaagaacAG
AATGAACccggtaaagatttttttaaagtttttcacccggGCACACCCCG
GTCATTAATTACACATTATGTGGGTCAACCCgagtttcagattttttgcg
AGGAGCAACCAGTATAAGTCAATTTCTCCTTTAATTTCTAATTcgtattt
ttgacataatcaatTCAATGGCAAAGTTATCTATAATTTTTACCTGTGGT
GCTTACTTGTTTCCGATAGAAAAATCTCAATGTCTTTGCCCAATTGAAAT
TTTCACCCAGTGAAATTTTCAGACTCGAAATTGGTTTTAAAATACCaacg
ggtcactgagacaggggcaTTTCCCTCTTGGTCAAGATTAGGTATTGAAT
TATTCATACTAATCCGTCGTAAGACAAAAAGTGTATCAAACCCAATATTA
TTTCAGCTAGCTGATCAGCCGAAATCCTAGTGGATTTATATTTTAAAGTC
TTCTTtatcttcaaaatatttcagatttttGCAAGGACAACAACGTGTGG
TGTAAATACATGGCTAGATATGGTGCATGCTCGTGGAACGTACAAACCAT
CGAAACATGCCCCAGAACTTGCGGAAAGTGCTCAGGTATAAAGCAATTAT
CAAATTTCAGATGAAACTAACACACATCGTTGTTTCCATTTAACGTtaat
gaatgttgaaacaacgttgctgTGAGTCAGCTGAAGTCATTTCTCTTGAT
CTCCCCAGCCCAGTCTGGACTTTTCGATTAGTATGGCGGATTTAAGCCAA
TCTATTTTAAATATTCTCTTTTTCTtatcgaaaaattgatttttattttc
ttatctacgaaacgaaaataaattaatttatttcctAATTCTTCTAAAAT
CTTGTCAAAGAcccaatgaaaattgaaaacacgATGAAACAACAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCGAAAACGTATACA
ACTTGAAAACGCATACAACCTGAAAACGTATGTAACCCAAAAACGCATAC
AACCTGAAAACGCATACAACCTGAAAACGCATCCCAACTGAAAATGCATC
CCACCTAAAAACGCATCCCAACTAAAAACGCACCCCACCTAAAAACGTAT
ACAACTTGAAAACGCATACAACCCGAAACCGTATGTAGCCTGAAAACTTA
TACAGCCCGAAAACGTATACAACCTGAAAACGTATGTGACCCGAAAACGT
ATGTAACCCGAAAACGTATACAACCTGAAAACGTATACAACTTGAAAACG
TATACGAAAACGTATACAACTTGAAAACGTATACAACTTGAAAACGTAAG
CAATTTGAAAACGTAAGCATTGAAAACGTATGCAATTTGAAATGTTTGCA
ACCTGAAAATGTATGAAATTAATCGATAATCGAATTCTTTAATCTAATTA
AGCAATTATATGCTAAAATACCtaaaatccaaaattgaaaatcatattcg
tttaaaaacaatataacgtatcataaaatattttgcctTTAGCGTAAATT
CTAATTCTCCAAAAACAAAAAGGAGGAAGAGAAGTTTCGAGAATACGACT
TGTAACAGGTTTGAACGACGTGTGGTGCAAATAAcaaaatctaccatttt
tatgaACACGTGAAACTCTCAAAAACTCTAATTTACAGAACggtaatagt
aataataatatTAAACGCCCCTTGATTTTCTACGAAAACGTAAATAAATA
CACGTAGTTGAACTACTTCATTTGGTATGTGCGACCCAACGCATATTCCA
ACCTGCCTCGAATAGGTGTCTTCAATAAGGTAGACTGGTAAACCATGTCT
TTGAACTTCGTTGCAGCTCACGCTTGCAATGGGCTCGCTACGTTCGCTGA
Ataccactctcccgcggcaatttctattttttataagaactctttatttc
CGCGTTCTTGTGACCAATGAAAggcagacgcttgctagtctatgAATAAG
GTGTTTTTTGACGCCCTAATATCTGATTCTTACATCCAAAGATACTATTC
TATTCTTTTTACCATAAACCTTCAGTTCATTGTGTTATCAGCAATGGTGC
AGTCCGTAAAGAATGCGGATATGTTGGTATTGGTCGTGATGAATGCTTCA
CCAAAGGATGTTGTTGGGTTCCTCTACCAAGTGGTCAAAATGGTGCATGG
TGTTATGAATCTCCAAGTAGGTTAACTAATGATAGTTGGTTTatattatt
tttgacagatAATGTGTTGCTATATGGGGCTTTTAAATTGAATATAGTGG
GTGGAGGATAAAACGTTTTGTGAATCTTACCCAAGTatcagttgaccccc
cccccccccccaaattcccccccccccccccctggaaattcaCCCCTAaa
ctagatttttcactacccgcGGACAAAATATCAAGATTTGTACAAAGATT
TTATGGAAGAGCCGATGTTCCCATACTCCTGTAGGCTGTGCACATCCCTG
AAAGAGGATGCAAATCACACTCGAAAACGCTTGTTTTTTTGTATGCGTGC
TTACAGATGCCTAATAAACTTCCCCAGCTTGtccatttttagatttttcc
aaCACCCCGGACTTTATTAAGATCCCCCGCCcccttttatcaatttttga
aaatatcttcagCTGTCAGAAGAAGAACccatctttttattttaatttca
gGTAACAAGCTTCAATAAAGGATATGCATGTTTTGAAAGTACAGTAGCta
tatttatttaatttgattGTTGATAATTAATTTAATGTGATTTGataatt
aatttaatttgatgacttaaacaaaatttacaaagatAAAACGTCTCCCA
AGTAGCTTTCTTTCCG

Coding sequence (CDS) from alignment at sc0000079:228312..231927+

>TCONS_00007710 ID=TCONS_00007710|Name=TCONS_00007710|organism=Clytia hemisphaerica|type=CDS|length=1344bp|location=Sequence derived from alignment at sc0000079:228312..231927+ (Clytia hemisphaerica)
TTCAAAATGAAGCTCCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAAT
GGTTACCTCAGCTGATGatttttGCAAGGACAACAACGTGTGGTGTAAAT
ACATGGCTAGATATGGTGCATGCTCGTGGAACGTACAAACCATCGAAACA
