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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007684 ID=TCONS_00007684|Name=TCONS_00007684|organism=Clytia hemisphaerica|type=transcript|length=978bp
TAGTCAATTCATTCCCAAGATAATACAACCTCTGCATCCTAATAAACCTA
TAAAAAGTGCGGAAATTTTATTTAATACAAAAAACATATTCAAAGACGAA
GACGAAGCAAAGTGCAAGCTTCTGAAGGTACAGCAGAAACATTTGTGTTA
AACAGCTTTAagatgaaaataataattttggtgattttgctATTAGCAAA
TGTCATTTCATTGGAGTCAAGATACATTAGCAACGATGCTTTGAtcaaaa
ttttgaaagatgttTTGAACTCCAATCCACcaaagtcgttcgtccaaggt
ggagacgcccaaggacccaagtcgttcgtccaaggtggagacgcccaagg
acccaagtcgttcgtccaaggtggagacgctcaaggacccaagtcgttcg
tccaagttGGAGACGctcaaggacccaagtcgttcgtccaaggtggagac
gctcatggacccaagtcgttcgtccaaggtggagtcgctcaaggacccaa
gtcgttcgtccaaggtggagacgctcaaggacccaagtcgttcgtccaag
gtggagacgctcaaggacccaagtcgttcgtccaaggtggagacgctcaa
ggacccaagtcgttcgtccaaggtggtgacgctcaaggacccaagtcgtt
tgTCCAAGGTGGTGACGCAAATTCAAAGAGAAACTGTATCACCACCCTTC
ATCAAACTCGAAGACAAATCCaagaaatttctcgaaaatgcTCTTATGTT
CCACGAAAACTTAATGCTGTTGAAGTTAAGTCACCTTGTAGTTTGCTCAA
ATTCGCACAACAAACTCTTAAAAAAATGATATTGATGTGCCGTTCAAGTG
ACGCTCAACAGCCTAAATCGTTTGTCCAAGGAGGTGATTCGAAAAAGTCT
TGTACCCAGTGTGGTGATAATAACGACAATGAAAAGCCCAAAGATATCAc
tataaatttgaatattttctagatattt Run BLAST on NCBI protein sequence of TCONS_00007684-protein >TCONS_00007684-protein ID=TCONS_00007684-protein|Name=TCONS_00007684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MKIIILVILLLANVISLESRYISNDALIKILKDVLNSNPPKSFVQGGDAQ
GPKSFVQGGDAQGPKSFVQGGDAQGPKSFVQVGDAQGPKSFVQGGDAHGP
KSFVQGGVAQGPKSFVQGGDAQGPKSFVQGGDAQGPKSFVQGGDAQGPKS
FVQGGDAQGPKSFVQGGDANSKRNCITTLHQTRRQIQEISRKCSYVPRKL
NAVEVKSPCSLLKFAQQTLKKMILMCRSSDAQQPKSFVQGGDSKKSCTQC
GDNNDNEKPKDITINLNIF Run BLAST on NCBI transcript from alignment at sc0000079:54179..56802+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007684 ID=TCONS_00007684|Name=TCONS_00007684|organism=Clytia hemisphaerica|type=transcript|length=2624bp|location=Sequence derived from alignment at sc0000079:54179..56802+ (Clytia hemisphaerica)
TAGTCAATTCATTCCCAAGATAATACAACCTCTGCATCCTAATAAACCTA
TAAAAAGTGCGGAAATTTTATTTAATACAAAAAACATATTCAAAGACGAA
GACGAAGCAAAGTGCAAGCTTCTGAAGGTACAGCAGAAACATTTGTGTTA
AACAGCTTTAagatgaaaataataattttggtgattttgctATTAGCAAA
TGTCATTTCATTGGAGTCAAGATACATTAGCAACGATGCTTTGAGTAAGT
TTTatttacatccctgtctcacagccccagtgaaaatttttcccaaagTT
GGGATAAAATATTCTATTGAAAACCCAAtgggaataaaaattttattgtt
ccaaggctaaaaaatagaccttttcgcctttgcgtccgccatattgaatt
gtatgcaaaaattatggttgccgaattgccgtggtgaaattcccttagaa
agtatgcaaaacaNNNGAATTTTTTAATGTCATGAAAACataatatgcaa
