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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007612 ID=TCONS_00007612|Name=TCONS_00007612|organism=Clytia hemisphaerica|type=transcript|length=3578bpRun BLAST on NCBI protein sequence of TCONS_00007612-protein >TCONS_00007612-protein ID=TCONS_00007612-protein|Name=TCONS_00007612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp MKWYHSYETLELNTPSRLDGVDFEEEARYRKEGARFIMDIGNKLGLPYITRun BLAST on NCBI transcript from alignment at sc0000078:393241..407087- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007612 ID=TCONS_00007612|Name=TCONS_00007612|organism=Clytia hemisphaerica|type=transcript|length=13847bp|location=Sequence derived from alignment at sc0000078:393241..407087- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:393241..407087- >TCONS_00007612 ID=TCONS_00007612|Name=TCONS_00007612|organism=Clytia hemisphaerica|type=CDS|length=20520bp|location=Sequence derived from alignment at sc0000078:393241..407087- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007612 vs. Swiss-Prot (Human)
Match: CCNK (Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2) HSP 1 Score: 281.952 bits (720), Expect = 4.064e-82 Identity = 131/241 (54.36%), Postives = 175/241 (72.61%), Query Frame = 1
Query: 34 TKMKWYHSYETLELNTPSRLDGVDFEEEARYRKEGARFIMDIGNKLGLPYITMASGIVFYHRFYMFHSFKEFSRWVTATTCLFLAGKVEETPKKCRDIIKMTHQSLPEYRFKAFGDNPTEEIMVIERILLQTIKFDLHLNHPYTYLIKFGKLLKGDMEKINGFVQKAWIFINDSLSTTLCLRYKPQVIGLAVLLLSFKLSNQNIRDFMGKPR-TDWWKIFYPEAKEPDLEDICEELTNMYS 753
TK WY + L +TPS+L+G+D EARYR+EGARFI D+G +LGL Y T+A+GI+++HRFYMFHSFK+F R+VT CLFLAGKVEETPKKC+DIIK L + +F FGD+P EE+MV+ERILLQTIKFDL + HPY +L+K+ K LKGD KI VQ AW F+NDSL TTL L+++P++I +AV+ L+ +L I+++ KP WW+ F + LEDIC ++ ++YS
Sbjct: 20 TKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 259 The following BLAST results are available for this feature:
BLAST of TCONS_00007612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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