TGCCCCAGAACTTGCGGAAAGTGCTCAGTTCATTGTGTTATCAGCAATGG
TGCAGTCCGTAAAGAATGCGGATATGTTGGTATTGGTCGTGATGAATGCT
TCACCAAAGGATGTTGTTGGGTTCCTCTACCAAGTGGTCAAAATGGTGCA
TGGTGTTATGAATCTCCAAGTAACAAGCTTCAATAATTCAAAATGAAGCT
CCTTTTTGCAGCACTCCTTGTGTTCACCATTTCAATGGTTACCTCAGCTG
ATGatttttGCAAGGACAACAACGTGTGGTGTAAATACATGGCTAGATAT
GGTGCATGCTCGTGGAACGTACAAACCATCGAAACATGCCCCAGAACTTG
CGGAAAGTGCTCAGTTCATTGTGTTATCAGCAATGGTGCAGTCCGTAAAG
AATGCGGATATGTTGGTATTGGTCGTGATGAATGCTTCACCAAAGGATGT
TGTTGGGTTCCTCTACCAAGTGGTCAAAATGGTGCATGGTGTTATGAATC
TCCAAGTAACAAGCTTCAATAATTCAAAATGAAGCTCCTTTTTGCAGCAC
TCCTTGTGTTCACCATTTCAATGGTTACCTCAGCTGATGatttttGCAAG
GACAACAACGTGTGGTGTAAATACATGGCTAGATATGGTGCATGCTCGTG
GAACGTACAAACCATCGAAACATGCCCCAGAACTTGCGGAAAGTGCTCAG
TTCATTGTGTTATCAGCAATGGTGCAGTCCGTAAAGAATGCGGATATGTT
GGTATTGGTCGTGATGAATGCTTCACCAAAGGATGTTGTTGGGTTCCTCT
ACCAAGTGGTCAAAATGGTGCATGGTGTTATGAATCTCCAAGTAACAAGC
TTCAATAATTCAAAATGAAGCTCCTTTTTGCAGCACTCCTTGTGTTCACC
ATTTCAATGGTTACCTCAGCTGATGatttttGCAAGGACAACAACGTGTG
GTGTAAATACATGGCTAGATATGGTGCATGCTCGTGGAACGTACAAACCA
TCGAAACATGCCCCAGAACTTGCGGAAAGTGCTCAGTTCATTGTGTTATC
AGCAATGGTGCAGTCCGTAAAGAATGCGGATATGTTGGTATTGGTCGTGA
TGAATGCTTCACCAAAGGATGTTGTTGGGTTCCTCTACCAAGTGGTCAAA
ATGGTGCATGGTGTTATGAATCTCCAAGTAACAAGCTTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004370XLOC_004370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007710-exon-sc0000079-1491911889:228312..228379TCONS_00007710-exon-sc0000079-1491911889:228312..228379Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1510915933:228312..228379TCONS_00007710-exon-sc0000079-1510915933:228312..228379Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1575043694:228312..228379TCONS_00007710-exon-sc0000079-1575043694:228312..228379Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1491911889:229036..229146TCONS_00007710-exon-sc0000079-1491911889:229036..229146Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1510915933:229036..229146TCONS_00007710-exon-sc0000079-1510915933:229036..229146Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1575043694:229036..229146TCONS_00007710-exon-sc0000079-1575043694:229036..229146Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1491911889:231137..231277TCONS_00007710-exon-sc0000079-1491911889:231137..231277Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1510915933:231137..231277TCONS_00007710-exon-sc0000079-1510915933:231137..231277Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1575043694:231137..231277TCONS_00007710-exon-sc0000079-1575043694:231137..231277Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1491911889:231763..231927TCONS_00007710-exon-sc0000079-1491911889:231763..231927Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1510915933:231763..231927TCONS_00007710-exon-sc0000079-1510915933:231763..231927Clytia hemisphaericaexon
TCONS_00007710-exon-sc0000079-1575043694:231763..231927TCONS_00007710-exon-sc0000079-1575043694:231763..231927Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007710-proteinTCONS_00007710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:228312..231927 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.125349	0	0	0.329164	0	0.495785	0	0	0	0	0	0.341958	0	0	0	0.421765	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000519P_trefoil_dom
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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