TCONS_00007692 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007692
Unique Name	TCONS_00007692
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3067

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000079:86382..92344+

transcript sequence

>TCONS_00007692 ID=TCONS_00007692|Name=TCONS_00007692|organism=Clytia hemisphaerica|type=transcript|length=3067bp
AGTCCGACCAAAGTATTTGAAACAGCATGGATGTTGCCGATTTGGATTTA
GAGGATGGACTCATGGTAACACCAAGCGAAGCCTACGAATTTACCGTTCA
TTTATACGGCCGCAGTGATAGCACATCAACAAAATGTGTCCTACAGATTC
ACTATCACGAAAAGACTTTATCGTTATTACGTCATGGACAAAAAGTTGAG
AATTATTTGTTCAGCTCTTTGAGAGATGTCGTCGGAGATGATGAAGTTCC
GAGATTGAAAATACGATTCGATGATTTCAATCAACTTGATATTGAGACTG
GAACATTGGAGAAAAAGAATGAGATTTTTACATTATTAACACAAATCATT
GATCAACAATATAGATCTGAAGACTCAAAAGAGGATGCCGTCGACCCTAG
GAGCCACACCATCAAAGAAGGGATCCTTGACAAGAATGGCCATGGTCTCT
TCGCCTCCTTCATGTGGCAAGAAAGGTACGTCAAATTGTATCCTGGTCGG
ATGGATTACCATCGTGTCAAGGCAACCAATCATGAAGGTCCTGCTCTGAA
TCAGGTTCGACTAACCTCCAATAAATGCTCTATTCGAGCAGTTGACGAGA
ATACTTTGATACTCGGCACACCGAATAGAGATTATATATTTCGAATGAGA
AAGCATGCTCACGTCGACCCTCGGACTATGCTTAATGACTGGAGATTGGC
TTTTGAGAGAGCAATTCAAAAAGGTTCAAAAGAAGTCAGTTTGGTGGACA
AACGAAGATTACAACACGAAAACAGATTACCCATCAATAGAGGTAAGGAA
GACGAAGTACCTCAACCATGTGAAGTCGGAAAGCCTTCGCCAGCAAATGA
AGaaacaaagtttgaaaatgCCCAGAATGCTGCTATTACGCAAGATGATA
AATCTGAAGCTTCAGCCATTTCAGCTGGAAATCAACAAACAGCAAAGATA
GAGAATGATTTTACAACCAACACAAAAGATGCCATTGGACAAGCTCTACT
GTCGATAGCTACTGCCAAAGAACCAACTTCATCCCAAAAGGCTCTTCAAA
GCGATGTAACTCCATCACCAAAACAACCAATTCCTACATCTGAACCATCC
ACAACTGAAcccattcataaaaaatcaagcACAGAGATATTGAAAGAGAC
ACTACCTGAAGCGACCAAATCTGAACCACAAATCAGTGCTTCAAAACCTG
ACGCCAGCACATCTAGAACGTCATCACAACCAACATCCATTGTACCTAAG
CCGCCTCCTTCGCCCGGAATTGGATCTGCCCCACCACCACCTCCGCCTGG
AAGTGGATCCgccccaccaccaccaccacctccaccaccgcCGCCAGGAT
CATCGACAGCATCCATTGTTCACCTTCCACCGAAGAAAGATATCATTCCA
AatcgaaaaatgaaaactctTCCCTGGTCAAAAGTTTCGGACGCTCAAAT
CAATACATCATTTTGGGGAAATGCCACAGACCGTACAAATCAAatcgatt
ttcaaaaacttgaaaagtcaTTTTACTTGAAATCTTCAGATACGGAGAAA
AAGGGAGCTCAAGAGCATCACGAGTCGCCAAAAcaagagaaaaagaaatc
attACTTGATCCTAAGAAAGCACAAACAATagggattttattaaaaaatc
caGAATTGGAGcttgaaaatgtgaaaaaacgattGTCAAAATTTGATGTA
AAGAAAGACGGCTCGCTTGATGGTTTGACTTCTGAAGaaattaaagcatt
aaaaatctGTGTGCCAACTGATGATGAAAGAAAATTGTTCCATAATAAGA
AAGAGAATGAACTCGTCGATGTTGACAAGTTGGTGTTCGAGCTGACCACC
ATTGATCCGATCGTTTTACAAGATATGTTGGCAAACTTGCTTATTATCCG
TGAAATCCCCGAGCAATTAAGAGGTATTGAGCCACCAATCACAAATGTTA
TCAATGGTTATAAATGTTTACGAGATAGCaaagattttaagaaactcctC
GAGTATATCTTATCCATTGGCAATTATATGAACGGTGGTACCAAAGAGGG
ATGTGCTTATGGCTTTCGGCTAAGCGCGTTACTTAAACTAGCCGAAATCA
AGAGCGCAGATGAGAAAGAGTCGGTACTACAGTTCCTAGTTGAAGAGCTT
TACCATAAAGACGCCGAGGTATTTGCTTGTTATAAAGAGATGGGCGATCT
GCTTCAAATGAGAAATATTGATGACGTTAAACCTGAATTAAAGGGCGTCG
AAACAGAGCTGGTACAACTGAAAGGTCTTAAAGCCAGTCCTGGAGGTTTC
GATGAGCAGTTTGTTGAGCAAACAAAGGAATTCATTAATACCCAATCAAA
AGAGCTTCTACGGTTACGACAATTATGGTGTAGCCAGGTTGAGAATCTAT
CTTCTCAACTTAAGAAAATGTTTGGCGAGTTCCCGTCTTCAAATATGAAG
AATTTTATGGAGATTGTCAttaggtttttgaaaaaatacagaAGAATGGC
ACTTGAAGTTGAAGAGAAAGAACAATATATGCAAAAATGGAACaaagaaa
aagcaaacaaaggaCTTTGAATGTTAAAGCGATGGGAACCAAGACAatag
cgtagacaagaggggcgcaaaatttgcgACATTGTAATTGTCTATtgata
atataaaaatataattactgtgtcataaaaatctccTCTCCTACACAAAT
ATTGCGCCCTttttgtctacgctactgcatGACTGAATATTATTCAAGGA
TAACAGTTCTAAGATGTTTTTCAAAGTAATCGGCTACCACCTACATCGTC
TGGAAGAGTATGGAGACTTATCCCCTGAACTTTTCTTTGTAAATCCCCTT
ATACCGATTATCTCTGTAATAATTctttaaaatcatttcaaattcaattc
cgggttgataaaacaaatttcaaCCATCTTTTGGCTCATTATTCTAATTC
TCTTGCCTAGGGGGTTGTATTATTTATTAGTAATTGCggttaaaaaaaag
ttggtatacTCATAATTATACTCCCTCTTCTCTCACAGACCCattaggat
tttttcagctatTGGGG

