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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007695 ID=TCONS_00007695|Name=TCONS_00007695|organism=Clytia hemisphaerica|type=transcript|length=1319bp
tagaaatctaaaaaaaagcaATAATGAAATGTCTTTTTTCGATCATTTGA
AGTCAACACTTTTTGGTTGTGTTAGATTCATTGGTATCCTTGTATTTCTT
GTATCATTATTCTTTATAATGAGAGATTATTCCGGAATTCAATTTCAACA
TAATCGGATTCTTCAAATATCTCGATTACCCAAATCGTTACACAGTCAAC
CTTCAGATCTCAAACATAAAAAGAGTcataaaaagataaaagagacAAAT
GGAAGAGATCAATGCTTAACAGAGCATTTCAATGATATCTTATTTGTTGC
AGCTTTCGGCGCTATGTTAGATTATGAATCAATACCACTGTTCGAAGTTA
TGTATAAAAAGGTGTTCCGTAATCGTCTATATTGCGGACCCGAATATATG
AAACAGACTGCATCCAAGTCAGCAATTTTCATTAAACAAAACACACGTTA
TGGTGCATTTCTTTACGACTGCTTAACACAAGTTTTGAAAAACCATAACA
ACTATACTGGGTATATTTTTGTATCAGAAAGTACTATTGTAAACCCAAAG
AAGCTTGCAACACTAAATAAAAACTATATCTGGGAAAGCAATCGGACCGA
GTTGGGTCCGACTCTTTACGGGCAAATACCGAATACATCAGAATGGTGGA
CTAGCCCATGGGGAATGCAAGCTATAGAAAAACTATATGAATACCTTACT
GAAGTTTCGTACTATAACATACGGAAAACCAAAATGACGGAAGGACGCTG
GACTCCGGAATGGGACATCGGACAGGTCTTAAATAATTGGTTATGGAACG
GTAAAGGAGAATTCGGGACTTACTGGAGTCAAGAAACGTTTTTATATTTG
CCAAAACGATACACTAGCCTTTATCTGAATATTACAAAACACGCGCGGCC
GAGTGGTGTCCGCCATGAAATCGCTTTACCAACTTTGGTCCGAATGATTG
AGTTGGACTCGTCTATTCAAAAACTATCAACAGGTGTTATAAGTAAATCT
GACAAATTTGTATTGGATAAGCGAGACTTATTTGAGGAGATGATGGGAAC
GAACGATTTGGTTTATGTGACAGGGAAAAGAAATGAGAAGAATAAAATTC
TGAATCATTTGACTTTTAAAGAGCACGGAGTTggagaatttttgaaatat
aatgatTGTAAATGAACTTATTATACAgtgaactctcgctaattcgaact
tttatgattagaatctttctataattcgaactaattcttaGTTCCCGTTA
AAGATAGAAatcctctttaaaaaaactccCTATTATTCGAATCTGTCTGT
AATTCGAACATATTCGAAC Run BLAST on NCBI protein sequence of TCONS_00007695-protein >TCONS_00007695-protein ID=TCONS_00007695-protein|Name=TCONS_00007695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
RNLKKSNNEMSFFDHLKSTLFGCVRFIGILVFLVSLFFIMRDYSGIQFQH
NRILQISRLPKSLHSQPSDLKHKKSHKKIKETNGRDQCLTEHFNDILFVA
AFGAMLDYESIPLFEVMYKKVFRNRLYCGPEYMKQTASKSAIFIKQNTRY
GAFLYDCLTQVLKNHNNYTGYIFVSESTIVNPKKLATLNKNYIWESNRTE
LGPTLYGQIPNTSEWWTSPWGMQAIEKLYEYLTEVSYYNIRKTKMTEGRW
TPEWDIGQVLNNWLWNGKGEFGTYWSQETFLYLPKRYTSLYLNITKHARP
SGVRHEIALPTLVRMIELDSSIQKLSTGVISKSDKFVLDKRDLFEEMMGT
