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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007621 ID=TCONS_00007621|Name=TCONS_00007621|organism=Clytia hemisphaerica|type=transcript|length=552bp
TACTcggcaaaatttcatctttcgTATATTCGCCAGAAACTGTTGGATAT
CCGTCTAAACGCCATTTACCAAAACCACCATCTAAGATGGAAATGTTGTC
ATGTCCAAATGCACGAAACATCCACCACACCCTTGGCGACGAATATGCAC
CAACTTTTTCATTATCATCATAAACGACCACGTGGTGTTGGTTCGAAATC
CCTAAATTGCTGACATATGCAGAAAAATTTGCTGATGTTGGTAACATTCG
ATCAAAAGGTGTGTCTAAATCACGACATTCATCAAAAGAGAAGAACTTTG
AAGCTGGGATACGATTCCCGAGATGCATTGCACGATAATCACGATCATCT
AGATCCCATCGTGCATCCAAAACCCTCAATTTTTTATGCCATTCTTTATT
TTGTAATTTCTCATGCAGTTCTTCACAACTTGTTAAAGCTGATGTTTGTC
CAGTGTGCACAGAGCTGTAACATCGTTGCCGAGTGTACACCAAGCCTCTT
TTGATAACATCATGGAAAAAAGTGACTTTGAAGATTTGCATTTTAACTAC
TG Run BLAST on NCBI transcript from alignment at sc0000078:518431..521309- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007621 ID=TCONS_00007621|Name=TCONS_00007621|organism=Clytia hemisphaerica|type=transcript|length=2879bp|location=Sequence derived from alignment at sc0000078:518431..521309- (Clytia hemisphaerica)
TACTCGGCAAAATTTCATCTTTCGTATATTCGCCAGAAACTGTTGGATAT
CCGTCTAAACGCCATTTACCAAAACCACCATCTAAGATGGAAATGTTGTC
ATGTCCAAATGCACGAAACATCCACCACACCCTTGGCGACGAATATGCAC
CAACTTTTTCATTATCATCATAAACGACCACGTGGTGTTGGTTCGAAATC
CCTAAATTGCTGACATATGCAGAAAAATTTGCTGATGTTGGTAACATTCG
ATCAAAAGGTGTGTCTAAATCACGACATTCATCAAAAGAGAAGAACTTTG
AAGCTGGGATACGATTCCCGAGATGCATTGCACGATAATCACGATCATCT
AGATCCCATCGTGCATCCAAAACCCTCAATTTTTTATGCCATTCTTTATT
TTGTAATTTCTCATGCAGTTCTTCACAACTTGTTAAAGCTGATGTTTGTC
CAGTGTGCACAGAGCTGTAACATCGTTGCCGAGTGTACACCAAGCTTCTT
TTGATGAATGTTACCAAATATCTTTTCGTTGGTATCATTCTTTTTCTTTT
GTTTATTTTTTATTTTTCTAAAAATAATAAAATAAATACAAGTTTGAGTT
GAAAGATGTAAGACAGTCAATATATTTTCCTTGTGAATTGTATGAAAAGC
TCTTAAAGAGTTTGAATTTTATTTTTTGTAGAATGTGTTTTCGGAAAAAG
GAAAAAAAAAAACGTATTTCATTTAACTATTCCTGTCTCTTACGATATAT
TTTCCAGTGTGTAAACTACATGTGAAATTTTAGAAAATAAAAATTTAGAA
AAAAAAAACAAATCGATTACCCCATACTATAATAGATTCGGTACAAAAGT
AAAAATATAGAAAGTTATAAAAATATATATCCATGCAATGGTATCTCATA
TATTCTCCAGAGCAAACGACCGGAACACTTAGTCCAAAAGACTATACATT
ACAAAATCCGCCATGTCTAAGACCCTTAAAGTCCCTTCCCCGTGAACGTG
TAATGATTTCCCCCATTTCATCAAAAGCAAAAAGTTTGACGAACACAAAA
TTCCCTTTACTGTGTTAGACAATCGAAAATTGATTGGTTGGAATCAATCA
CGTGATACAAGTTCAGGAGCTCGTTCCAACCATTCAGCAAACGAGCCATC
GTAAACAGGAATTTCTTTCCCTCTTGCTTGAAACAGAGCATGCGCAGCTA
AAGCAGCTGTCACTCCAATCTGGCATGTTGAAATAATATCTGAATCAATA
TCCACTTTGCTGGACCGGAAAAATTCAACTAAATCCTCTTTGCTTTTCAT
TGTTTTATCTTTGTTGAAAAAATCAGTGAAAGGGGTCATCTTGGCTCCTG
GAATATGTCCGGCAGAGAATTCGTCGAGAAGACGGGTGTCAACTAGTTGT
GTCGGATTTTCAGATTCGACGTCTCTTTTCATCTGTTCAAAAGTGACGTA
ATGTTTTGGTTCTTGAATTGCTTTGAAAGGTTGGTCTGGTGCTAAAACGA
AAAAAGAGCCATCACATTGCAGTCACCTGGAAAATGATCAGTGTAATTAG
CTGACATCTGTATTAGCAGCTGTTTTTTACTGTGGTCTAAGGTAGCTGTT
TAGGAAAAATAGAGCAGCTTCTTCTATGTACAATCACTGCCGTAATATCT
GGCACTAAAGGCAATCCCCTTTAGTGCCAAAGTGCCAAAGTGTACTCCGA
GTGAATTTTGAGTGTTTTATAAAGTACAGTTTAAAAGTATAGTTATACTT
GAGACTCGAGATCTAAAAGCTTAAAAACGTTCCAATAAGGATGAGAATAT
