TCONS_00007659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007659
Unique NameTCONS_00007659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007659 ID=TCONS_00007659|Name=TCONS_00007659|organism=Clytia hemisphaerica|type=transcript|length=198bp
TTGAGTACTGCTTTGTTATGCCCATCGATGATGGCTTTCATGTTGGTCGT
GCAGCTATAGCTAACTTTGACTGTATTTCGATATAACAGCTTGTGGTATT
TATGATGACGAGGAAAGTGTTTGTCGATCAACTTCAAGAACTTTTGTGCG
ATATTTGTTTCGACCGATTTGCTGAAGGGAGGGTTAAACCAAATGACA
Run BLAST on NCBI

transcript from alignment at sc0000078:276777..276974

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007659 ID=TCONS_00007659|Name=TCONS_00007659|organism=Clytia hemisphaerica|type=transcript|length=198bp|location=Sequence derived from alignment at sc0000078:276777..276974 (Clytia hemisphaerica)
TGTCATTTGGTTTAACCCTCCCTTCAGCAAATCGGTCGAAACAAATATCG
CACAAAAGTTCTTGAAGTTGATCGACAAACACTTTCCTCGTCATCATAAA
TACCACAAGCTGTTATATCGAAATACAGTCAAAGTTAGCTATAGCTGCAC
GACCAACATGAAAGCCATCATCGATGGGCATAACAAAGCAGTACTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004332XLOC_004332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007659-exon-sc0000078-1491911889:276777..276974TCONS_00007659-exon-sc0000078-1491911889:276777..276974Clytia hemisphaericaexon
TCONS_00007659-exon-sc0000078-1510915933:276777..276974TCONS_00007659-exon-sc0000078-1510915933:276777..276974Clytia hemisphaericaexon
TCONS_00007659-exon-sc0000078-1575043694:276777..276974TCONS_00007659-exon-sc0000078-1575043694:276777..276974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:276777..276974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	11.5098	12.2387	8.30842	11.3528	0.142169	2.51832	0	4.28794	8.0343	7.33156	3.12929	3.06437	3.96049	9.28339	3.52985	2.02297	0	0	0	0	20.3273	17.9003	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top