TCONS_00007619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007619
Unique NameTCONS_00007619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007619 ID=TCONS_00007619|Name=TCONS_00007619|organism=Clytia hemisphaerica|type=transcript|length=1731bp
CCTTGAAGTATTTGGCAAACTtgagtttacaagtgtcatttagtttttgc
gggctgatagaatggcaggGTCCTGGATGGCTTCACTAACTGACTTTGTA
TTGGCATAacaagaaaagaacaaaataaatatgaaaattaaaaataatga
tcattttatttttcaataaccTGAAAGAAGCTACAGTATTTTATTGTGaa
gttttctttattaaaatatttgataGAGACAGTGTTCAGTCTTTCTCAAA
TGAAAAGAGCCTGCTGCTCATCCTCTAGTGAAAAGAATTTCTTATAGAGG
CTGTATAATACTTGTTAGTTTCCTTTTCCCAAAAAGTATAGCATTTCTCA
TCACAAATATATTGCTGATTGAATATGTTTTGGTCAACACGATCCAGGTA
AATCAATGAATCTGGAAGATGTAAAACGATTTACTTGTGACTTGATTGAG
TCAAAAAAAGACAATCTTAAGAATCTAAGCTATGAAATATGGAATAATCC
AGAGACAGCCTTTGAGGAGTTTAAGTGTCATGAAATAATAAcactttttc
ttgaaaaatctggTTTTCATGTGCAAAAGAAACATCCTTTAACTACATCG
TTCATAGCTGAATCAATAATTGGTAAGAGTGGACCGGTTGTTGGCATTTG
TTGTGAATATGATGCACTGCCTGGAATAGGACATGGTTGTGGTCACAATT
TGATCGCAGAATGTGCAGTTGGCGCTGGATTAGCTGTAAAAGAAGCAATC
CGGAAGTATGGACTTCCTGGAAAAGTTATCATTTTCGGAACTCCAGCTGA
AGAAGCTGGAGGAGGAAAAGTGGAGATGTTGAAAGCGCAAGTTTTTGAGG
GATGTGATGTCTGTATTATGGCTCATCCAGCACTATATGATTTGCCAGAT
CCCATAATGGTTGCTGTCTCACAGtttaaaatagctttcaaaGGAAAACC
AGCTCATGCTGCAGCTGCTCCATGGGAAGGGCAAAATGCTTTAGATGCTG
CCGTACAATGTTATTGTAACATCAGCATGCTTCGACAACAAATCAAACCC
ACATCTCGTGTTCATGCTATTATTTCTAAGGGAGGAACTGTTCCAAACAT
AATACCGGAGCTGGCAGAGCTTTTCATTTTTGTGCGTTCGGTAACTGATA
AAGAAATGTGGGACCTGAAAGAAAGAGTCGTGTCATGTGGAAATGGTGCT
GCAACCTCTACAGGCTGTACATTAGAGATCACAGAAGTTGCGGAATACAA
CGCTTTAAAAACTAATGAAACATTGATGAATCTATTTATAAAGAATTCTG
AAAATTTAGGTGTAGATTTCAACTACACAGGTTCAAAACAAGGTGGTTCC
ACTGACATGGGGAATGTTTCAGTAGCATTACCTTCAATTCATCCAAAATT
TAAAGTTGACTCAAAAACGAATATCCACACAGCTGGTTTTACAGATGCTG
CTATTCTTGATGAAAACCAAATACCTACGCTTAGGGTTGCTAAAAGTCTA
GCTATGACTGCCATCGATGTTCTTGCATCAGATTCACATATAttagaaca
aattaaaaaagattttattgatGAGGATAAATGAATGAATTATTTTAACA
ACAATTAACGCACCATACCTGAATCTCGGCTTTGTCTACTTTTTCTcttg
ttttgtgttttttgtttgttttaatattttgccCATTATAATAATCAGCT
GATATTGTTTGTGGTTTTTATTCGTTTGCGA
Run BLAST on NCBI

protein sequence of TCONS_00007619-protein