AAATATAGCCAGGAAAGTGGCTACCACTCTTCCCCACCCGAATAGAAAAA
TTCAATGAAACAAAGAAGTACTGAAATGCTAATTCTCGCCCGGCTTTAAA
TTCTGAAAATTGTTAAAATACCCAAAATTGTAAATATATTTCGACGGTGA
TTGCGGTGCTGTGTAAGAGAATGTTGAAACGAAACTTACACGCCAAATCT
TCTTCCATCGTGTAATCACCAGAAACTGTTGGATATCCGTCTACACGCCA
TTTACCAAAACCACCATCTAAGATGGAAATGTTTTCATGTCCAAATGCAC
GAAACATCCACCACACTCTTGGTGAGAAGAAAGCACCCAGTGAATCATCG
TCATCGTAAACGATCACGTGGTGTTGATTGGAGATTCCCAGACTGGTGAC
GTAAGCAGAGAAGTCACGTGATGTAGGCATCATGATTGGATAATTGGAAG
TTTTATCAGAACTTTCAGTGAACGAGAAAAACTTGGAACCTGTATAAATA
AAAAGCAAGGAAATTACATTCACGTTTTGTTGAGCCTCTTTTGACCAAAA
ATTAAACAGTTTACGAAAGGCTTCATTCCTGTTCCGTTTGAAGCATAAGG
CCGCTGATATCAAGTATGAGATAATATCAGTTTTCGCTAACATCATCACC
GTATAGAATGCAAACAAACTTTTCATTATAATATGAAAATGCCGCAAAAT
TTTGGGATAGCTTTAGAAATAATACAACCATTCTAAAACAAATTAGAGAG
AGCTTTTGAATTGATTTTTCACAAACCTTGAATCCTATTCTTCATGTGCA
TAGCTTGGTAATCCAAAGGTTCAACGTTACACCGTGCATCCAAAATCCTC
AATTTTTTATNGTAATCCAAAGGTTCCACGTTACACCGTGCATCCAAAAT
CCTCAATTTTTTATGCCATTCTTTATTTTGTAATTTCTCATGCAGTTCTT
CACAACTTGTTAAAGCTGATGTTTGTCCATTGTGCACAGAGCTGTAACAT
CGTTGCCGAGTGTACACCAAGCCTCTTTTGATAACATCATGGAAAAAAGT
GACTTTGAAGATTTGCATTTTAACTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007621-exon-sc0000078-1575043694:520839..521309 | TCONS_00007621-exon-sc0000078-1575043694:520839..521309 | Clytia hemisphaerica | exon |
| TCONS_00007621-exon-sc0000078-1575043694:518431..518511 | TCONS_00007621-exon-sc0000078-1575043694:518431..518511 | Clytia hemisphaerica | exon |
| TCONS_00007621-exon-sc0000078-1510915933:520839..521309 | TCONS_00007621-exon-sc0000078-1510915933:520839..521309 | Clytia hemisphaerica | exon |
| TCONS_00007621-exon-sc0000078-1510915933:518431..518511 | TCONS_00007621-exon-sc0000078-1510915933:518431..518511 | Clytia hemisphaerica | exon |
| TCONS_00007621-exon-sc0000078-1491911889:520839..521309 | TCONS_00007621-exon-sc0000078-1491911889:520839..521309 | Clytia hemisphaerica | exon |
| TCONS_00007621-exon-sc0000078-1491911889:518431..518511 | TCONS_00007621-exon-sc0000078-1491911889:518431..518511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:518431..521309 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001763 | Rhodanese-like_dom |
Blast
BLAST of TCONS_00007621 vs. Swiss-Prot (Human)
Match: THTR (Thiosulfate sulfurtransferase OS=Homo sapiens GN=TST PE=1 SV=4) HSP 1 Score: 134.806 bits (338), Expect = 5.017e-38 Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = -3
Query: 35 VHTGQTSALTSCEELHEKLQNKEWHKKLRVLDARW-DLDDRDYRAMHLGNRIPASKFFSFDECRDLDTPFDRMLPTSANFSAYVSNLGISNQHHVVVYDDNEKVGAYSSPRVWWMFRAFGHDNISILDGGFGKWRLDGYPTVS 460
VH AL S + L E ++ + LRVLDA W R+ R +L +P + FF +ECRD +P++ MLP+ A F+ YV LGISN HVVVY D E +G++ +PRVWWMFR FGH +S+L+GGF W +G+P S
Sbjct: 2 VHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVY-DGEHLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS 143
The following BLAST results are available for this feature:
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