|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007574 ID=TCONS_00007574|Name=TCONS_00007574|organism=Clytia hemisphaerica|type=transcript|length=2959bp
CAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTACC
AATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAACAC
CTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACACAC
CAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACTCA
GACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCACT
ATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAACT
GTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAATT
TTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTGCT
GTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGaatgaaagaaaaacaa
cgcATTCAGTGCCAATCACAATACGAACTTCCCCATTCTGATCCGCCGCT
AGATCCTCAAGAAGCGCTCCCGCAGCATCACGAATCGATCAAAGATTTCA
CCGAAGAGGACAATATGTCTTATGAAGATGAGAATATAAACGTTGTAAGA
TTTGACCACATAGAGGACCATTTACCACAAAATATTTTAGATTCGAGAAA
TGGAACTTATGATATGAACCCTCCTCCCAACGTTCCGACATCTTACGTTT
AAAGCTGCTTGTTAGTTGACGTTTTTGCGTAACCGTATCtaaaatttcaa
ggaaaatgcTTCACGAACTTTAAATAACAAATATTATGATAGAAAAAACT
AGAAATGATTTTCGGGCAAGTTATACCGATAATTATCGGTTTTTTTATTG
GAAAATATAGCTCAATCACGTCCAGACTCGtataaaaatacaaattattG
ATCTCGTATATAATGGAGTTATTTAATagaatcaaaaaagaaaattatcc
tAAATCAATAAACATCACTACAAGTCACTTTATAAAAAGACATCAAACAT
ATTCAGAAAGATTTGGTTGTTCTTTGGTTTCCATGGCAATGTCATTATGA
GCAGTGGTTGGCGGTTCCGCAAAAGTCACTTCCCTATCAACCCTTCTCGC
TGTCGTTGTCGACTTTTTATTGATGGTTGCCTTTTCTCTGATTGGTCCAC
AACAAATTCCAAATAAGGCAGTGATAAAACCGAGACCGACTCCAATCCAA
CCTAGATACCAGGACCAGGCGAATTTTGACGGCGACAAATCTCGTGTTGT
TTCTTCGTGTTTGTTGTACGTAAACAAGCCGACAGCGACACCTGTCGTAA
TAGATGCCGTCACTAGCAACAATGAAACGAAGGGAGGTTTAATGTATGAC
GTGAACCGACACAAGAAACCCAGAATGGATGCCAAAGCAGCGGCTGCGCT
AGAAATTATGGTCAGCGCACGCTGTGATCGTAAAGCGTGATCACCCAATC
CTGCGTCACGGTCGACGCACGTTTTCATAAAAGCACCGATGGCTTGCTTG
CATTCCCTCCACAGACCATAATTCGACTCGTCGGCCTCTTGGAGCCAGTG
ATCACCTCCACAACACGCCGCCATTAACACAAACACAATGATAGAGCCAA
GCAAAAGCATATATcatcaaacaaacaaacaagatgCTGTACATGAAACG
AAGTGTATTAGTTATCTTCACATCTCTCTTATTGACCATGTTACTGACCA
GTGGTTTCAGCGATCATTGGATATTCGACAAGTCGAACGTTTCAGATTAC
TTCTTCCTCAACTATGGTTTGTGGAGTTTATGTAATGCTACTGTTGATCC
ACTCACTAACCTTCCTGTCACCACAGTTTGCAGATCTCGTGATGATGTCA
CTGTTACAACCCAAGCTGTTCAAGGACTTGTTGTCTTGGCCTGTTTACTT
TGTTTCCTAGCAACCATTTACGCGACAATTGGATTATTCAAGAAAGATTT
TCGCGGGTGGTTGGTGTCTGTTTATCTCGTCATGGCCGGTATCTGCATGA
