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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007611 ID=TCONS_00007611|Name=TCONS_00007611|organism=Clytia hemisphaerica|type=transcript|length=1441bp
CTCAAGCTGGTCAGAATTTCTCGTCGATGTTCGAAAAATTTTGCATCTTT
TTGTGGTTGTTAATCGCACTAAAGTGGTAACAAGATAAGATCGTTTTGAA
ACGTATTAAGATAGGAGATCGCCATTACAATGGAGTGCAATTAATGATGG
AGGGTGCTCCGATTTAATTAGCGGCAATAAAAATGACATTTAATAATAAA
AGAGAACTAAACAGCGTGAcgaattttgatcatttttgcaaagaaaaaaa
gataagtTGTGTTTTTATATGTAACGGCAAGATGGAATaaaaatcaagat
ggctgaAAATATGAGATGAATTTGCTTGTAAAGGCTTGGTACGTCAATTA
GCATGcCGGGCCTTTTTGGAATCGCCATCTTTTTCGGagttattttgttc
attttgatatttctcATTGTCACATATTTCTGCGTCCGCAACGGAGAGTG
TTGTTGGCATAACACCCAAGGAGGAGCGTCAAAGAAACGAAAGAAGGAGG
GTGACGAAGAACTCTCCATCATAGCGGGGGAGACCGCTGATGAAGATTTT
GAGGACAATGCTTCATTCTACAATAAGCCTTATATGATGACTCCCAAAAT
CACAACTTATCATAAACTTGTAAACGAACCAGAGGAAAAACCGACTCAGA
GTTCCGTAGTTTTTCTTGATAACACGACAGTCaataagaaactgaaaaag
ttacGAATACCAGAATCGGTCAAAAGCGTTGCCACGGGTTACACGAGTAC
CGAAGATGACGAAATGGAACGATCTACCAATGACGTCACTGCGCCTGTTC
GGCAAAATATCATGAAAGCTCATCGGAATTATGTGGACGGAGCACGAATT
CGGTTTTCACTTTTATACTCCAAATCAGACTTTTTTTTGATGTTAACGAT
AAATGAAGTGGAAGGAATTCCATCGAAAAGTGAAGGTGGATTCGATTTCA
TACAAGTAGCAATTTGTTTACTACCTGCGAAAAAATATCGTTCGAAAACG
AAATTCGTTTTTCAGTCAGAATCGAGAGCTGTCTTTGATGAAGAACCTTT
TAAATTCTCAAACATTTCTCGTGAGAAATTGAAAGAATCGGCCTTTCGGG
TCCGAGTGCAAGGCAAGAAACTTGGTCGTCACGTGACTTTAGGTGAGGTC
ATTGTTCATTTAATGGACGTGGCACAACGTGGAGGTGGTTTTGAAACTTG
GAGGCCTCTCACTAAAAACAAAAGATGATTAATTTGTTCGAGCATTTAGa
tcatcttttaaaaatttatgtGAATAAAATccatatttatttcaaaaacg
ACTACTCGATTTTCTCAGTGATGTAGCCTCTGTATTCCGAAAAGTTTTCT
CAAAGCCTTTATATTTCGaacatttaagggctctgaccatagtgaatttt
taatatttgccacgtgcaaaatataaattttctacttgatg Run BLAST on NCBI transcript from alignment at sc0000078:393241..397050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007611 ID=TCONS_00007611|Name=TCONS_00007611|organism=Clytia hemisphaerica|type=transcript|length=3810bp|location=Sequence derived from alignment at sc0000078:393241..397050- (Clytia hemisphaerica)
CTCAAGCTGGTCAGAATTTCTCGTCGATGTTCGAAAAATTTTGCATCTTT
TTGTGGTTGTTAATCGCACTAAAGTGGTAACAAGATAAGATCGTTTTGAA
ACGTATTAAGATAGGAGATCGCCATTACAATGGAGTGCAATTAATGATGG
AGGGTGCTCCGATTTAATTAGCGGCAATAAAAATGACATTTAATAATAAA
AGAGAACTAAACAGCGTGACGAATTTTGATCATTTTTGCAAAGAAAAAAA
GATAAGTTGTGTTTTTATATGTAACGGCAAGATGGAATAAAAATCAAGAT
GGCTGAAAATATGAGATGAATTTGCTTGTAAAGGCTTGGTACGTCCATTA
ACATGCGTAAGTTTGTTTTGATTTTTCCTTGTTGTTGTNCTTGTAAAGGC
TTGGTACGTCAATTAGCATGCGTAAGTTTGTTTTGATTTTTCCTTGTTGT
