TCONS_00007638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007638
Unique NameTCONS_00007638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007638 ID=TCONS_00007638|Name=TCONS_00007638|organism=Clytia hemisphaerica|type=transcript|length=686bp
TATTATTGTTGTAATTTTAGACaaatttatattaaaaaatggcaaatGAA
CAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGATGAATCTTT
GACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCCTGTCACTG
ATATCAGAGAGAAGGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTTG
ATGGTAGCTTACACTGCAAATTCTCTTTTTTGGACATATCTCATTACACA
AGGAATTGATCCAAAAACACACCCAATTAAAGATGAACTGcTAAGAATCA
AACAATACATGGGGAAAATCAAATTGGCTGAAGAAAAGAAAACTATGGCA
AGGGTTGATACAAGTGCGGCAAAGAGATTTGTTAGAAATGCACTTTGGAC
TCCTAGCTCTGAAGATACTAACTCTACTGAAAAATCTAACACCGATCCAG
CTCCAGAGTACAAACAGACGAACAGAAAAGACAAGAAAGATAAGAAGAGG
AAAAATGAAGATCGAAATGAAAAGGAGACAAACAATAAAgataagaagaa
gaagaaaaagaaaaagaaggaatGATATCAAAAATGTATATCATTTTAAA
TTGACAGATTGGGACTGTATGTGCAGGAGAAATAAAATCGTTATTAGTAG
TCGTGGATTCGACTCAAATCTCATTGTAATTTGTAT
Run BLAST on NCBI

protein sequence of TCONS_00007638-protein

>TCONS_00007638-protein ID=TCONS_00007638-protein|Name=TCONS_00007638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MANEQLPSSINKKFEELDESLTDLQTSLKAFLKIPVTDIREKVKDPLENA
KLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEEK
KTMARVDTSAAKRFVRNALWTPSSEDTNSTEKSNTDPAPEYKQTNRKDKK
DKKRKNEDRNEKETNNKDKKKKKKKKKE
Run BLAST on NCBI

transcript from alignment at sc0000078:721789..723798-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007638 ID=TCONS_00007638|Name=TCONS_00007638|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000078:721789..723798- (Clytia hemisphaerica)
TATTATTGTTGTAATTTTAGACAAATTTATATTAAAAAATGGCAAATGAA
CAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGATGAATCTTT
GACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCCTGTCACTG
ATATCAGAGAGAAGGTAATACAAAGTACCACTATTTGAGATAAAAGGCTA
TGTGATTGAGCTGCCTCTATGCAGGGCTTGAAATAACGGTCAGCAAACAT
TGTCCGACCAAAATTGCTCCTTGTCCAACCCAAAAATCATAATTGTCAAG
CTAAAGCAACCCTGATTGGACATTTTGTCCGACCCACTTGAAATCATTAT
TTCGAGCCTTGTCTATGGGTGCTATTAAATGGTGCATGGGTATAGCAGCC
TTCCTAGTTTCCTAAAGCTGGTATCTAGTCACAAAATGAGCATAGAGTAA
TGTACCTAAGGCTGTGGAATGGCCTTTCTAATTTTTGTTCTGTATTATTA
TGTAAAAAAAAAGAAATGAGTTTGGAGTAAATATGTTATACACAACAGCT
TATCAAATAACAAGCTCTTGAATATTAAATGTATTGCTTTTAATGTTTCA
GGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTTGATGGTAGCTTACA
CTGCAAATTCTCTTTTTTGGAGTATGTATTAGAAACATTGAAAACCTTGC
AAATCCATAGGCACCCTTTTATTAATATTATTTTTATTATTTAACTAAAA
ACATTTGAATCGTTCAATCATAACAGGCTACATTAAGCTCCCCTGATCTC
CCTCTTTTTGGAATTTTAATACTCAACATGCTATTTACTTCTTCAGCATA
TCTCATTACACAAGGAATTGATCCAAAAACACACCCAATTAAAGATGAAC
TGGTAAGACGATACATTCGATCTTTATTGGACCAAAAATCTCTCTTTCAA
ATTTTAGAAAGATTCAAATTACAGAGAGTAATTCAAACCACTCAGCTGAG
GGGACCAATATTTCAGTTCGAATCTCAGAAAGATTTGAATAATAGAGGTT
CGAATTAGAGTGAGTTGACTGTAAATCTGGCTGGAAATCTTTCACTCTTG
