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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007584 ID=TCONS_00007584|Name=TCONS_00007584|organism=Clytia hemisphaerica|type=transcript|length=1978bp
gaaatatgccggaaaaactgtttttttggcattttctcgagattttatca
ttagttttttctgattttttgctcaaagatgcgtgttaacaatgcccaaa
tcatggccgagtccgatttttcagaaaatgttttttccagccaaaaaagc
cggaaatttccgtttttgcagatttgcaGATTTTTTCGTTTCATGTCTTT
GTTTTTTTCAAACAaaaacatcatttataagaatgtccacgattaagcat
ggttcaattttcaatgaaactgattttggtacaggaactttctaaaaatc
gccagaacagccgagaattgctggattccatgaatttctcgagttgttct
cgtattattctgcattttcatactattgttctcatttttcaattgtctta
ttacatcaatcttcaggtaggtccattcagcatgtagcttgttttacAGT
TGTTGACTTAATAATGGCAAACACAGTTGAAAATTTAattacaaagataa
aaagtttaCCTGTAAAAACTCAGCGGGGTATTTCAGCCATCATAGGCGCA
ACAGTTGCAGATGCAGCCACAAGACCATTACATTGGGTTTACAAACAACC
AACCTTAGACGCCACCATCAGTGAGTCAACCACACCTGAATTTTGGCCCG
AAAGCAAAAGCCCTTTCTACACTTTGCCACTAGGTGCAACAAGCAATTAT
AATGATGTTGCTGTTTCCTCTCTAACCTCCCTATATGAGAATGGTGGTGA
GCTGAATATGAAACATCTTTGTGAGACCTTCAAGAAGGATTTTGGACCGG
GAACCATTTATGAAGAAGCATTAACACGTAGACCTACTGATCGATCAAAG
TTACCGATGGAAGGGCATTGGCTGCATAAAGGAGTCATTTTGTTTCTCGA
GAATTATGCAACAAGAGGAGAAATTAAGAATCTGGGTGACTCTACTCATA
ATGAATCTGATGGGTTTTGTGCAGCTCTTCCAATCATCGTCAAACATGCT
GGCAGTGATGATATGTGGGAACAGGCTTCAAAAGCAGCAATGTTGTTGAA
TACCAACCCTAAGATTCTCAATATGTTTGAGGCAGGAGCTCTTCTGATCA
GCAACCATATTTTAGGTGAAGAAGAAGCATTTAGTAAGGTCACAAATGTT
GTCAAAGACAAATTACCTGATGTTTATGAGTTAATGGTTGAAGTAGAGGA
AGCTAAATCCATGCCGTTTATTACAACAGTTGCTCAATTTGGAAAGGCTT
GTTATCTACCAGGGTCTTTTCAAGGTGCGCTATTAGCAATGCAGCAAACA
TCATCCTTTGTTGATGCAGTTCGATTGAATATACGTGCCGGTGGTTGTAA
CTGTAGCCGATCAAATCTCATTGGTGCTTGCTATGGTGCTAAATATGGTA
TTGATGGCATACCAATTGATTGgttaaagaaagttaaaaatattgaGAAT
ACCATGGAGAAAGCTATACAACTTTTGAATGCttaaaaaattatattgca
CCAGCTAGAAACATACCCTAGTAGTAGTAATAAATTAATGAAAGTCATAA
AATAGCCCattattcattttctttttctctgtATAACTCAGTTATTTATT
TTCAGCGTGATTTTTTAGTCTTTTAGTCCtttcagattttttcttttcta
cgtaTTTATATTCCCACGTACATCACTAAATATTTCCTGTACTTATTTAT
TTAATGTATTATTGTGTAACTTTTTTTGACTAGTTTGTGTGGCCTGATTT
GTCTGTGGTTTATCAATCATAATACCCTATTCAATTTATGATATACCTGT
ACCGTATTGTACTGTATAGCAAAGGTTTGATACttaaaagcaaaataaat
aatcaatttcttcaaacaaaacattttaaCTTGCAAATGCTTTAATTAAT
CGAAATCAAAGATTGCTTTTAGGATTAATAACCAGTacgtaatttctttc
ttttgtatttGATTCAAAATTTCTAGAA Run BLAST on NCBI transcript from alignment at sc0000078:339638..341615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007584 ID=TCONS_00007584|Name=TCONS_00007584|organism=Clytia hemisphaerica|type=transcript|length=1978bp|location=Sequence derived from alignment at sc0000078:339638..341615+ (Clytia hemisphaerica)
gaaatatgccggaaaaactgtttttttggcattttctcgagattttatca