Run BLAST on NCBI

transcript from alignment at sc0000079:86382..92344+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007692 ID=TCONS_00007692|Name=TCONS_00007692|organism=Clytia hemisphaerica|type=transcript|length=5963bp|location=Sequence derived from alignment at sc0000079:86382..92344+ (Clytia hemisphaerica)
AGTCCGACCAAAGTATTTGAAACAGGTGTGTTTTGTACTTTGTACTATGC
TTTTAGCTGGAGAACTACATTATGAGCAGTTTccaggatttttattttta
gtttgaaggtttttttttggtaaaaagttTGTCTGTTTGCTTACCCATCA
ATATTAAACTAAAGGTTATCTGTTTACTGAATTGCCACAAATCTTTGttg
gaaaaacgaaaaaaagccGTTTTGAATAAACCAATAAGGAAGTTTCTTGA
CTGATATGAAATACCATGTCTAATCTAAAACGGAAATTTTCTCTTGTTTA
CTTTAGCATGGATGTTGCCGATTTGGATTTAGAGGATGGACTCATGGTAA
CACCAAGCGAAGCCTACGAATTTACCGTTCATTTATACGGCCGCAGTGAT
AGCACATCAACAAAATGTGTCCTACAGATTCACTATCACGAAAAGACTTT
ATCGTTATTACGTCATGGACAAAAAGTTGAGAATTATTTGTTCAGCTCTT
TGAGAGATGTCGTCGGAGATGATGAAGTTCCGAGATTGAAAATACGATTC
GATGATTTCAATCAACTTGATATTGAGACTGGAACATTGGAGAAAAAGAA
TGAGATTTTTACATTATTAACACAAATCATTGATCAACAATATAGGTAGG
ATTATAGTTCTTGTATATATACTTTCTTTTATAAGGGTTAATCATATAGG
AANTACGGCCGTAGTAATAGCACATCAACAAAATGTGTCCTACAGATTCA
CTACCACGAAAAGACTTTATCGTTATTACGTCATGGACAAAAAGTTGAGA
ATTATTTGTTCAGCTCTTTGAGAGATGTCGTCGGAGATGATGAAGTTCCG
AGATTGAAAATACGATTTGATGATTTCAATCAACTTGATATTGAGACTGG
AACATTGGAGAAAAAGAATGAGATTTTTACATTATTAACACAAATCATTG
ATCAACAATATAGGTAGGATTATAGTTCTTGTATATATACTTTCTTTTAT
AAGGGTAAATCATATAGGAACAAGACAAGGGGCTGAATTTGAACTAACGA
CTAAGAAAAAATCGAAAGGAAGCGTccaatttcagaaattttcgaaATGC
ATTCTGAATATTGTaagcattttaagaacattataaaaaCACTAACAAAT
ATAAGAATAGCTCACCCTTAGTCATATTTACTGGTTCTTACGAAAAACGC
GTATTCCAATCTAATATAACATTTTGAATAACTTGAAACAGAATTGCGTA
CAttttagactagagtctacttctggctgaactttgtgAAGAACAGTGAA
GCAGACTAGAGGATTTCGCCATCTTAAAtcttttcactttcattttcaaa
aattatatgaaaacatcaaaacaataaaatgttttctaaaattccATCGa
agtttatgaaactataatgaaaaggagaaaatacctccaaaatttcaaaa
cattcgttTATTGGTCATGGTTTTCTGTTTGATCTTGTGGCATgtatttg
ctaccacctcaagcaaagcaaaaaaataaagtcGGCCAAATTACACCGGG
CTACTTATCAgtgccatccagtctatcaaaaagctataagttGCCCTAAT
AAGTTACTTATATAACTATAAGTTATTAGGGCTACGTACACTTCGGTATT
CCCATACTGCATTTTCCATACGATGTTCAGAAATATATTTCTGCATTTGC
AGCGACAAACTGATAATTTAAGACTTTTAAGCAAGTAAAATCATTTCCAT
AGATCTGAAGACTCAAAAGAGGATGCCGTCGACCCTAGGAGCCACACCAT
CAAAGAAGGGATCCTTGACAAGAATGGCCATGGTCTCTTCGCCTCCTTCA
TGTGGCAAGAAAGGTACGTCAAATTGTATCCTGGTCGGATGGATTACCAT
CGTGTCAAGGCAACCAATCATGAAGGTCCTGCTCTGAATCAGGTTCGACT