GAAACTCAATTGATGTAATTTCTACAGGATTCTAATTAAATTGCAACTTT
TAAACATTTTCAGCTAAGAATCAAACAATACATGGGGAAAATCAAATTGG
CTGAAGAAAAGAAAACTAGTATTATTTTTATAGCCTTTGTTATCTTCTTC
TAGTTCTACACTTTAACCTCCCATCAGAGGACTAAACTAAATCAATCGTT
TATACTTGTTACTGATAATTTCCCCACTGGTTAAGTTTAGCTGTGATCTC
TTACATGAACCAAAACTGGGTTGAAAAAAATGGTGATAAATATGGTAGTG
ATAAAGTTTTTATAGCTGTTAAAGCCTTTTGAAGAATTTTCATGAATTTT
TGTGGACTTGTTTAGCTTTAGATTGTATACAGATCTTCAATGATCAATCA
ATCTTTTGATTAAATTTTTTAGTGGCAAGGGTTGATACAAGTGCGGCAAA
GAGATTTGTTAGAAATGCACTTTGGACTCCTAGCTCTGGTAAGTTAACTT
CAGTTGGTTGTAACAATGTTTTTTTCTTCAAGTTAATGGATTGTTGTTGT
TAATCAGTGTTTAAGATTAAGATTGCCAAGCAAAGATTTTCATACTCTGA
CTTAAAAACCTTTTTTCTGTCCAATTTTTTCACAGAAGATACTAACTCTA
CTGAAAAATCTAACACCGATCCAGCTCCAGAGTACAAACAGACGAACAGA
AAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAGGA
GACAAACAATAAAGATAAGAAGAAGAAGAAAAAGAAAAAGAAGGAATGAT
ATCAAAAATGTATATCATTTTAAATTGACAGATTGGGACTGTATGTGCAG
GAGAAATAAAATCGTTATTAGTAGTCGTGGATTCGACTCAAATCTCATTG
TAATTTGTAT

Coding sequence (CDS) from alignment at sc0000078:721789..723798-

>TCONS_00007638 ID=TCONS_00007638|Name=TCONS_00007638|organism=Clytia hemisphaerica|type=CDS|length=3222bp|location=Sequence derived from alignment at sc0000078:721789..723798- (Clytia hemisphaerica)
AAGATACTAACTCTACTGAAAAATCTAACACCGATCCAGCTCCAGAGTAC
AAACAGACGAACAGAAAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGA
TCGAAATGAAAAGGAGACAAACAATAAAGATAAGAAGAAGAAGAAAAAGA
AAAAGAAGGAATGATGGCAAGGGTTGATACAAGTGCGGCAAAGAGATTTG
TTAGAAATGCACTTTGGACTCCTAGCTCTGCTAAGAATCAAACAATACAT
GGGGAAAATCAAATTGGCTGAAGAAAAGAAAACTACATATCTCATTACAC
AAGGAATTGATCCAAAAACACACCCAATTAAAGATGAACTGGTAAAAGAT
CCTTTGGAAAATGCCAAACTTGACTTGATGGTAGCTTACACTGCAAATTC
TCTTTTTTGGAATGGCAAATGAACAATTACCAAGCTCAATCAATAAAAAG
TTTGAAGAGCTGGATGAATCTTTGACTGATCTTCAAACTTCACTCAAAGC
ATTCCTGAAAATTCCTGTCACTGATATCAGAGAGAAGAAGATACTAACTC
TACTGAAAAATCTAACACCGATCCAGCTCCAGAGTACAAACAGACGAACA
GAAAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAG
GAGACAAACAATAAAGATAAGAAGAAGAAGAAAAAGAAAAAGAAGGAATG
ATGGCAAGGGTTGATACAAGTGCGGCAAAGAGATTTGTTAGAAATGCACT
TTGGACTCCTAGCTCTGCTAAGAATCAAACAATACATGGGGAAAATCAAA
TTGGCTGAAGAAAAGAAAACTACATATCTCATTACACAAGGAATTGATCC
AAAAACACACCCAATTAAAGATGAACTGGTAAAAGATCCTTTGGAAAATG
CCAAACTTGACTTGATGGTAGCTTACACTGCAAATTCTCTTTTTTGGAAT
GGCAAATGAACAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGG
ATGAATCTTTGACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATT
CCTGTCACTGATATCAGAGAGAAGAAGATACTAACTCTACTGAAAAATCT
AACACCGATCCAGCTCCAGAGTACAAACAGACGAACAGAAAAGACAAGAA
AGATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAGGAGACAAACAATA
AAGATAAGAAGAAGAAGAAAAAGAAAAAGAAGGAATGATGGCAAGGGTTG
ATACAAGTGCGGCAAAGAGATTTGTTAGAAATGCACTTTGGACTCCTAGC
TCTGCTAAGAATCAAACAATACATGGGGAAAATCAAATTGGCTGAAGAAA
AGAAAACTACATATCTCATTACACAAGGAATTGATCCAAAAACACACCCA
ATTAAAGATGAACTGGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTT
GATGGTAGCTTACACTGCAAATTCTCTTTTTTGGAATGGCAAATGAACAA
TTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGATGAATCTTTGAC
TGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCCTGTCACTGATA
TCAGAGAGAAGAAGATACTAACTCTACTGAAAAATCTAACACCGATCCAG
CTCCAGAGTACAAACAGACGAACAGAAAAGACAAGAAAGATAAGAAGAGG
AAAAATGAAGATCGAAATGAAAAGGAGACAAACAATAAAGATAAGAAGAA
GAAGAAAAAGAAAAAGAAGGAATGATGGCAAGGGTTGATACAAGTGCGGC
AAAGAGATTTGTTAGAAATGCACTTTGGACTCCTAGCTCTGCTAAGAATC
AAACAATACATGGGGAAAATCAAATTGGCTGAAGAAAAGAAAACTACATA
TCTCATTACACAAGGAATTGATCCAAAAACACACCCAATTAAAGATGAAC
TGGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTTGATGGTAGCTTAC
ACTGCAAATTCTCTTTTTTGGAATGGCAAATGAACAATTACCAAGCTCAA
TCAATAAAAAGTTTGAAGAGCTGGATGAATCTTTGACTGATCTTCAAACT
TCACTCAAAGCATTCCTGAAAATTCCTGTCACTGATATCAGAGAGAAGAA
GATACTAACTCTACTGAAAAATCTAACACCGATCCAGCTCCAGAGTACAA
ACAGACGAACAGAAAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGATC
GAAATGAAAAGGAGACAAACAATAAAGATAAGAAGAAGAAGAAAAAGAAA
AAGAAGGAATGATGGCAAGGGTTGATACAAGTGCGGCAAAGAGATTTGTT
AGAAATGCACTTTGGACTCCTAGCTCTGCTAAGAATCAAACAATACATGG
GGAAAATCAAATTGGCTGAAGAAAAGAAAACTACATATCTCATTACACAA
GGAATTGATCCAAAAACACACCCAATTAAAGATGAACTGGTAAAAGATCC
TTTGGAAAATGCCAAACTTGACTTGATGGTAGCTTACACTGCAAATTCTC
TTTTTTGGAATGGCAAATGAACAATTACCAAGCTCAATCAATAAAAAGTT
TGAAGAGCTGGATGAATCTTTGACTGATCTTCAAACTTCACTCAAAGCAT
TCCTGAAAATTCCTGTCACTGATATCAGAGAGAAGAAGATACTAACTCTA
CTGAAAAATCTAACACCGATCCAGCTCCAGAGTACAAACAGACGAACAGA
AAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAGGA
GACAAACAATAAAGATAAGAAGAAGAAGAAAAAGAAAAAGAAGGAATGAT
GGCAAGGGTTGATACAAGTGCGGCAAAGAGATTTGTTAGAAATGCACTTT
GGACTCCTAGCTCTGCTAAGAATCAAACAATACATGGGGAAAATCAAATT
GGCTGAAGAAAAGAAAACTACATATCTCATTACACAAGGAATTGATCCAA
AAACACACCCAATTAAAGATGAACTGGTAAAAGATCCTTTGGAAAATGCC
AAACTTGACTTGATGGTAGCTTACACTGCAAATTCTCTTTTTTGGAATGG
CAAATGAACAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGAT
GAATCTTTGACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCC
TGTCACTGATATCAGAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004312XLOC_004312Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007638-proteinTCONS_00007638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007638-exon-sc0000078-1575043694:723635..723798TCONS_00007638-exon-sc0000078-1575043694:723635..723798Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1575043694:723128..723197TCONS_00007638-exon-sc0000078-1575043694:723128..723197Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1575043694:722897..722952TCONS_00007638-exon-sc0000078-1575043694:722897..722952Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1575043694:722581..722635TCONS_00007638-exon-sc0000078-1575043694:722581..722635Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1575043694:722211..722276TCONS_00007638-exon-sc0000078-1575043694:722211..722276Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1575043694:721789..722063TCONS_00007638-exon-sc0000078-1575043694:721789..722063Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:723635..723798TCONS_00007638-exon-sc0000078-1510915933:723635..723798Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:723128..723197TCONS_00007638-exon-sc0000078-1510915933:723128..723197Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:722897..722952TCONS_00007638-exon-sc0000078-1510915933:722897..722952Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:722581..722635TCONS_00007638-exon-sc0000078-1510915933:722581..722635Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:722211..722276TCONS_00007638-exon-sc0000078-1510915933:722211..722276Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1510915933:721789..722063TCONS_00007638-exon-sc0000078-1510915933:721789..722063Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:723635..723798TCONS_00007638-exon-sc0000078-1491911889:723635..723798Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:723128..723197TCONS_00007638-exon-sc0000078-1491911889:723128..723197Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:722897..722952TCONS_00007638-exon-sc0000078-1491911889:722897..722952Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:722581..722635TCONS_00007638-exon-sc0000078-1491911889:722581..722635Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:722211..722276TCONS_00007638-exon-sc0000078-1491911889:722211..722276Clytia hemisphaericaexon
TCONS_00007638-exon-sc0000078-1491911889:721789..722063TCONS_00007638-exon-sc0000078-1491911889:721789..722063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:721789..723798 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.44	127.7	93.6451	60.8057	71.1086	52.5687	47.9072	43.3099	42.4835	30.9761	33.6077	26.4112	23.9007	19.6386	24.1165	24.8611	21.8692	32.6774	16.6825	15.9617	26.3861	27.636	83.4701	73.2847	33.2996	20.7903	17.0316	9.31649	35.6857	28.9315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
Blast
[Close]
BLAST of TCONS_00007638 vs. Swiss-Prot (Human)
Match: C1D (Nuclear nucleic acid-binding protein C1D OS=Homo sapiens GN=C1D PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.274e-32
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3 
Query:   45 NEQLPSSINKKFEELDESLTDLQTSLKAFLKIPVTDIREKVKDPLENAKLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEEKKTMARVDTSAAKRFVRNALWTPSSEDTN 422
            NE  P  I++     + S+  +   LK  + +   ++ +K+ DPLE AK+DL+ AYT NS+FW YL TQG++PK HP+K EL RI+ YM ++K   +KK   ++D  AA RFV+NALW P S++ +
Sbjct:    7 NEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKL-DPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNAS 131
The following BLAST results are available for this feature:
BLAST of TCONS_00007638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1D2.274e-3242.86Nuclear nucleic acid-binding protein C1D OS=Homo s... [more]
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