|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007704 ID=TCONS_00007704|Name=TCONS_00007704|organism=Clytia hemisphaerica|type=transcript|length=1453bp
GTTTGTGCTAAGGAGGCAGTCAATGATGTTAATGACGTCAGCAACGATAT
TGATTTGCCAGAAGAAATTGCTGCATATTCTACTCTAAAAGAAGAACAAG
CTGTAGAAGACGAAGATgaagaaaacgaaagcgaaCAAGATGAAGAGCAT
GATCAAAATGATGAAGAAGATCAAAGTAATGACGAAATAGccgaagatga
agatgaagtgGAAAATGATGAAAGTAATAACAATCAGAAACGTGGATTGC
ATTATGGTGGTCGTGGTCGTGGTCTTTTCAGAGGTGGTTTTCGAGGTCGA
CTTTTTGGCAGATTTGGAAGATTTAGATACCCTGGATTTGGTTATCCATA
TTATGGAAATGGTTTTGGATATCCATATTTCCCATATTATTACCGACCAA
ATTTGATTCGAGGACGTGTGATTGCTCGTAGAGCCGCTTTACCATTGGGA
TGGAGAGTTTCCGTACAAATCCGACCCCTGAGAGTCGTAAATGGTTTCTC
TAGCATCTTTACACGCTTCAATTGGTGGAAACAAAAAGAACTACGGTGAC
TGAGTCCCTGCCATCTTTTTCCGCCCGAGATCCACCCGATTACACATTTG
CTCAGCTGTCAGTGGAAATCCAAACTATTGTTTTGACTCCCTTCCAATCC
GACGCAACCGCTACACGAACGTTGTCATTCAACAAGTACAGAAACCTAAT
TTCGGAAACCTTTATTTCTATCAAGTCTTCATCAATGGTAGAAAGGTTAA
AGATGTCTTGAATACAAAACCACAAGTTTTCCGCAACGTTCAATATTTTG
CCAGCAATCCATTCCTTCGACCAGCCGTCGCTAACATCAGAAATTTCAGA
CTCACTAACACACCCAAAAGGCCGATTACTGCTCTGGTGAAAAGTAAAGT
CATTCAAAAAGTTCCACTTTTACCATCGACATGGAGAATCACATTCCAAC
TTCGTCCTTATGCAGCAGTGAGTGGAGACTCGAGCATCTTGCATGCTTCA
ATTGGTGGTGACGCAAAGAATTACGGTGACAGAAACCCTGCTGTTTTCTT
CATTTCTGGCACAACTCGATTAAGAATCTGTTCAGCAATCAGTGGAAACC
CCAACCATTGCTGGGATAGTCCTACTCCAATCCCATTGGCTCGTTACAGC
ACCATCCTCATCCAACAAGTTCTCAGACGTACACATGGTTATTATAAAAC
CTTCTTTGAAATCTTCATCAATGGTCGACTTGTTCGAAGAGTGATCAACA
CTCAACCACGTGCTTTCAAAAATGTCAGCTATTTTGCAAGTAATCCTTTC
ATCCAAGCTGCTATTGGTGATATCAGAAATTTCAACTTACGTACCTTCGT
CAAGAAATACTAAATGGATAAGCATATtgatattttataatttatataTC
AAAAGGTGTTGGTaatagttttatattttttacattttctaacATTCTTA
GCG Run BLAST on NCBI protein sequence of TCONS_00007704-protein >TCONS_00007704-protein ID=TCONS_00007704-protein|Name=TCONS_00007704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
VCAKEAVNDVNDVSNDIDLPEEIAAYSTLKEEQAVEDEDEENESEQDEEH
DQNDEEDQSNDEIAEDEDEVENDESNNNQKRGLHYGGRGRGLFRGGFRGR
LFGRFGRFRYPGFGYPYYGNGFGYPYFPYYYRPNLIRGRVIARRAALPLG
WRVSVQIRPLRVVNGFSSIFTRFNWWKQKELR Run BLAST on NCBI transcript from alignment at sc0000079:174191..176689+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007704 ID=TCONS_00007704|Name=TCONS_00007704|organism=Clytia hemisphaerica|type=transcript|length=2499bp|location=Sequence derived from alignment at sc0000079:174191..176689+ (Clytia hemisphaerica)
GTTTGTGCTAAGGAGGCAGTCAATGATGTTAATGACGTCAGCAACGATAT
TGATTTGCCAGAAGAAATTGCTGCATATTCTACTCTAAAAGAAGAACAAG
CTGTAGAAGACGAAGATgaagaaaacgaaagcgaaCAAGATGAAGAGCAT
GATCAAAATGATGAAGAAGATCAAAGTAATGACGAAATAGccgaagatga
agatgaagtgGTAGTGAATATGTTTTTGAGTATATTATTTTGTATCTCAG
TTGTTAATTAGGCCCTAATACTTTATCACTGAAAATTCGGATGGGCCTTA
GtaactttttttcattgaaaaaaaagaacttaCAATTCCTCCAACACTTT
GGTTTAGCTATAAGGAGCACAGAAAACACGCAACAAAGACTTACTAAATA
AAAGCTCGTAACCGATACAAGTTATggttgaattttctttttaatttctt
ttcctTATAGGAAAATGATGAAAGTAATAACAATCAGAAACGTGGATTGC