AACCTCCAATAAATGCTCTATTCGAGCAGTTGACGAGAATACTTTGATAC
TCGGCACACCGAATAGAGATTATATATTTCGAATGAGAAAGCATGCTCAC
GTCGACCCTCGGACTATGCTTAATGACTGGAGATTGGCTTTTGAGAGAGC
AATTCAAAAAGGTTCAAAAGAAGTCAGTTTGGTGGACAAACGAAGATTAC
AACACGAAAACAGATTACCCATCAATAGAGGTAAGTAATAGTTTCAATAT
TCGTTAGTCTCCTTAGTCCCCTTaggaaaaaaatcttaaaaaaactaaat
cCCCGTTAGcgcaattttcattcattacagCGGAGTCCAAATCGAAACAC
ACGGCGGGGAACCCAAATTTGAGCTAAGGACATTTCGAGATATGGAGTAA
GGTGAACAAGGCTTTGTTAACTAAAGGGACGAGAAGAgcttgttcgaatt
aaggaaatattcgagttatggaggttcgagttaaagagactccactgtat
atttTTGCCCCTCCACGTTGATAATTTCTCACACTAGAACCAGAGCAAGA
AGTCAAACTGGTTTTGATGATAATCCTTTTGATCTTACAGAGGAGGATGA
CATTCTCCTCCCTCACTTTCTCCCATCTCTTATTAAGTGATTTGCCTGAG
CTCGAATGGTTGACCAAAAAGTTTCATCCTTTGATAGACTCTGATTCGta
ttttattttagaatttataaaatataaaattttttaactAATTAAAACTT
TAAGGTAAGGAAGACGAAGTACCTCAACCATGTGAAGTCGGAAAGCCTTC
GCCAGCAAATGAAGaaacaaagtttgaaaatgCCCAGAATGCTGCTATTA
CGCAAGATGATAAATCTGAAGCTTCAGCCATTTCAGCTGGAAATCAACAA
ACAGCAAAGATAGAGAATGATTTTACAACCAACACAAAAGATGCCATTGG
ACAAGCTCTACTGTCGATAGCTACTGCCAAAGAACCAACTTCATCCCAAA
AGGCTCTTCAAAGCGATGTAACTCCATCACCAAAACAACCAATTCCTACA
TCTGAACCATCCACAACTGAAcccattcataaaaaatcaagcACAGAGAT
ATTGAAAGAGACACTACCTGAAGCGACCAAATCTGAACCACAAATCAGTG
CTTCAAAACCTGACGCCAGCACATCTAGAACGTCATCACAACCAACATCC
ATTGTACCTAAGCCGCCTCCTTCGCCCGGAATTGGATCTGCCCCACCACC
ACCTCCGCCTGGAAGTGGATCCgccccaccaccaccaccacctccaccac
cgcCGCCAGGATCATCGACAGCATCCATTGTTCACCTTCCACCGAAGAAA
GATATCATTCCAAatcgaaaaatgaaaactctTCCCTGGTCAAAAGTTTC
GGACGCTCAAATCAATACATCATTTTGGGGAAATGCCACAGACCGTACAA
ATCAAatcgattttcaaaaacttgaaaagtcaTTTTACTTGAAATCTTCA
GATACGGAGAAAAAGGGAGCTCAAGAGCATCACGAGTCGCCAAAAcaaga
gaaaaagaaatcattACTTGATCCTAAGAAAGCACAAACAATagggattt
tattaaaaaatccaGAATTGGAGcttgaaaatgtgaaaaaacgattGTCA
AAATTTGATGTAAAGAAAGACGGCTCGCTTGATGGTTTGACTTCTGAAGa
aattaaagcattaaaaatctGTGTGCCAACTGATGATGAAAGAAAATTGT
TCCATAATAAGAAAGGTATGGTGCAGTTAAAATTGATTATCTCAATAATC
TATAGTAACTTTTTCGCCCGGGGAGGGGTATTTGCTTTCAAAAACGACCT
TATGTTTGGCCCAATAAATTAGGTCTTTGAAATCTaatccttacagtgca
gagaacaTTTAGCCAATTTGAGCAAAATGGGTGAAAATCAACCCTTACgg
tccattttcttaaaaatacttGTCCATTTGAAGGCAAAATATTTTAACAT
ATTCCGAAATTTTTCTTCCCAAAAAACTTCGGTATGCTCATTTTTTACAC
CCAGTGAACCCAtacagtgcactttttaaaACAGACCCTTAAGAGtcgca
cgtacggtaggtcatttaccttaaGTGCCCCCAGGATTTTCCATAAGGGT
GCTGCATTATGTTAAATTCAGTGGTCATCTCAAAATTACTTTTAGTTACT