tgtctttaagaacaaattcctaaaaggcttttgttgttctgtaaatattt
ccttttggattaagaaattccatcttttattgttctaatgattataaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNccacggcaattcggcaaccataatttttgcatacaattcaatatgg
cggacgcaaaggcgaaaaggtctatccaGTGAGattggttttggagtgca
atttttaagcaTTGAATTTTGATCGGGGATGAAAGAAAAGTCAATTcccc
agtggggataaaattgtAGGGTTTtcttcccaccggggacgagatTTTAG
CCGACTTTTCCAGTGGGGTTTGGTTCCCAAACCCCTTTCCCACCGACCCA
CTGGTACTGGTACAAAAgtggccaaaatatcatccccagTGGAAACCCTG
GAAAATGTACTCTACGTTTTGTCCCCCCTGGAAATAATCACATAAGTAAA
TCCAacttactgtgaaatattgcgttttttTCCAACCCATacgaattttc
tgacttgaaaacaacgGAACTCAACCCCCAGTCatgaaaaaacatgggaa
tataaATCTTCATCGAGTTTCTACCcactaccgtaacttggtctaatgtc
gacatccctcatttAATTCCGACACCTTTTTCATCAGctaaaatttatag
aaaggtcgaaaagctatttttctttgcgTAGTGGTCAGGGGAggaataat
attttttcaatcagtgattcaaacttTCATGTTATTACTGTCTTagaagg
gtgttggaattagacgagggatgttgacattagaccaacttacggtatcc
cgcctggctgataaaatcctaTAGGTCTGTGAGAGCGGGGGGTTATTTTA
GTTCATGATTCTAATTTATGTGAAACTTCTTTTGTTCTGGTCAAACCCTA
TGCATGATTTGTCTGCCGACTTGTTATTATTATTCTTTAGTGTATTCAAA
ATTTCTGACCAAAGGTTCCCATGACCTTTTCAGTGGCCAttagaaaatcc
caaaaatgctATTATCTCGTTTGACAATCGATAAGAAAAGAAAACTGAAT
CtccgatttgaaaacttttcaaatatgGTCTTAAACTTACATTTAGGACC
AGAgatgaaaaatcttttaattttaagAATGTATAATTCTCGACAATAAG
cattaaatgattttaaaatccatcctttttattatttcagtcaaaatttt
gaaagatgttTTGAACTCCAATCCACcaaagtcgttcgtccaaggtggag
acgcccaaggacccaagtcgttcgtccaaggtggagacgcccaaggaccc
aagtcgttcgtccaaggtggagacgctcaaggacccaagtcgttcgtcca
agttGGAGACGctcaaggacccaagtcgttcgtccaaggtggagacgctc
atggacccaagtcgttcgtccaaggtggagtcgctcaaggacccaagtcg
ttcgtccaaggtggagacgctcaaggacccaagtcgttcgtccaaggtgg
agacgctcaaggacccaagtcgttcgtccaaggtggagacgctcaaggac
ccaagtcgttcgtccaaggtggtgacgctcaaggacccaagtcgtttgTC
CAAGGTGGTGACGCAAATTCAAAGAGAAACTGTATCACCACCCTTCATCA
AACTCGAAGACAAATCCaagaaatttctcgaaaatgcTCTTATGTTCCAC
GAAAACTTAATGCTGTTGAAGTTAAGTCACCTTGTAGTTTGCTCAAATTC
GCACAACAAACTCTTAAAAAAATGATATTGATGTGCCGTTCAAGTGACGC
TCAACAGCCTAAATCGTTTGTCCAAGGAGGTGATTCGAAAAAGTCTTGTA
CCCAGTGTGGTGATAATAACGACAATGAAAAGCCCAAAGATATCActata
aatttgaatattttctagatattt Coding sequence (CDS) from alignment at sc0000079:54179..56802+ >TCONS_00007684 ID=TCONS_00007684|Name=TCONS_00007684|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000079:54179..56802+ (Clytia hemisphaerica)
atgaaaataataattttggtgattttgctATTAGCAAATGTCATTTCATT
GGAGTCAAGATACATTAGCAACGATGCTTTGAtcaaaattttgaaagatg
ttTTGAACTCCAATCCACcaaagtcgttcgtccaaggtggagacgcccaa
ggacccaagtcgttcgtccaaggtggagacgcccaaggacccaagtcgtt
cgtccaaggtggagacgctcaaggacccaagtcgttcgtccaagttGGAG