>TCONS_00007619-protein ID=TCONS_00007619-protein|Name=TCONS_00007619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MNLEDVKRFTCDLIESKKDNLKNLSYEIWNNPETAFEEFKCHEIITLFLE
KSGFHVQKKHPLTTSFIAESIIGKSGPVVGICCEYDALPGIGHGCGHNLI
AECAVGAGLAVKEAIRKYGLPGKVIIFGTPAEEAGGGKVEMLKAQVFEGC
DVCIMAHPALYDLPDPIMVAVSQFKIAFKGKPAHAAAAPWEGQNALDAAV
QCYCNISMLRQQIKPTSRVHAIISKGGTVPNIIPELAELFIFVRSVTDKE
MWDLKERVVSCGNGAATSTGCTLEITEVAEYNALKTNETLMNLFIKNSEN
LGVDFNYTGSKQGGSTDMGNVSVALPSIHPKFKVDSKTNIHTAGFTDAAI
LDENQIPTLRVAKSLAMTAIDVLASDSHILEQIKKDFIDEDK
Run BLAST on NCBI

transcript from alignment at sc0000078:469454..472780-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007619 ID=TCONS_00007619|Name=TCONS_00007619|organism=Clytia hemisphaerica|type=transcript|length=3327bp|location=Sequence derived from alignment at sc0000078:469454..472780- (Clytia hemisphaerica)
CCTTGAAGTATTTGGCAAACTTGAGTTTACAAGTGTCATTTAGTTTTTGC
GGGCTGATAGAATGGCAGGGTCCTGGATGGCTTCACTAACTGACTTTGTA
TTGGCATAACAAGAAAAGAACAAAATAAATATGAAAATTAAAAATAATGA
TCATTTTATTTTTCAATAACCTGAAAGAAGCTACAGTATTTTATTGTGAA
GTTTTCTTTATTAAAATATTTGATAGAGACAGTGTTCAGTCTTTCTCAAA
TGAAAAGAGCCTGCTGCTCATCCTCTAGTGAAAAGAATTTCTTATAGAGG
CTGTATAATACTTGTTAGTTTCCTTTTCCCAAAAAGTATAGCATTTCTCA
TCACAAATATATTGCTGATTGAATATGTTTTGGTCAACACGATCCAGGTA
AATCAATGAATCTGGAAGATGTAAAACGATTTACTTGTGACTTGATTGAG
TCAAAAAAAGACAATCTTAAGAATCTAAGCTATGAAATATGGAATAATCC
AGAGACAGCCTTTGAGGAGTTTAAGTGTCATGAAATAATAACACTTTTTC
TTGAAAAATCTGGTTTTCATGTGCAAAAGAAACATCCTTTAACTACATCG
TTCATAGCTGAATCAATAATTGGTAAGAGTGGACCGGTTGTTGGCATTTG
TTGTGAATATGATGCACTGCCTGGAATAGGACATGGTTGTGGTCACAATT
TGATCGCAGAATGTGCAGTTGGCGCTGGATTAGGTGAGGAGTTATGTTTT
TTGATCATTTAAAGTCAGATTTAGTGTGTAATTGTCGAATGATATGGCTT
TGCCAGGGGAAGGTTTCACTTGGCAAGTGAAATGCCATGTATGGGAATTG
AACCTTGGTCACCTATACAGGAATTGTTTGATAACCCCTATACCACAGCA
GCTACATGTTAATAAAAGTTAAAATGGTTGAAATAAGAAATATCTTTTCT
CAATGTACCTAAATTTCTGTCATGTTTATAGCTCTCAAAGTATTTCTATG
AATGATGATAAATGTATGAGATTTTGTTGAGTTGTTGTCTAAAAATTTGT
GTTTAGTCTACTATTTGCTTAAATTAAACTAAAGAACAATAAGAAAAAAA
CAACATTTTTTGTAGCTGTAAAAGAAGCAATCCGGAAGTATGGACTTCCT
GGAAAAGTTATCATTTTCGGAACTCCAGCTGAAGAAGCTGGAGGAGGAAA
AGTGGAGATGTTGAAAGCGCAAGTTTTTGAGGGATGTGATGTCTGTATTA
TGGCTCATCCAGCACTATATGATTTGCCAGATCCCATAATGGTTGCTGTC
TCACAGTTTAAAATAGCTTTCAAAGGTTTGAAATGCTAAATTAGATTTTG
ATCTATCTGGGGTTGCCTGCACTAGATATTATTTTCTGTTTTTTTTTTAA