NDLVYVTGKRNEKNKILNHLTFKEHGVGEFLKYNDCK Run BLAST on NCBI transcript from alignment at sc0000079:100046..102617+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007695 ID=TCONS_00007695|Name=TCONS_00007695|organism=Clytia hemisphaerica|type=transcript|length=2572bp|location=Sequence derived from alignment at sc0000079:100046..102617+ (Clytia hemisphaerica)
tagaaatctaaaaaaaagcaATAATGAAATGTCTTTTTTCGATCATTTGA
AGTCAACACTTTTTGGTTGTGTTAGATTCATTGGTATCCTTGTATTTCTT
GTATCATTATTCTTTATAATGAGAGGTAAGGCTCTCTTGTTccacactgg
gcgaaataagagatttccaatcctggaaatatcttgaaaatatgatattt
ctatttacatttataaatatggaaatatgacttttctatatttccaaatt
tGAGGAAATATCATgtttcatgatatttccaaatctgaaacatcatattt
tcaaaatttggaaatattttgaaaatatgatgtttcaatgaatttcagat
ttggaaatatcatgaaacatggaaaatggaaatatggaaatatagaaaag
tcatactTCGACAGGATTGGGATCAGGATTGGATCTTATTTCGCAGTTGA
TGCTTTCTAATTCGACTTTCTACCACTATATATCACGTTTCATTATTCGA
TAACTTTTACCCATGAACCAACCATTTGATTCGCTCCCTTAatcaatgaa
aatcaaattttccttgaaaattgaattagagaTCAAGTCTAATTATTAGC
AGATCATTTATTGAAACAAAGTTAATGTTATTAAATTCGAATTTGTTGcg
aaaaatccagtgggaatggttttggagtgcaatttttaaaaattgaattt
caagtgGCGATGAAATTTCCCAATGGCGCTGAAATTCCAAGGTAGTTTCC
GACCGGGGACaagttttagccaaattttccagtggggctagggtcccagt
gggtctatgacacaggggtgtatagtAGGGGGTGAACCCTTAGGGCCCAT
GACATCTAATGGGTTTTAGCATTTAAAGTTACCAAGgggcagtgccgtag
gaagcgtTTTCATATTGAGGGTGCTAAAGCTTAGTGACActgcgagggcc
aaccatggtttggcccgagggggaaaattttgaaaatttgagctctagat
tgcttgagaatgcactcaattgtgacaattatgacaaattaaaaagaaaa
actttgcattttgcaaaataaccatttttgaaaaaagtattgggggcata
gccccccttgccccccccccagttgctacggcactgaggGGTTACGGAAA
AGAGCCTCCACACATTATTACAAAACCGATGGAAAGGCCCCTCAATAGCC
GATCTAACAGAGGCTCAAAATTCATAACGGAGAGAATTCTTTCAACCATA
TTCGTTGTAATGAAATGAAAGACTTCGTCATAAATTTTGAGCCCCCGTTA
GATTCACCAATGCTCCTGATAAGGGGCCCCAGTATTAAATGGGAAAATAA
TGTTGAAACAAACTTCTCTATTTTTTAGATTATTCCGGAATTCAATTTCA
ACATAATCGGATTCTTCAAATATCTCGATTACCCAAATCGTTACACAGTC
AACCTTCAGATCTCAAACATAAAAAGAGTcataaaaagataaaagagacA
AATGGAAGAGATCAATGCTTAACAGAGCATTTCAATGATATCTTATTTGT
TGCAGCTTTCGGCGCTATGTTAGATTATGAATCAATACCACTGTTCGAAG
TTATGTATAAAAAGGTGTTCCGTAATCGTCTATATTGCGGACCCGAATAT
ATGAAACAGACTGCATCCAAGTCAGCAATTTTCATTAAACAAAACACACG
TTATGGTGCATTTCTTTACGACTGCTTAACACAAGTTTTGAAAAACCATA
ACAACTATACTGGGTATATTTTTGTATCAGAAAGTACTATTGTAAACCCA
AAGAAGCTTGCAACACTAAATAAAAACTATATCTGGGAAAGCAATCGGAC
CGAGTTGGGTCCGACTCTTTACGGGCAAATACCGAATACATCAGAATGGT