ttagttttttctgattttttgctcaaagatgcgtgttaacaatgcccaaa
tcatggccgagtccgatttttcagaaaatgttttttccagccaaaaaagc
cggaaatttccgtttttgcagatttgcaGATTTTTTCGTTTCATGTCTTT
GTTTTTTTCAAACAaaaacatcatttataagaatgtccacgattaagcat
ggttcaattttcaatgaaactgattttggtacaggaactttctaaaaatc
gccagaacagccgagaattgctggattccatgaatttctcgagttgttct
cgtattattctgcattttcatactattgttctcatttttcaattgtctta
ttacatcaatcttcaggtaggtccattcagcatgtagcttgttttacAGT
TGTTGACTTAATAATGGCAAACACAGTTGAAAATTTAattacaaagataa
aaagtttaCCTGTAAAAACTCAGCGGGGTATTTCAGCCATCATAGGCGCA
ACAGTTGCAGATGCAGCCACAAGACCATTACATTGGGTTTACAAACAACC
AACCTTAGACGCCACCATCAGTGAGTCAACCACACCTGAATTTTGGCCCG
AAAGCAAAAGCCCTTTCTACACTTTGCCACTAGGTGCAACAAGCAATTAT
AATGATGTTGCTGTTTCCTCTCTAACCTCCCTATATGAGAATGGTGGTGA
GCTGAATATGAAACATCTTTGTGAGACCTTCAAGAAGGATTTTGGACCGG
GAACCATTTATGAAGAAGCATTAACACGTAGACCTACTGATCGATCAAAG
TTACCGATGGAAGGGCATTGGCTGCATAAAGGAGTCATTTTGTTTCTCGA
GAATTATGCAACAAGAGGAGAAATTAAGAATCTGGGTGACTCTACTCATA
ATGAATCTGATGGGTTTTGTGCAGCTCTTCCAATCATCGTCAAACATGCT
GGCAGTGATGATATGTGGGAACAGGCTTCAAAAGCAGCAATGTTGTTGAA
TACCAACCCTAAGATTCTCAATATGTTTGAGGCAGGAGCTCTTCTGATCA
GCAACCATATTTTAGGTGAAGAAGAAGCATTTAGTAAGGTCACAAATGTT
GTCAAAGACAAATTACCTGATGTTTATGAGTTAATGGTTGAAGTAGAGGA
AGCTAAATCCATGCCGTTTATTACAACAGTTGCTCAATTTGGAAAGGCTT
GTTATCTACCAGGGTCTTTTCAAGGTGCGCTATTAGCAATGCAGCAAACA
TCATCCTTTGTTGATGCAGTTCGATTGAATATACGTGCCGGTGGTTGTAA
CTGTAGCCGATCAAATCTCATTGGTGCTTGCTATGGTGCTAAATATGGTA
TTGATGGCATACCAATTGATTGgttaaagaaagttaaaaatattgaGAAT
ACCATGGAGAAAGCTATACAACTTTTGAATGCttaaaaaattatattgca
CCAGCTAGAAACATACCCTAGTAGTAGTAATAAATTAATGAAAGTCATAA
AATAGCCCattattcattttctttttctctgtATAACTCAGTTATTTATT
TTCAGCGTGATTTTTTAGTCTTTTAGTCCtttcagattttttcttttcta
cgtaTTTATATTCCCACGTACATCACTAAATATTTCCTGTACTTATTTAT
TTAATGTATTATTGTGTAACTTTTTTTGACTAGTTTGTGTGGCCTGATTT
GTCTGTGGTTTATCAATCATAATACCCTATTCAATTTATGATATACCTGT
ACCGTATTGTACTGTATAGCAAAGGTTTGATACttaaaagcaaaataaat
aatcaatttcttcaaacaaaacattttaaCTTGCAAATGCTTTAATTAAT
CGAAATCAAAGATTGCTTTTAGGATTAATAACCAGTacgtaatttctttc
ttttgtatttGATTCAAAATTTCTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007584-exon-sc0000078-1491911889:339638..341615 | TCONS_00007584-exon-sc0000078-1491911889:339638..341615 | Clytia hemisphaerica | exon |
| TCONS_00007584-exon-sc0000078-1510915933:339638..341615 | TCONS_00007584-exon-sc0000078-1510915933:339638..341615 | Clytia hemisphaerica | exon |
| TCONS_00007584-exon-sc0000078-1575043694:339638..341615 | TCONS_00007584-exon-sc0000078-1575043694:339638..341615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:339638..341615 + |
Blast
The following BLAST results are available for this feature:
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