TGGTCGGTAAATCCAAACAACGGTGCAAAAAGAGTTAGCTTTCTTAGCAC
AATTTGCTTATGCTATGTTTTCATTCTAAATGATACCATCATCATTCAAT
TCTTTGAAATGCTTACATTTTCTATCATTACTAATTTGACCCTATTTTAA
ATTAGCATCAAATATTTCAAAATATTGATTTTACTCACAGGAAAACCAGC
TCATGCTGCAGCTGCTCCATGGGAAGGGCAAAATGCTTTAGATGCTGCCG
TACAATGTTATTGTAACATCAGCATGCTTCGACAACAAATCAAACCCACA
TCTCGTGTTCATGCTATTATTTCTAAGGGAGGAACTGTTCCAAACATAAT
ACCGGAGCTGGCAGAGCTTTTCATTTTTGTGCGTTCGGTAACTGATAAAG
AAATGTGGGACCTGAAAGAAAGAGTCGTGTCATGTGGAAATGGTGCTGCA
ACCTCTACAGGTCAGTCATAAAAAAAATTTACAACTTTTCTGGTTTTTCC
TTATGCACATTTTGAAGATATTCTCTGGTGTCTACCCTGAAGCTACAAAT
TAATTTTAAGTACACTGTATGCACCCCAAAATGTTGGTGAACCCCAAAAT
GTAGATTTTTGGTTTGACGTCCACTAAAATTTATTCAGTGTGTTTACAGC
CGGAAAACTTTGGAAATGGATAGCCTATGAGTATATAAATATATCTAAAT
CAAATTCATCGCTTATTTTGATAATTTTATTACGAAACCAGAGATGTTTT
TCCAAAGTGACGTCTGACTTTTCAATCAAATTTTCAATCAATTGAGAATT
GGTACACCGAGACTAAAAGATAAGTTCCACAAACTAGGGTCGATTTTTAA
GCCCTGTCTATCCTGAACATGGTGTCAAAATTTTATGTCGGTAGCTGAAA
CCCTAATAAAAGAATTTTGAAGCAAATCTTGACAAAACTGACGTAAAGAT
ACATTTTGATGTAATTTTTCTGCTTTTTCCTGAAAACACACAAAAGTACA
CCTATATTTTGGGATGCAGTAGAAAAGAAATTTAGATTTTTAACAACTTT
CTGGATCATCTCCCTTATTTTTAAAATTTCAGTCGATTCTATATCGTATT
AGGTCTTATCATACAAGAAATCAACAAGATTTGTAGATTTCACCTGAAGC
TATACAGAAAAAGGCTCACCTACATTTGGGGTGCAGTAACTTTAAAAAAT
GAAAGTTCGGGCTTGAATAATTTTTATCCAAAATTGTTTAAAATGGAATT
ATGCACTAGGAAAGATTCTTTAGGTGACAAATCAATGCCATTTTTCATTT
GGCTCATTTTTGTATTCCAAATGATTATTTGAGGCGTCAGAAAACAAAAT
TAATCAATGTTTTGGGGTGCAGATAGCGTAAACTATTATTTGTTTTTCTT
TCCATTTAGGCTGTACATTAGAGATCACAGAAGTTGCGGAATACAACGCT
TTAAAAACTAATGAAACATTGATGAATCTATTTATAAAGAATTCTGAAAA
TTTAGGTGTAGATTTCAACTACACAGGTTCAAAACAAGGTGGTTCCACTG
ACATGGGGAATGTTTCAGTAGCATTACCTTCAATTCATCCAAAATTTAAA
GTTGACTCAAAAACGAATATCCACACAGCTGGTTTTACAGATGCTGCTAT
TCTTGATGAAAACCAAATACCTACGCTTAGGGTTGCTAAAAGTCTAGCTA
TGACTGCCATCGATGTTCTTGCATCAGATTCACATATATTAGAACAAATT
AAAAAAGATTTTATTGATGAGGATAAATGAATGAATTATTTTAACAACAA
TTAACGCACCATACCTGAATCTCGGCTTTGTCTACTTTTTCTCTTGTTTT
GTGTTTTTTGTTTGTTTTAATATTTTGCCCATTATAATAATCAGCTGATA
TTGTTTGTGGTTTTTATTCGTTTGCGA

Coding sequence (CDS) from alignment at sc0000078:469454..472780-

>TCONS_00007619 ID=TCONS_00007619|Name=TCONS_00007619|organism=Clytia hemisphaerica|type=CDS|length=4716bp|location=Sequence derived from alignment at sc0000078:469454..472780- (Clytia hemisphaerica)