GGACTAGCCCATGGGGAATGCAAGCTATAGAAAAACTATATGAATACCTT
ACTGAAGTTTCGTACTATAACATACGGAAAACCAAAATGACGGAAGGACG
CTGGACTCCGGAATGGGACATCGGACAGGTCTTAAATAATTGGTTATGGA
ACGGTAAAGGAGAATTCGGGACTTACTGGAGTCAAGAAACGTTTTTATAT
TTGCCAAAACGATACACTAGCCTTTATCTGAATATTACAAAACACGCGCG
GCCGAGTGGTGTCCGCCATGAAATCGCTTTACCAACTTTGGTCCGAATGA
TTGAGTTGGACTCGTCTATTCAAAAACTATCAACAGGTGTTATAAGTAAA
TCTGACAAATTTGTATTGGATAAGCGAGACTTATTTGAGGAGATGATGGG
AACGAACGATTTGGTTTATGTGACAGGGAAAAGAAATGAGAAGAATAAAA
TTCTGAATCATTTGACTTTTAAAGAGCACGGAGTTggagaatttttgaaa
tataatgatTGTAAATGAACTTATTATACAgtgaactctcgctaattcga
acttttatgattagaatctttctataattcgaactaattcttaGTTCCCG
TTAAAGATAGAAatcctctttaaaaaaactccCTATTATTCGAATCTGTC
TGTAATTCGAACATATTCGAAC Coding sequence (CDS) from alignment at sc0000079:100046..102617+ >TCONS_00007695 ID=TCONS_00007695|Name=TCONS_00007695|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at sc0000079:100046..102617+ (Clytia hemisphaerica)
agaaatctaaaaaaaagcaATAATGAAATGTCTTTTTTCGATCATTTGAA
GTCAACACTTTTTGGTTGTGTTAGATTCATTGGTATCCTTGTATTTCTTG
TATCATTATTCTTTATAATGAGAGATTATTCCGGAATTCAATTTCAACAT
AATCGGATTCTTCAAATATCTCGATTACCCAAATCGTTACACAGTCAACC
TTCAGATCTCAAACATAAAAAGAGTcataaaaagataaaagagacAAATG
GAAGAGATCAATGCTTAACAGAGCATTTCAATGATATCTTATTTGTTGCA
GCTTTCGGCGCTATGTTAGATTATGAATCAATACCACTGTTCGAAGTTAT
GTATAAAAAGGTGTTCCGTAATCGTCTATATTGCGGACCCGAATATATGA
AACAGACTGCATCCAAGTCAGCAATTTTCATTAAACAAAACACACGTTAT
GGTGCATTTCTTTACGACTGCTTAACACAAGTTTTGAAAAACCATAACAA
CTATACTGGGTATATTTTTGTATCAGAAAGTACTATTGTAAACCCAAAGA
AGCTTGCAACACTAAATAAAAACTATATCTGGGAAAGCAATCGGACCGAG
TTGGGTCCGACTCTTTACGGGCAAATACCGAATACATCAGAATGGTGGAC
TAGCCCATGGGGAATGCAAGCTATAGAAAAACTATATGAATACCTTACTG
AAGTTTCGTACTATAACATACGGAAAACCAAAATGACGGAAGGACGCTGG
ACTCCGGAATGGGACATCGGACAGGTCTTAAATAATTGGTTATGGAACGG
TAAAGGAGAATTCGGGACTTACTGGAGTCAAGAAACGTTTTTATATTTGC
CAAAACGATACACTAGCCTTTATCTGAATATTACAAAACACGCGCGGCCG
AGTGGTGTCCGCCATGAAATCGCTTTACCAACTTTGGTCCGAATGATTGA
GTTGGACTCGTCTATTCAAAAACTATCAACAGGTGTTATAAGTAAATCTG
ACAAATTTGTATTGGATAAGCGAGACTTATTTGAGGAGATGATGGGAACG
AACGATTTGGTTTATGTGACAGGGAAAAGAAATGAGAAGAATAAAATTCT
GAATCATTTGACTTTTAAAGAGCACGGAGTTggagaatttttgaaatata
atgatTGTAAATGAagaaatctaaaaaaaagcaATAATGAAATGTCTTTT
TTCGATCATTTGAAGTCAACACTTTTTGGTTGTGTTAGATTCATTGGTAT
