|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007614 ID=TCONS_00007614|Name=TCONS_00007614|organism=Clytia hemisphaerica|type=transcript|length=2366bpRun BLAST on NCBI protein sequence of TCONS_00007614-protein >TCONS_00007614-protein ID=TCONS_00007614-protein|Name=TCONS_00007614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=724bp MSSALHLYHQNATLLNNCFSLRCLQFSSLILNISQKHRYCTIPSANSNPLRun BLAST on NCBI transcript from alignment at sc0000078:419705..462301- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007614 ID=TCONS_00007614|Name=TCONS_00007614|organism=Clytia hemisphaerica|type=transcript|length=42597bp|location=Sequence derived from alignment at sc0000078:419705..462301- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:419705..462301- >TCONS_00007614 ID=TCONS_00007614|Name=TCONS_00007614|organism=Clytia hemisphaerica|type=CDS|length=39150bp|location=Sequence derived from alignment at sc0000078:419705..462301- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007614 vs. Swiss-Prot (Human)
Match: THOP1 (Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 4.493e-71 Identity = 181/677 (26.74%), Postives = 328/677 (48.45%), Query Frame = 2
Query: 326 EVSGEAINEALPYIISETEKEHDSFDEILKTKDDVSWDDVVPKSEKIFDSLTLAWNAVSHLHGVKNNAQLREAYQKVQPDLVRLGSKASQSQSMYKALKILDGK--KSEYDEAQNRIIESSIRSAELSGVHLEGSLKEEFNQITQQLAELGTKFQNNVLDSTKAFSYMVDDEKDLEGLPSSVKTLMATNAGQHLNKTVNPEEGPWRLSLDMPCFDPFMKYSLNSSLRQMMYTSYISRASSCDHDNSPNIEQIRQLRKRKSQILGFKNFAELSTSKKMSKTPEAVWKMIKELASKAKPVAKEE----LETLQSFANSQG--FEGDLKHWDIAFWSEKQKEHTLSLNEERLREYFPLPRVLEGLFSLSQEIFGIKITEVAPNPTWHEDVKFFDIQNS-QGEHIASFYLDLYSRPHEKQGGAWMG--HAIDRNDALGRKPVAYLVCNQSPPIGEDPSLMTFRESITLFHEFGHGLQHMLTTVKYQAAAGINNIEYDAVELPSQFMENWLYDWNTLQKVTSHYKTGEKLPQDFFKQIVKGKLYNSGIATMRQLYFGALDMELHTSD--DPWQEVMQRISKDYTLMTPLPVDSFPCSFLHIFXXXXXXXXXXXKWAEVLSADAF-AAFEEVGLNDRQKVAQLGERFRDTVLSLGGGRHPEQVFIDFRGRKPDVSALLKSHGL 2314
++S + I E +I +T++ +D + +DVS++ + + + T+ N + V + +R A + L + S + +Y+ + L K K R +E I+ +G+HL +E +I ++L+ L F N+ + T + + ++L GLP LN E+G +++L P + P +K R+ + ++ R C +N ++++ LR +KS++LGF A+ M+KT + V + ELA K KP+ ++E LE ++ +G F+G ++ WD+ ++ + +E +++ L+EYFP+ V GL + QE+ G+ WHEDV+ + +++ GE + FYLDLY R + A G R D + +A +V N + P + PSL+ E T FHEFGH + + + ++ +G ++E D VE PSQ +ENW+++ L +++ HY+TG +P++ +++++ + N+G+ +RQ+ +D LHT DP +E R+ ++ + P + P +F H+ + GY A YY Y W+EV S D F F++ G+ + +++G +R +L GG + F GR P A L S GL
Sbjct: 27 DLSAQQIEERTRELIEQTKRVYDQVG--TQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDTTFLPFTL---QELGGLPEDF-----------LNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNCR---CKEENCAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSG-THVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADPAEEYA-RLCQEILGVPATPGTNMPATFGHL-AGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLN----SKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFLLSKGL 677 The following BLAST results are available for this feature:
BLAST of TCONS_00007614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.