GCTGTACATTAGAGATCACAGAAGTTGCGGAATACAACGCTTTAAAAACT
AATGAAACATTGATGAATCTATTTATAAAGAATTCTGAAAATTTAGGTGT
AGATTTCAACTACACAGGTTCAAAACAAGGTGGTTCCACTGACATGGGGA
ATGTTTCAGTAGCATTACCTTCAATTCATCCAAAATTTAAAGTTGACTCA
AAAACGAATATCCACACAGCTGGTTTTACAGATGCTGCTATTCTTGATGA
AAACCAAATACCTACGCTTAGGGTTGCTAAAAGTCTAGCTATGACTGCCA
TCGATGTTCTTGCATCAGATTCACATATATTAGAACAAATTAAAAAAGAT
TTTATTGATGAGGATAAATGAGAAAACCAGCTCATGCTGCAGCTGCTCCA
TGGGAAGGGCAAAATGCTTTAGATGCTGCCGTACAATGTTATTGTAACAT
CAGCATGCTTCGACAACAAATCAAACCCACATCTCGTGTTCATGCTATTA
TTTCTAAGGGAGGAACTGTTCCAAACATAATACCGGAGCTGGCAGAGCTT
TTCATTTTTGTGCGTTCGGTAACTGATAAAGAAATGTGGGACCTGAAAGA
AAGAGTCGTGTCATGTGGAAATGGTGCTGCAACCTCTACAGCTGTAAAAG
AAGCAATCCGGAAGTATGGACTTCCTGGAAAAGTTATCATTTTCGGAACT
CCAGCTGAAGAAGCTGGAGGAGGAAAAGTGGAGATGTTGAAAGCGCAAGT
TTTTGAGGGATGTGATGTCTGTATTATGGCTCATCCAGCACTATATGATT
TGCCAGATCCCATAATGGTTGCTGTCTCACAGTTTAAAATAGCTTTCAAA
GATGAATCTGGAAGATGTAAAACGATTTACTTGTGACTTGATTGAGTCAA
AAAAAGACAATCTTAAGAATCTAAGCTATGAAATATGGAATAATCCAGAG
ACAGCCTTTGAGGAGTTTAAGTGTCATGAAATAATAACACTTTTTCTTGA
AAAATCTGGTTTTCATGTGCAAAAGAAACATCCTTTAACTACATCGTTCA
TAGCTGAATCAATAATTGGTAAGAGTGGACCGGTTGTTGGCATTTGTTGT
GAATATGATGCACTGCCTGGAATAGGACATGGTTGTGGTCACAATTTGAT
CGCAGAATGTGCAGTTGGCGCTGGATTAGGCTGTACATTAGAGATCACAG
AAGTTGCGGAATACAACGCTTTAAAAACTAATGAAACATTGATGAATCTA
TTTATAAAGAATTCTGAAAATTTAGGTGTAGATTTCAACTACACAGGTTC
AAAACAAGGTGGTTCCACTGACATGGGGAATGTTTCAGTAGCATTACCTT
CAATTCATCCAAAATTTAAAGTTGACTCAAAAACGAATATCCACACAGCT
GGTTTTACAGATGCTGCTATTCTTGATGAAAACCAAATACCTACGCTTAG
GGTTGCTAAAAGTCTAGCTATGACTGCCATCGATGTTCTTGCATCAGATT
CACATATATTAGAACAAATTAAAAAAGATTTTATTGATGAGGATAAATGA
GAAAACCAGCTCATGCTGCAGCTGCTCCATGGGAAGGGCAAAATGCTTTA
GATGCTGCCGTACAATGTTATTGTAACATCAGCATGCTTCGACAACAAAT
CAAACCCACATCTCGTGTTCATGCTATTATTTCTAAGGGAGGAACTGTTC
CAAACATAATACCGGAGCTGGCAGAGCTTTTCATTTTTGTGCGTTCGGTA
ACTGATAAAGAAATGTGGGACCTGAAAGAAAGAGTCGTGTCATGTGGAAA
TGGTGCTGCAACCTCTACAGCTGTAAAAGAAGCAATCCGGAAGTATGGAC
TTCCTGGAAAAGTTATCATTTTCGGAACTCCAGCTGAAGAAGCTGGAGGA
GGAAAAGTGGAGATGTTGAAAGCGCAAGTTTTTGAGGGATGTGATGTCTG
TATTATGGCTCATCCAGCACTATATGATTTGCCAGATCCCATAATGGTTG
CTGTCTCACAGTTTAAAATAGCTTTCAAAGATGAATCTGGAAGATGTAAA