ATTATGGTGGTCGTGGTCGTGGTCTTTTCAGAGGTGGTTTTCGAGGTCGA
CTTTTTGGCAGATTTGGAAGATTTAGATACCCTGGATTTGGTTATCCATA
TTATGGAAATGGTTTTGGATATCCATATTTCCCATATTGTAAGTGAAATT
TCCATTTATCAAATTGATTTCTATTAGGATCCAAATATGTTATAAATTAT
GCCTAAGTTCCGATCTGTTATTTCCCTGTAGAAAAATACAATGGactaat
tcaatttttttgaacatttcttaaatttaacaaaatctCGGCTTTTCCTT
ACGGCTGTTCAGTTTGTAGCTTTTTACAAATATTCGCCCAAGATACTTAA
AAGCGATCTTACTACAATGTGAAGCAAAACATGTAAAACTGAAAATACCA
ACAAAGTGCTTAGGAAATTGTCTGATGAGATAGACTTATAAAGAAGATAT
TacgaaaccaaaataatttgtAATATTTTCGCCCCATTGTTTTCGTCGGA
ACAGAACTGCTTTTTTCTTGCTTTGAGGCATTGGGAAACAAATTTGAGCA
TTTACCTATTTGTGACATCTGGACATTGGTTTTATACTACTTTCTTTCTT
CTATTTTTAGATTACCGACCAAATTTGATTCGAGGACGTGTGATTGCTCG
TAGAGCCGCTTTACCATTGGGATGGAGAGTTTCCGTACAAATCCGACCCC
TGAGAGTCGTAAATGGTTTCTCTAGCATCTTTACACGCTTCAATTGGTGG
AAACAAAAAGAACTACGGTGACTGAGTCCCTGCCATCTTTTTCCGCCCGA
GATCCACCCGATTACACATTTGCTCAGCTGTCAGTGGAAATCCAAACTAT
TGTTTTGACTCCCTTCCAATCCGACGCAACCGCTACACGAACGTTGTCAT
TCAACAAGTACAGAAACCTAATTTCGGAAACCTTTATTTCTATCAAGTCT
TCATCAATGGTAGAAAGGTTAAAGATGTCTTGAATACAAAACCACAAGTT
TTCCGCAACGTTCAATATTTTGCCAGCAATCCATTCCTTCGACCAGCCGT
CGCTAACATCAGAAATTTCAGACTCACTAACACACCCAAAAGGCGTAAGT
TGCTTTTATATTGTGTATTAAATAAGATATTCAGGTAAAACCTTGATATT
TAGATAAAGTAATGAAACCCATTggcaaaaacattgaaaaaatagttttg
attaatgtttttgaaaggacaaaagcataatattttttgttccagTGAGA
GTTACCTCTTTTGAAACTTGTAGCAAAAAGAGACAATACTTGTCGATTCT
CCCTCATACCTACTACCCAGGAACCAGctcaaagaaaatagaaatgaaag
taagattttatttatttttacgtACGTTTTCAAACGGAATTTCATTGAAT
AGCTATTAATCTATTTAGCGATTACTGCTCTGGTGAAAAGTAAAGTCATT
CAAAAAGTTCCACTTTTACCATCGACATGGAGAATCACATTCCAACTTCG
TCCTTATGCAGCAGTGAGTGGAGACTCGAGCATCTTGCATGCTTCAATTG
GTGGTGACGCAAAGAATTACGGTGACAGAAACCCTGCTGTTTTCTTCATT
TCTGGCACAACTCGATTAAGAATCTGTTCAGCAATCAGTGGAAACCCCAA
CCATTGCTGGGATAGTCCTACTCCAATCCCATTGGCTCGTTACAGCACCA
TCCTCATCCAACAAGTTCTCAGACGTACACATGGTTATTATAAAACCTTC
TTTGAAATCTTCATCAATGGTCGACTTGTTCGAAGAGTGATCAACACTCA
ACCACGTGCTTTCAAAAATGTCAGCTATTTTGCAAGTAATCCTTTCATCC
AAGCTGCTATTGGTGATATCAGAAATTTCAACTTACGTACCTTCGTCAAG
AAATACTAAATGGATAAGCATATtgatattttataatttatataTCAAAA
GGTGTTGGTaatagttttatattttttacattttctaacATTCTTAGCG Coding sequence (CDS) from alignment at sc0000079:174191..176689+ >TCONS_00007704 ID=TCONS_00007704|Name=TCONS_00007704|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at sc0000079:174191..176689+ (Clytia hemisphaerica)
GTTTGTGCTAAGGAGGCAGTCAATGATGTTAATGACGTCAGCAACGATAT
TGATTTGCCAGAAGAAATTGCTGCATATTCTACTCTAAAAGAAGAACAAG
CTGTAGAAGACGAAGATgaagaaaacgaaagcgaaCAAGATGAAGAGCAT
GATCAAAATGATGAAGAAGATCAAAGTAATGACGAAATAGccgaagatga
agatgaagtgGAAAATGATGAAAGTAATAACAATCAGAAACGTGGATTGC
ATTATGGTGGTCGTGGTCGTGGTCTTTTCAGAGGTGGTTTTCGAGGTCGA
CTTTTTGGCAGATTTGGAAGATTTAGATACCCTGGATTTGGTTATCCATA
TTATGGAAATGGTTTTGGATATCCATATTTCCCATATTATTACCGACCAA
ATTTGATTCGAGGACGTGTGATTGCTCGTAGAGCCGCTTTACCATTGGGA
TGGAGAGTTTCCGTACAAATCCGACCCCTGAGAGTCGTAAATGGTTTCTC
TAGCATCTTTACACGCTTCAATTGGTGGAAACAAAAAGAACTACGGTGAG
TTTGTGCTAAGGAGGCAGTCAATGATGTTAATGACGTCAGCAACGATATT