TTTTAGTTTCTTTTTCAATAGACATTTTCAGCGATGATTAAAAGTCTTGC
GTCCTTTTTTTACAGTTAGAACaacttttcagccaaattttagtttatga
aagtataatttttaataAGATTGCGAATTCATTTTTATGATTTCAGAGAA
TGAACTCGTCGATGTTGACAAGTTGGTGTTCGAGCTGACCACCATTGATC
CGATCGTTTTACAAGATATGTTGGCAAACTTGCTTATTATCCGTGAAATC
CCCGAGCAATTAAGAGGTATAAACTTGAAACTATTCATGATCTGAGGCCT
TGTTCGCACGAAACGATTCCGCTTCGCTTCGGAACGAAATGCAGCCATGt
tacttgaatgtaaccaatataATGATATTTTGTATCTGTATCGTTAAGTG
CGTCAAAGTACACTttcatttacacgttttttaaaaactatataagaaca
caaggcttcgatggccaagaCAATAAGtagaaattaaaaacattttatgg
ctttgtggattctaaaacaccaaatttttcagaaaaatatacaaaaaact
tacaaaatagtgaaaaataagaatattttaagaacatttttaaaagtttc
ttttgttttcttttaataCTTTTCCGGATACCCTGTCTAAACATGAAAAA
ACATATTGATTTCTTTTAGGTATTGAGCCACCAATCACAAATGTTATCAA
TGGTTATAAATGTTTACGAGATAGCaaagattttaagaaactcctCGAGT
ATATCTTATCCATTGGCAATTATATGAACGGTGGTACCAAAGAGGGATGT
GCTTATGGCTTTCGGCTAAGCGCGTTACTTAAACTAGCCGAAATCAAGAG
CGCAGATGAGAAAGAGTCGGTACTACAGTTCCTAGTTGAAGAGCTTTACC
ATAAAGACGCCGAGGTATTTGCTTGTTATAAAGAGATGGGCGATCTGCTT
CAAATGAGAAATATTGATGACGTTAAACCTGAATTAAAGGGCGTCGAAAC
AGAGCTGGTACAACTGAAAGGTCTTAAAGCCAGTCCTGGAGGTTTCGATG
AGCAGTTTGTTGAGCAAACAAAGGAATTCATTAATACCCAATCAAAAGAG
CTTCTACGGTTACGACAATTATGGTGTAGCCAGGTTGAGAATCTATCTTC
TCAACTTAAGAAAATGTTTGGCGAGTTCCCGTCTTCAAATATGAAGAATT
TTATGGAGATTGTCAttaggtttttgaaaaaatacagaAGAATGGCACTT
GAAGTTGAAGAGAAAGAACAATATATGCAAAAATGGAACaaagaaaaagc
aaacaaaggaCTTTGAATGTTAAAGCGATGGGAACCAAGACAatagcgta
gacaagaggggcgcaaaatttgcgACATTGTAATTGTCTATtgataatat
aaaaatataattactgtgtcataaaaatctccTCTCCTACACAAATATTG
CGCCCTttttgtctacgctactgcatGACTGAATATTATTCAAGGATAAC
AGTTCTAAGATGTTTTTCAAAGTAATCGGCTACCACCTACATCGTCTGGA
AGAGTATGGAGACTTATCCCCTGAACTTTTCTTTGTAAATCCCCTTATAC
CGATTATCTCTGTAATAATTctttaaaatcatttcaaattcaattccggg
ttgataaaacaaatttcaaCCATCTTTTGGCTCATTATTCTAATTCTCTT
GCCTAGGGGGTTGTATTATTTATTAGTAATTGCggttaaaaaaaagttgg
tatacTCATAATTATACTCCCTCTTCTCTCACAGACCCattaggattttt
tcagctatTGGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004360	XLOC_004360	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000079	supercontig	sc0000079:86382..92344 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.13191	0.0493651	0	0.172005	0	0.408283	0.943157	0.171755	8.54625e-05	0	1.05293e-09	2.34456	2.35253	2.00018	2.82344	0.679481	1.72597	3.22734	4.65518	0.483642	0.0674056	0.744794	0.301954	3.52328	1.80108	2.2951	1.69137	0.0171781	0.143221