TTGTTGCATTATCCGTATTTTCCGGACACGAGAAAGCGAAAGTAGTGACT
GGTGGACGTTTGTTTTTTCTACACGGCTGGTCATTTGTTTTGGCTGGAAG
TTCGACAGCAGGCTGTTTTTTCTGCTCAATCTACAGCGCCATTGCCAAAT
TAGACACACCTTATTAAACTTGATGTGCATATCTTTCAATTCTAATAGAA
CTAGATGGTTGGATTTGAGTTTATAAGGGTTGTTGGATGGCGTCAGTATC
TGAGACcgcgtcaatgcaatgacttcagaaATTAGAAGTCTTCCCACCCT
TATTAACTTTAGCCCATCTCCCTTTGAAGAAGGTTTTGAATTATGGTTGG
TTGGTGCTACTTTTGAATATAAGTACTAAATTTGGTGGACAATCCAAAAT
GTTACGTTGCAATGAACACTGGTCTCACCAGTTTGATGAACCAAATAGAA
TAATGTTGTAAAGTGTTTTAAAATAAGTTAAGCACTTTAAAATATTTaat
cacgaaatcacgaacTTGAAAAAACGCCCTTGAAACCacgccatcacgaa
aatcgctggTGGAGCCTCTTAAACTAAAACTGGAATGAAAACTGAatgtt
tttcttccttttttatNgaaaaaaattttggggtatatttcagctaaaaa
aacgtgacctaacttataaacgtgttaaatgcataatccaggtaggtcca
tcaaagtatcacttgtttatcttttctccatttttaatcattttgcGGAA
CATAGAATCCATTCATCGATAGCCTAGTATAAAGTCCCTTGTATTGATTG
AAATTAAGAATGTCGATATATTAATATTCTAATCTTCAGGAGAAATGTGT
GTTCCCAGAATTTTAATCATAAATAGCTCTTTGACTAATATGATAATATG
CAGACTTTATAAACAAAACATTAAGTGCACACTCTTTGTCGTTGGATTTT
ATTTGTGCT Run BLAST on NCBI protein sequence of TCONS_00007574-protein >TCONS_00007574-protein ID=TCONS_00007574-protein|Name=TCONS_00007574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
QEFSTEASDSVSYSPLPINTEISESRSIENSLTPDEIDISTSNPQDLSTH
QLQPHTVVSSQVKPLTQTSVLFLQSSDVESTHHYTTIIPSPLSSSLLNPT
VSKTQNLKKTDDREDEFLYKMVFILFGTLFIVCCIVVLLLFKRERMKEKQ
RIQCQSQYELPHSDPPLDPQEALPQHHESIKDFTEEDNMSYEDENINVVR
FDHIEDHLPQNILDSRNGTYDMNPPPNVPTSYV Run BLAST on NCBI transcript from alignment at sc0000078:263444..269212+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007574 ID=TCONS_00007574|Name=TCONS_00007574|organism=Clytia hemisphaerica|type=transcript|length=5769bp|location=Sequence derived from alignment at sc0000078:263444..269212+ (Clytia hemisphaerica)
CAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTACC
AATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAACAC
CTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACACAC
CAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACTCA
GACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCACT
ATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAACT
GTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAATT
TTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTGCT
GTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGGTATCTTCTGCTaata
ggcttttccagaaaatttgtggctggaaatgctgcaccccctggaattcc
acgCAATTTCAGACTTAagcccctctggaattctgaattttagtaggatt
taaaaggctaccccatggaattccagttatttttgacatatttttgtatc
tccctatggaattccgccacatatcaaaccttacccccttgaaACGGAAa
cggacctcctcaacagggggtatacggtttttttctggagaaGCCCAATA
CTCACACTACAATGCCTTTTTATTTTATGGGGGGAGGGTATATTGGTTAC
TAGTAGATTAATTTGAATCCCGGGGCTAATAGGTTTGTAGGTTGACGGGT
ATTTCCGAGCTAggaatcgaaaatcgacccatAGATAGATTTTTTGCCAG
AGTTTGGTCCAGATTTTCTCAGATCTTTCCAAGTAAAATGTTTTCCATTT
TTATGGTTAAGGGACGTGTCAAATTCCCAACGTGTAACTTTTCTAATCTG
AGAGTGATCTTCAGTGTTAAAAAGTACCCTCTCGCTCGCACATAATCGGT
ACCATTTTTCCTAGCCCCCCAGGGTATGAACTGATTGTGGCTCAATTTTT
CTCTTCGATCCGCTCCTCAGAAACAAGCCTCTTtctttttgtcctttttt
aCGAGTACGGTAGTAGTAATAcagaaataaatttattttgtggtggaaat
tttttaattgattgattgattgatttgaaaGTGAGTCTTTCAAGTTTGTT
TCTGTGTCATGCTAAATGAAACCAACACTTAACTTATGTCTTGAACAATT
CTTCTCCTTCCagaatgaaagaaaaacaacgcATTCAGTGCCAATCACAA
TACGAACTTCCCCATTCTGATCCGCCGCTAGATCCTCAAGAAGCGCTCCC
GCAGCATCACGAATCGATCAAAGATTTCACCGAAGAGGACAATATGTCTT
ATGAAGATGAGAATATAAACGTTGTAAGATTTGACCACATAGAGGACCAT
TTACCACAAAATATTTTAGATTCGAGAAATGGAACTTATGATATGAACCC
TCCTCCCAACGTTCCGACATCTTACGTTTAAAGCTGCTTGTTAGTTGACG
TTTTTGCGTAACCGTATCtaaaatttcaaggaaaatgcTTCACGAACTTT
AAATAACAAATATTATGATAGAAAAAACTAGAAATGATTTTCGGGCAAGT
TATACCGATAATTATCGGTTTTTTTATTGGAAAATATAGCTCAATCACGT
CCAGACTCGtataaaaatacaaattattGATCTCGTATATAATGGAGTTA
TTTAATagaatcaaaaaagaaaattatcctAAATCAATAAACATCACTAC
AAGTCACTTTATAAAAAGACATCAAACATATTCAGAAAGATTTGGTTGTT
CTTTGGTTTCCATGGCAATGTCATTATGAGCAGTGGTTGGCGGTTCCGCA
AAAGTCACTTCCCTATCAACCCTTCTCGCTGTCGTTGTCGACTTTTTATT
GATGGTTGCCTTTTCTCTGATTGGTCCACAACAAATTCCAAATAAGGCAG
TGATAAAACCGAGACCGACTCCAATCCAACCTAGATACCAGGACCAGGCG
AATTTTGACGGCGACAAATCTCGTGTTGTTTCTTCGTGTTTGTTGTACGT
AAACAAGCCGACAGCGACACCTGTCGTAATAGATGCCGTCACTAGCAACA
ATGAAACGAAGGGAGGTTTAATGTATGACGTGAACCGACACAAGAAACCC
AGAATGGATGCCAAAGCAGCGGCTGCGCTAGAAATTATGGTCAGCGCACG
CTGTGATCGTAAAGCGTGATCACCCAATCCTGCGTCACGGTCGACGCACG
TTTTCATAAAAGCACCGATGGCTTGCTTGCATTCCCTCCACAGACCATAA
TTCGACTCGTCGGCCTCTTGGAGCCAGTGATCACCTCCACAACACGCCGC
CATTAACACAAACACAATGATAGAGCCAAGCAAAAGGTACGTAACCGAAT
GTTTCAAATGACAACACCTGCTCTCATTCGACATCCCTCTATTAGCAATT
TCCAAAGTTTTACACAGTTAGGAAGCTTGtcaattcttttgattttttaa
ttagattctAGTATTCCTTAGAAAACTGCTCTCAATACAATCTTCTAACT
TCTGTTGCTGTTTTAATGCCAACTTTTAGCCTACTACTGATATCACAAAG