CCTTGTATTTCTTGTATCATTATTCTTTATAATGAGAGATTATTCCGGAA
TTCAATTTCAACATAATCGGATTCTTCAAATATCTCGATTACCCAAATCG
TTACACAGTCAACCTTCAGATCTCAAACATAAAAAGAGTcataaaaagat
aaaagagacAAATGGAAGAGATCAATGCTTAACAGAGCATTTCAATGATA
TCTTATTTGTTGCAGCTTTCGGCGCTATGTTAGATTATGAATCAATACCA
CTGTTCGAAGTTATGTATAAAAAGGTGTTCCGTAATCGTCTATATTGCGG
ACCCGAATATATGAAACAGACTGCATCCAAGTCAGCAATTTTCATTAAAC
AAAACACACGTTATGGTGCATTTCTTTACGACTGCTTAACACAAGTTTTG
AAAAACCATAACAACTATACTGGGTATATTTTTGTATCAGAAAGTACTAT
TGTAAACCCAAAGAAGCTTGCAACACTAAATAAAAACTATATCTGGGAAA
GCAATCGGACCGAGTTGGGTCCGACTCTTTACGGGCAAATACCGAATACA
TCAGAATGGTGGACTAGCCCATGGGGAATGCAAGCTATAGAAAAACTATA
TGAATACCTTACTGAAGTTTCGTACTATAACATACGGAAAACCAAAATGA
CGGAAGGACGCTGGACTCCGGAATGGGACATCGGACAGGTCTTAAATAAT
TGGTTATGGAACGGTAAAGGAGAATTCGGGACTTACTGGAGTCAAGAAAC
GTTTTTATATTTGCCAAAACGATACACTAGCCTTTATCTGAATATTACAA
AACACGCGCGGCCGAGTGGTGTCCGCCATGAAATCGCTTTACCAACTTTG
GTCCGAATGATTGAGTTGGACTCGTCTATTCAAAAACTATCAACAGGTGT
TATAAGTAAATCTGACAAATTTGTATTGGATAAGCGAGACTTATTTGAGG
AGATGATGGGAACGAACGATTTGGTTTATGTGACAGGGAAAAGAAATGAG
AAGAATAAAATTCTGAATCATTTGACTTTTAAAGAGCACGGAGTTggaga
atttttgaaatataatgatTGTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007695-exon-sc0000079-1491911889:100046..100170 | TCONS_00007695-exon-sc0000079-1491911889:100046..100170 | Clytia hemisphaerica | exon |
| TCONS_00007695-exon-sc0000079-1510915933:100046..100170 | TCONS_00007695-exon-sc0000079-1510915933:100046..100170 | Clytia hemisphaerica | exon |
| TCONS_00007695-exon-sc0000079-1575043694:100046..100170 | TCONS_00007695-exon-sc0000079-1575043694:100046..100170 | Clytia hemisphaerica | exon |
| TCONS_00007695-exon-sc0000079-1491911889:101424..102617 | TCONS_00007695-exon-sc0000079-1491911889:101424..102617 | Clytia hemisphaerica | exon |
| TCONS_00007695-exon-sc0000079-1510915933:101424..102617 | TCONS_00007695-exon-sc0000079-1510915933:101424..102617 | Clytia hemisphaerica | exon |
| TCONS_00007695-exon-sc0000079-1575043694:101424..102617 | TCONS_00007695-exon-sc0000079-1575043694:101424..102617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:100046..102617 + |
Blast
The following BLAST results are available for this feature:
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