ACGATTTACTTGTGACTTGATTGAGTCAAAAAAAGACAATCTTAAGAATC
TAAGCTATGAAATATGGAATAATCCAGAGACAGCCTTTGAGGAGTTTAAG
TGTCATGAAATAATAACACTTTTTCTTGAAAAATCTGGTTTTCATGTGCA
AAAGAAACATCCTTTAACTACATCGTTCATAGCTGAATCAATAATTGGTA
AGAGTGGACCGGTTGTTGGCATTTGTTGTGAATATGATGCACTGCCTGGA
ATAGGACATGGTTGTGGTCACAATTTGATCGCAGAATGTGCAGTTGGCGC
TGGATTAGGCTGTACATTAGAGATCACAGAAGTTGCGGAATACAACGCTT
TAAAAACTAATGAAACATTGATGAATCTATTTATAAAGAATTCTGAAAAT
TTAGGTGTAGATTTCAACTACACAGGTTCAAAACAAGGTGGTTCCACTGA
CATGGGGAATGTTTCAGTAGCATTACCTTCAATTCATCCAAAATTTAAAG
TTGACTCAAAAACGAATATCCACACAGCTGGTTTTACAGATGCTGCTATT
CTTGATGAAAACCAAATACCTACGCTTAGGGTTGCTAAAAGTCTAGCTAT
GACTGCCATCGATGTTCTTGCATCAGATTCACATATATTAGAACAAATTA
AAAAAGATTTTATTGATGAGGATAAATGAGAAAACCAGCTCATGCTGCAG
CTGCTCCATGGGAAGGGCAAAATGCTTTAGATGCTGCCGTACAATGTTAT
TGTAACATCAGCATGCTTCGACAACAAATCAAACCCACATCTCGTGTTCA
TGCTATTATTTCTAAGGGAGGAACTGTTCCAAACATAATACCGGAGCTGG
CAGAGCTTTTCATTTTTGTGCGTTCGGTAACTGATAAAGAAATGTGGGAC
CTGAAAGAAAGAGTCGTGTCATGTGGAAATGGTGCTGCAACCTCTACAGC
TGTAAAAGAAGCAATCCGGAAGTATGGACTTCCTGGAAAAGTTATCATTT
TCGGAACTCCAGCTGAAGAAGCTGGAGGAGGAAAAGTGGAGATGTTGAAA
GCGCAAGTTTTTGAGGGATGTGATGTCTGTATTATGGCTCATCCAGCACT
ATATGATTTGCCAGATCCCATAATGGTTGCTGTCTCACAGTTTAAAATAG
CTTTCAAAGATGAATCTGGAAGATGTAAAACGATTTACTTGTGACTTGAT
TGAGTCAAAAAAAGACAATCTTAAGAATCTAAGCTATGAAATATGGAATA
ATCCAGAGACAGCCTTTGAGGAGTTTAAGTGTCATGAAATAATAACACTT
TTTCTTGAAAAATCTGGTTTTCATGTGCAAAAGAAACATCCTTTAACTAC
ATCGTTCATAGCTGAATCAATAATTGGTAAGAGTGGACCGGTTGTTGGCA
TTTGTTGTGAATATGATGCACTGCCTGGAATAGGACATGGTTGTGGTCAC
AATTTGATCGCAGAATGTGCAGTTGGCGCTGGATTAGGCTGTACATTAGA
GATCACAGAAGTTGCGGAATACAACGCTTTAAAAACTAATGAAACATTGA
TGAATCTATTTATAAAGAATTCTGAAAATTTAGGTGTAGATTTCAACTAC
ACAGGTTCAAAACAAGGTGGTTCCACTGACATGGGGAATGTTTCAGTAGC
ATTACCTTCAATTCATCCAAAATTTAAAGTTGACTCAAAAACGAATATCC
ACACAGCTGGTTTTACAGATGCTGCTATTCTTGATGAAAACCAAATACCT
ACGCTTAGGGTTGCTAAAAGTCTAGCTATGACTGCCATCGATGTTCTTGC
ATCAGATTCACATATATTAGAACAAATTAAAAAAGATTTTATTGATGAGG
ATAAATGAGAAAACCAGCTCATGCTGCAGCTGCTCCATGGGAAGGGCAAA
ATGCTTTAGATGCTGCCGTACAATGTTATTGTAACATCAGCATGCTTCGA
CAACAAATCAAACCCACATCTCGTGTTCATGCTATTATTTCTAAGGGAGG
AACTGTTCCAAACATAATACCGGAGCTGGCAGAGCTTTTCATTTTTGTGC
GTTCGGTAACTGATAAAGAAATGTGGGACCTGAAAGAAAGAGTCGTGTCA
TGTGGAAATGGTGCTGCAACCTCTACAGCTGTAAAAGAAGCAATCCGGAA