ACGctcaaggacccaagtcgttcgtccaaggtggagacgctcatggaccc
aagtcgttcgtccaaggtggagtcgctcaaggacccaagtcgttcgtcca
aggtggagacgctcaaggacccaagtcgttcgtccaaggtggagacgctc
aaggacccaagtcgttcgtccaaggtggagacgctcaaggacccaagtcg
ttcgtccaaggtggtgacgctcaaggacccaagtcgtttgTCCAAGGTGG
TGACGCAAATTCAAAGAGAAACTGTATCACCACCCTTCATCAAACTCGAA
GACAAATCCaagaaatttctcgaaaatgcTCTTATGTTCCACGAAAACTT
AATGCTGTTGAAGTTAAGTCACCTTGTAGTTTGCTCAAATTCGCACAACA
AACTCTTAAAAAAATGATATTGATGTGCCGTTCAAGTGACGCTCAACAGC
CTAAATCGTTTGTCCAAGGAGGTGATTCGAAAAAGTCTTGTACCCAGTGT
GGTGATAATAACGACAATGAAAAGCCCAAAGATATCActataaatttgaa
tattttctagatgaaaataataattttggtgattttgctATTAGCAAATG
TCATTTCATTGGAGTCAAGATACATTAGCAACGATGCTTTGAtcaaaatt
ttgaaagatgttTTGAACTCCAATCCACcaaagtcgttcgtccaaggtgg
agacgcccaaggacccaagtcgttcgtccaaggtggagacgcccaaggac
ccaagtcgttcgtccaaggtggagacgctcaaggacccaagtcgttcgtc
caagttGGAGACGctcaaggacccaagtcgttcgtccaaggtggagacgc
tcatggacccaagtcgttcgtccaaggtggagtcgctcaaggacccaagt
cgttcgtccaaggtggagacgctcaaggacccaagtcgttcgtccaaggt
ggagacgctcaaggacccaagtcgttcgtccaaggtggagacgctcaagg
acccaagtcgttcgtccaaggtggtgacgctcaaggacccaagtcgtttg
TCCAAGGTGGTGACGCAAATTCAAAGAGAAACTGTATCACCACCCTTCAT
CAAACTCGAAGACAAATCCaagaaatttctcgaaaatgcTCTTATGTTCC
ACGAAAACTTAATGCTGTTGAAGTTAAGTCACCTTGTAGTTTGCTCAAAT
TCGCACAACAAACTCTTAAAAAAATGATATTGATGTGCCGTTCAAGTGAC
GCTCAACAGCCTAAATCGTTTGTCCAAGGAGGTGATTCGAAAAAGTCTTG
TACCCAGTGTGGTGATAATAACGACAATGAAAAGCCCAAAGATATCActa
taaatttgaatattttctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007684-exon-sc0000079-1491911889:54179..54422 | TCONS_00007684-exon-sc0000079-1491911889:54179..54422 | Clytia hemisphaerica | exon |
| TCONS_00007684-exon-sc0000079-1510915933:54179..54422 | TCONS_00007684-exon-sc0000079-1510915933:54179..54422 | Clytia hemisphaerica | exon |
| TCONS_00007684-exon-sc0000079-1575043694:54179..54422 | TCONS_00007684-exon-sc0000079-1575043694:54179..54422 | Clytia hemisphaerica | exon |
| TCONS_00007684-exon-sc0000079-1491911889:56069..56802 | TCONS_00007684-exon-sc0000079-1491911889:56069..56802 | Clytia hemisphaerica | exon |
| TCONS_00007684-exon-sc0000079-1510915933:56069..56802 | TCONS_00007684-exon-sc0000079-1510915933:56069..56802 | Clytia hemisphaerica | exon |
| TCONS_00007684-exon-sc0000079-1575043694:56069..56802 | TCONS_00007684-exon-sc0000079-1575043694:56069..56802 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:54179..56802 + |
Blast
The following BLAST results are available for this feature:
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