GATTTGCCAGAAGAAATTGCTGCATATTCTACTCTAAAAGAAGAACAAGC
TGTAGAAGACGAAGATgaagaaaacgaaagcgaaCAAGATGAAGAGCATG
ATCAAAATGATGAAGAAGATCAAAGTAATGACGAAATAGccgaagatgaa
gatgaagtgGAAAATGATGAAAGTAATAACAATCAGAAACGTGGATTGCA
TTATGGTGGTCGTGGTCGTGGTCTTTTCAGAGGTGGTTTTCGAGGTCGAC
TTTTTGGCAGATTTGGAAGATTTAGATACCCTGGATTTGGTTATCCATAT
TATGGAAATGGTTTTGGATATCCATATTTCCCATATTATTACCGACCAAA
TTTGATTCGAGGACGTGTGATTGCTCGTAGAGCCGCTTTACCATTGGGAT
GGAGAGTTTCCGTACAAATCCGACCCCTGAGAGTCGTAAATGGTTTCTCT
AGCATCTTTACACGCTTCAATTGGTGGAAACAAAAAGAACTACGGTGAGT
TTGTGCTAAGGAGGCAGTCAATGATGTTAATGACGTCAGCAACGATATTG
ATTTGCCAGAAGAAATTGCTGCATATTCTACTCTAAAAGAAGAACAAGCT
GTAGAAGACGAAGATgaagaaaacgaaagcgaaCAAGATGAAGAGCATGA
TCAAAATGATGAAGAAGATCAAAGTAATGACGAAATAGccgaagatgaag
atgaagtgGAAAATGATGAAAGTAATAACAATCAGAAACGTGGATTGCAT
TATGGTGGTCGTGGTCGTGGTCTTTTCAGAGGTGGTTTTCGAGGTCGACT
TTTTGGCAGATTTGGAAGATTTAGATACCCTGGATTTGGTTATCCATATT
ATGGAAATGGTTTTGGATATCCATATTTCCCATATTATTACCGACCAAAT
TTGATTCGAGGACGTGTGATTGCTCGTAGAGCCGCTTTACCATTGGGATG
GAGAGTTTCCGTACAAATCCGACCCCTGAGAGTCGTAAATGGTTTCTCTA
GCATCTTTACACGCTTCAATTGGTGGAAACAAAAAGAACTACGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007704-exon-sc0000079-1491911889:174191..174400 | TCONS_00007704-exon-sc0000079-1491911889:174191..174400 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1510915933:174191..174400 | TCONS_00007704-exon-sc0000079-1510915933:174191..174400 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1575043694:174191..174400 | TCONS_00007704-exon-sc0000079-1575043694:174191..174400 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1491911889:174651..174828 | TCONS_00007704-exon-sc0000079-1491911889:174651..174828 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1510915933:174651..174828 | TCONS_00007704-exon-sc0000079-1510915933:174651..174828 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1575043694:174651..174828 | TCONS_00007704-exon-sc0000079-1575043694:174651..174828 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1491911889:175301..175784 | TCONS_00007704-exon-sc0000079-1491911889:175301..175784 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1510915933:175301..175784 | TCONS_00007704-exon-sc0000079-1510915933:175301..175784 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1575043694:175301..175784 | TCONS_00007704-exon-sc0000079-1575043694:175301..175784 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1491911889:176109..176689 | TCONS_00007704-exon-sc0000079-1491911889:176109..176689 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1510915933:176109..176689 | TCONS_00007704-exon-sc0000079-1510915933:176109..176689 | Clytia hemisphaerica | exon |
| TCONS_00007704-exon-sc0000079-1575043694:176109..176689 | TCONS_00007704-exon-sc0000079-1575043694:176109..176689 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:174191..176689 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