GTATGGACTTCCTGGAAAAGTTATCATTTTCGGAACTCCAGCTGAAGAAG
CTGGAGGAGGAAAAGTGGAGATGTTGAAAGCGCAAGTTTTTGAGGGATGT
GATGTCTGTATTATGGCTCATCCAGCACTATATGATTTGCCAGATCCCAT
AATGGTTGCTGTCTCACAGTTTAAAATAGCTTTCAAAGATGAATCTGGAA
GATGTAAAACGATTTACTTGTGACTTGATTGAGTCAAAAAAAGACAATCT
TAAGAATCTAAGCTATGAAATATGGAATAATCCAGAGACAGCCTTTGAGG
AGTTTAAGTGTCATGAAATAATAACACTTTTTCTTGAAAAATCTGGTTTT
CATGTGCAAAAGAAACATCCTTTAACTACATCGTTCATAGCTGAATCAAT
AATTGGTAAGAGTGGACCGGTTGTTGGCATTTGTTGTGAATATGATGCAC
TGCCTGGAATAGGACATGGTTGTGGTCACAATTTGATCGCAGAATGTGCA
GTTGGCGCTGGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004302XLOC_004302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007619-exon-sc0000078-1575043694:472048..472780TCONS_00007619-exon-sc0000078-1575043694:472048..472780Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1575043694:471456..471665TCONS_00007619-exon-sc0000078-1575043694:471456..471665Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1575043694:470921..471190TCONS_00007619-exon-sc0000078-1575043694:470921..471190Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1575043694:469454..469971TCONS_00007619-exon-sc0000078-1575043694:469454..469971Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1510915933:472048..472780TCONS_00007619-exon-sc0000078-1510915933:472048..472780Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1510915933:471456..471665TCONS_00007619-exon-sc0000078-1510915933:471456..471665Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1510915933:470921..471190TCONS_00007619-exon-sc0000078-1510915933:470921..471190Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1510915933:469454..469971TCONS_00007619-exon-sc0000078-1510915933:469454..469971Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1491911889:472048..472780TCONS_00007619-exon-sc0000078-1491911889:472048..472780Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1491911889:471456..471665TCONS_00007619-exon-sc0000078-1491911889:471456..471665Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1491911889:470921..471190TCONS_00007619-exon-sc0000078-1491911889:470921..471190Clytia hemisphaericaexon