Blast

[Close]

BLAST of TCONS_00007692 vs. Swiss-Prot (Human)
Match: DAAM1 (Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.593e-23
Identity = 96/369 (26.02%), Postives = 184/369 (49.86%), Query Frame = 3

Query: 1398 PNRKMKTLPWSKVSDAQINTSFWGNATDRT--NQIDFQKLEKSF--------YLKSSDTEKKGAQ---EHHESPKQEKKKSLLDPKKAQTIGILLKNPELELENVKKRLSKFDVKKDGSLDGLTSEEIKALKICVPTDDERKLF--HNKKENELVDVDKLVFELTTIDPIVLQDMLANLLIIREIPEQLRGIEPPITNVINGYKCLRDSKDFKKLLEYILSIGNYMNGGTKEGCAYGFRLSALLKLAEIKSA-DEKESVLQFLVEELYHKDAEVFACYKEMGDLLQM---------RNIDDVKPELKGVETELVQLKGLKASPGGFDEQFVEQTKEFINTQSKELLRLRQLWCSQVENLSSQLKKMFGE 2429
            P   +K+  WSK+ + ++  + W    D      +D + LE++F        +  +S++++K A    +   S  + K+ S++D ++AQ   ILL   +L  + +K+ +   D ++D     L  + ++ L   VP   +  L   H  + + +   D+ +FE++ I+    Q  L +L   ++  E++  ++P +  + +G + +  S   K+LLE +L+ GNYMN G + G AYGF++S+L K+A+ KS+ D+  ++L +L+  + +K   V    +E+ D+ Q          + I  ++  LK VETEL   K     PG   ++FV    +FI   S     +  L  ++ ++L ++  K FGE
Sbjct:  606 PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED-----LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINH--YQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPG---DKFVSVVSQFITVASFSFSDVEDL-LAEAKDLFTKAVKHFGE 962

The following BLAST results are available for this feature:

BLAST of TCONS_00007692 vs. Swiss-Prot (Human)

BLAST of TCONS_00007692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAAM1	4.593e-23	26.02	Disheveled-associated activator of morphogenesis 1...	[more]

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TCONS_00007692 (transcript) - C. hemisphaerica