TGTCCCGTTCGAGAcaagaaatttgttttatacATTTGNAGCCTACTACT
GATATCACACCTTACAAAGTGTCCCGTTCGAGACAAGAAATGTTTTATAC
ATTTGTATCATCCTTCAtccatttttctatttttcttatcaTTTGACTGA
TCAGTATTCTTTTTACTTTGTGGTGCAAATTTTAGTGAAGTGATCTTTTG
ATATTAAGATAACCTGATCGTGACTCTTTTCTTTTTGCATAATGATTTGT
AAAATTGGTAAAGATAATTTATTGACCAGTCTATTCCAacacccttgtct
cacagccccggtggaaattTTTCCTACAtcgggataaaaattcctatcaa
aatcccaatggggataagtTTTATTGTTCCAGGCTCCAAAAATTCAGTTC
AGCGGGAGTCCAACCGGGACTGTGACACAAGGGTGTACTCTATCTCTAGG
CGACTAGTTAGGTGGGCCTATTCTCAACTTcatttgagctacaatctgaa
aATTTGGCAGACATTTTGCAcatttgttccttgggtgaattttgattttt
cgggcctggggacgagtatttcgccaaaacgaggctaaaacttggggcag
cctggagactttaaaaattgttcgatttggctgaaattttgcacacttgt
tccttgggtgaatatctgggggtctacaattgggctcatgaatagtttga
aaccactgaagttgagcccagtgcgttgcgcacgttcgactatctTTGTC
AGAAGCAACTCACAAGTCACAAGTCAATTGTGAACCGGTGTTtatacttt
tgaaaattacctCAAAACTACACCCCTCCCTATAGAGGCACAAATTAATA
ATGAGTTTAGTAATAACATCCTACTATGGAGAAGATAGTTCTTCTTTTGC
CTCTAAATAGTAAGAAGAAAACGACTAAGAATTTAAGATTTCCAACTATA
TCGTTTTCAGTTTGAAAATCCATTGTTATGTCTCAGcgtcaaatattttc
ttctttggTGGGAAGAGGATTTTTAGTTTAATACAATTAGGCAGGGGGCA
CGAGGGTACAGAAGCTCATCGGAGTCTTAAATATTGTATTAAAGTCTATG
TATTCTAACGCTGAGTTTCTCAAAGACGAGTTCCTTTTTCTCTCGACTAG
TACGAAGCTACATCCGTTGTTGATTCAGATTTTAATTAACATTATTTTTA
ATTACCTCAGCTTTATGGTTATTATAGTGTAGTATTGTAATACTATGAGT
AATTAAAGACTTGTAAATGAGACCTATTCATTAGCTCCTGACAATAGGAT
AGAATTAACACTATTTTATATGCAAATCCGCTTTTTACTTCCATCAAAAT
GCCATAAACAAGTAGGAAAACAGTTCGAAAAAGTGTTTATAGTGCTGGCA
AATTAATGATTATATGAAGAAAGAATGGAGTTGAGACTTTGGCTGCCTTA
TTTCCACAAAGTAAAAGTTGCTGAAAGCTTACACATAGAAATGTCTAGCT
AAGAGCAAAAAAACTTTAGTAGGTTGGAGGATAGGTCAAGTCTTCTCTCG
TATTCTTGATCTTGAATTCTTCTCTGTTTCAAGTTACTACACTTTAGAAG
TCTATTTAATCAGGAATAAATCAAGTACTTGGATAAAATCTGATGTTCAT
ATTTTGTGACTACTTTGACTTAGACTTCTGAAATTAATTTCTTCATATTC
CAGCAGTGGAGATCTTTTATTATGTTCTTCAGGGTAATATACTAATACTA
TCTTCTCTTTATTTCAGCATATATcatcaaacaaacaaacaagatgCTGT
ACATGAAACGAAGTGTATTAGTTATCTTCACATCTCTCTTATTGACCATG
TTACTGACCAGTGGTTTCAGCGATCATTGGATATTCGACAAGTCGAACGT
TTCAGATTACTTCTTCCTCAACTATGGTTTGTGGAGTTTATGTAATGCTA
CTGTTGATCCACTCACTAACCTTCCTGTCACCACAGTTTGCAGATCTCGT
GATGATGTCACTGTTACAACCCAAGCTGTTCAAGGACTTGTTGTCTTGGC
CTGTTTACTTTGTTTCCTAGCAACCATTTACGCGACAATTGGATTATTCA
AGAAAGATTTTCGCGGGTGGTTGGTGTCTGTTTATCTCGTCATGGCCGGT
ATCTGCATGATTGTTGCATTATCCGTATTTTCCGGACACGAGAAAGCGAA
AGTAGTGACTGGTGGACGTTTGTTTTTTCTACACGGCTGGTCATTTGTTT