TCONS_00007619-exon-sc0000078-1491911889:469454..469971TCONS_00007619-exon-sc0000078-1491911889:469454..469971Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007619-proteinTCONS_00007619-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:469454..472780 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.289	14.0477	23.1464	26.0019	9.99626	7.37753	6.77291	7.96798	3.1625	3.52797	4.41621	2.84095	3.87568	4.10543	4.10321	5.42609	2.7298	3.90996	1.95754	1.89285	2.25374	2.11065	5.50571	5.75874	4.45478	4.1098	1.63009	1.53501	3.51862	3.74308
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017144Pept_M20A_amidohydro_pred
IPR002933Peptidase_M20
IPR011650Peptidase_M20_dimer
IPR017439Amidohydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00007619 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 3.019e-89
Identity = 175/413 (42.37%), Postives = 243/413 (58.84%), Query Frame = 1 
Query:  397 GKSMNLEDVKRFTCDLIESKKDNLKNLSYEIWNNPETAFEEFKCHEIITLFLEK----SGFHVQKKHPLTTSFIAE-------SIIGKSGPV-VGICCEYDALPGIGHGCGHNLIAECAVGAGLAVK---EAIRKYGLPGKVIIFGTPAEEAGGGKVEMLKAQVFEGCDVCIMAHPALYD---LPDPIMVAVSQFKIAFKGKPXXXXXXPWEGQNALDAAVQCYCNISMLRQQIKPTSRVHAIISKGGTVPNIIPELAELFIFVRSVTDKEMWDLKERVVSCGNGAATSTGCTLEITEVAE--YNALKTNETLMNLFIKNSENLGVDF---NYTGSKQGGSTDMGNVSVALPSIHPKFKVDSKTNIHTAGFTDAAILDENQIPTLRVAKSLAMTAIDVLASDSHILEQIKKDF 1566
            G+S  LE +K  + + I+   + L  LS  IW+ PE A+EE   H ++T F E+    + + VQ  + L T+F AE       +      P+ +G  CEYDALPGIGH CGHNLIAE    A L V+   E + +   P KV++ GTPAEE GGGK+++++A  F   DV  MAHP+  +   LPD   +A     + + GK +H+A+ PWEG NALDAAV  Y N+S+ RQQ+KPT RVH II  GG  PNIIP  +EL  + R+ + KE+  L ++   C   AA ++GCT+EI   A   YN L  N++L   +++N   LG++F   +   +   GSTD GNVS  +P IHP F + S    HT  +T+AA   E Q  TLR AK+LAMTA+DV+     +LE I++DF
Sbjct:   16 GRS-ELELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPD---MAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVL-PNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPE-LLEGIREDF 422
The following BLAST results are available for this feature:
BLAST of TCONS_00007619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D23.019e-8942.37Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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