TGTTTTTCCTATTTCGCGCGGATGCTGACTCGGTGAGCATCGTCTGTTAT
CTTTTGAAATTAAAGTTATGGGATAAGGTTTATAAGACATTTTTAACTGA
AGGGACCATAAAACTTGTTCGAGTTAAAGGAGAGACTCGAGTTAAGGAGA
CTGTATTTATCTGGCATAAAATAAGAAAGGGTTTTTTCTAAAGGTACAGA
AAATCTTGTGTTTGCTTACAAAACTTTCTGAAGCTTATTTTTCAACTATC
CGGAGTCCTAGTCTTTTCCCGCCTGAACAGTGGCAGTGGATGGAATCTTG
GTGCGGGAAGCGGGACGTTATGTTCTTATATAAGAACATAGTGTTTCGAT
ACCAAAGATTAAAGAACATTTTAAGTTGAAGCACCAAAATATTAAATACA
AAATGCTAAAAACAAAAAAAATTATGAAGCTTTTTTGAAGTTCTTATAAA
AATCGTGTCAAAAGTGTCTTATTCCAAAGCTATCTGAAATTTCTTTGAAA
ACTGAACAGTTTTGAAACTACTTCAGTGAAAGCCAAGGTACTTATCTCTC
ATACTAACCTAGAAACTCATCTTGATTAAAATCCATTCGCATTCAGTGTT
AACTAGTTCTTAGTTTGCTTGTCATTTTTCAACCAATGCTTCAAACTTTG
AAAAGATAAAAGCACTTTAATTTTTGAACAAAATAATTTAAAAAAATGCT
GTTGAAAATTGTCGAAGAATTATGACTTTAGATGTATAAAATTATTGCAT
CGAAAGTTTAAGTGAAAAACAGAAAAAGCCTTCTCGAGGTTTTTTCGTAA
AGTGAAAAATCAGAAAAAACAGAAAAAAACGAAATATTTGGAATGAAGAT
TAGAGTAGCCATCGACTAAGACCCTGAGACATCCGCCGAGAATGACTTTA
AACGAGTCCGACAAAGCTTAAAAATATTTCTTTTTTCCAAAATAAAAAAA
TCATACAATGCAAATTCACTTTCAGAAAGATTTTCAAATAAAAAACGCTT
GAAAACCTGACATTGATAGACTTTCTTTTCCTCAATCCGAGAGAAAGATT
CCACTGGCATTTCAGAAAAACTTCTGCTCTCCCTGGAAGTACCACTCCAA
CACAGCACGAAAATCGCCATTAAAATAAAACATAAAATCTGTAAATAACA
TAAAAACGTAAATCTGTAAACGGTGAAAATTTTTCTTTCAAAGTACAAAA
AGTGCAGAAAAATGTACAATCCTGATCAGATAAAAAAAACATCATCTCAA
TATAATAAAATTAGGTAGGGATCTGTGGTTTAAAAGATATTCAAGAGTGG
AATATCAGAAAATAAAAAAAAATATTGAAAAGTCTAGAAAATAAAGATGA
AAAATGAAGAAGAAAAAAATAAACTTCGTGAAGAACAGTCTATCAAACGT
TACAGCCTTTTATATCTTCGCTGCAGATTATATTGAGATAGACTTTGGTC
CCCGTTCCTTCATTTCTTTAGGGTGAGATCCTATTTTATTCCCCTCCTTA
AGAAAAAATCTTTGAATAGCTCTTCAAAATTTATAGATTTTTTAAATGAT
TTAAAAGATAATTTTGAAATATCAAAAAACCAAAACCAAAAAAAAAGCCT
TAAGTTTTCAAGTTCTTGTGAGACAAACATAGAGTAAGTTTGTCCTCTCT
CGATCAAAACATGAATTTGCACCGTGGTTGGTTTTATGTGTCCAAAATTT
GCGCTTCGCAGATGGATGGACATTTTCATAAATTACGTTACGTACATCAC
TTGCCTCGTTTTGAAAATGTTGCCATGGTGATTATGTTCCTTGAGGATCT
TTTAAAACTACTTTCTTTTCATAAAAAAGTCATTTAATGTCTCAAGGGAC
ATGCCTTAAGTGGATAAATTTTGACGTGGATTTAATTTTGCGATTGGCCA
AAATACGATTTTTGGCGGGGATTTAATTTGGCGATAGATCAATTTCGTAA
AATTTGGCGGGGATTTAATTTGGCGAATTGGAAGTTTTGTCACCCTGAAA
TGGGTGAAGATTACTCAGAAATATACTAAAAAGTGGTGATTTTTCACATA
ATTCTCTCTTTGTTAAATTTGGCGGGGATTTAATTTGGCGAATTACCGAA
TTTGGAAATTTTGGCGAGGATTTAATTTGGCGAATTTTGGTAAAATTTGG
ATTAGTTTCATGGGTCTACATCCGGGGGGGGTACTAGGTTTGCGAGGTCA
CGGGTATGTCCGAGCCAAAAATCGAAAATCGACCCTTAGAGAGAGTTTCT
AACATTTCTATCTCTTTTTTTTCAGCGGGCCTTTTTGGAATCGCCATCTT
TTTCGGAGTTATTTTGTTCATTTTGATATTTCTCATTGTCACATATTTCT
GCGTCCGCAACGGAGAGTGTTGTTGGCATAACACCCAAGGAGGAGCGTCA
AAGAAACGAAAGAAGGAGGGTGACGAAGAACTCTCCATCATAGCGGGGGA
GACCGCTGATGAAGATTTTGAGGACAATGCTTCATTCTACAATAAGCCTT
ATATGATGACTCCCAAAATCACAACTTATCATAAACTTGTAAACGAACCA
GAGGAAAAACCGACTCAGAGTTCCGTAGTTTTTCTTGATAACACGACAGT
CAATAAGAAACTGAAAAAGTTACGAATACCAGAATCGGTCAAAAGCGTTG
CCACGGGTTACACGAGTACCGAAGATGACGAAATGGAACGATCTACCAAT
GACGTCACTGCGCCTGTTCGGCAAAATATCATGAAAGCTCATCGGAATTA
TGTGGACGGAGCACGAATTCGGTTTTCACTTTTATACTCCAAATCAGACT
TTTTTTTGATGTTAACGATAAATGAAGTGGAAGGAATTCCATCGAAAAGT
GAAGGTGGATTCGATTTCATACAAGTAGCAATTTGTTTACTACCTGCGAA
AAAATATCGTTCGAAAACGAAATTCGTTTTTCAGTCAGAATCGAGAGCTG
TCTTTGATGAAGAACCTTTTAAATTCTCAAACATTTCTCGTGAGAAATTG
AAAGAATCGGCCTTTCGGGTCCGAGTGCAAGGCAAGAAACTTGGTCGTCA
CGTGACTTTAGGTGAGGTCATTGTTCATTTAATGGACGTGGCACAACGTG
GAGGTGGTTTTGAAACTTGGAGGCCTCTCACTAAAAACAAAAGATGATTA
ATTTGTTCGAGCATTTAGATCATCTTTTAAAAATTTATGTGAATAAAATC
CATATTTATTTCAAAAACGACTACTCGATTTTCTCAGTGATGTAGCCTCT
GTATTCCGAAAAGTTTTCTCAAAGCCTTTATATTTCGAACATTTAAGGGC
TCTGACCATAGTGAATTTTTAATATTTGCCACGTGCAAAATATAAATTTT
CTACTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007611-exon-sc0000078-1575043694:396718..397050 | TCONS_00007611-exon-sc0000078-1575043694:396718..397050 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1575043694:396630..396652 | TCONS_00007611-exon-sc0000078-1575043694:396630..396652 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1575043694:393241..394325 | TCONS_00007611-exon-sc0000078-1575043694:393241..394325 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1510915933:396718..397050 | TCONS_00007611-exon-sc0000078-1510915933:396718..397050 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1510915933:396630..396652 | TCONS_00007611-exon-sc0000078-1510915933:396630..396652 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1510915933:393241..394325 | TCONS_00007611-exon-sc0000078-1510915933:393241..394325 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1491911889:396718..397050 | TCONS_00007611-exon-sc0000078-1491911889:396718..397050 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1491911889:396630..396652 | TCONS_00007611-exon-sc0000078-1491911889:396630..396652 | Clytia hemisphaerica | exon |
| TCONS_00007611-exon-sc0000078-1491911889:393241..394325 | TCONS_00007611-exon-sc0000078-1491911889:393241..394325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:393241..397050 - |
Blast
The following BLAST results are available for this feature:
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