TGGCTGGAAGTTCGACAGCAGGCTGTTTTTTCTGCTCAATCTACAGCGCC
ATTGCCAAATTAGACACACCTTATTAAACTTGATGTGCATATCTTTCAAT
TCTAATAGAACTAGATGGTTGGATTTGAGTTTATAAGGGTTGTTGGATGG
CGTCAGTATCTGAGACcgcgtcaatgcaatgacttcagaaATTAGAAGTC
TTCCCACCCTTATTAACTTTAGCCCATCTCCCTTTGAAGAAGGTTTTGAA
TTATGGTTGGTTGGTGCTACTTTTGAATATAAGTACTAAATTTGGTGGAC
AATCCAAAATGTTACGTTGCAATGAACACTGGTCTCACCAGTTTGATGAA
CCAAATAGAATAATGTTGTAAAGTGTTTTAAAATAAGTTAAGCACTTTAA
AATATTTaatcacgaaatcacgaacTTGAAAAAACGCCCTTGAAACCacg
ccatcacgaaaatcgctggTGGAGCCTCTTAAACTAAAACTGGAATGAAA
ACTGAatgtttttcttccttttttatNgaaaaaaattttggggtatattt
cagctaaaaaaacgtgacctaacttataaacgtgttaaatgcataatcca
ggtaggtccatcaaagtatcacttgtttatcttttctccatttttaatca
ttttgcGGAACATAGAATCCATTCATCGATAGCCTAGTATAAAGTCCCTT
GTATTGATTGAAATTAAGAATGTCGATATATTAATATTCTAATCTTCAGG
AGAAATGTGTGTTCCCAGAATTTTAATCATAAATAGCTCTTTGACTAATA
TGATAATATGCAGACTTTATAAACAAAACATTAAGTGCACACTCTTTGTC
GTTGGATTTTATTTGTGCT Coding sequence (CDS) from alignment at sc0000078:263444..269212+ >TCONS_00007574 ID=TCONS_00007574|Name=TCONS_00007574|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000078:263444..269212+ (Clytia hemisphaerica)
CAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTACC
AATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAACAC
CTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACACAC
CAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACTCA
GACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCACT
ATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAACT
GTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAATT
TTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTGCT
GTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGaatgaaagaaaaacaa
cgcATTCAGTGCCAATCACAATACGAACTTCCCCATTCTGATCCGCCGCT
AGATCCTCAAGAAGCGCTCCCGCAGCATCACGAATCGATCAAAGATTTCA
CCGAAGAGGACAATATGTCTTATGAAGATGAGAATATAAACGTTGTAAGA
TTTGACCACATAGAGGACCATTTACCACAAAATATTTTAGATTCGAGAAA
TGGAACTTATGATATGAACCCTCCTCCCAACGTTCCGACATCTTACGTTT
AACAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTA
CCAATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAAC
ACCTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACAC
ACCAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACT
CAGACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCA
CTATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAA
CTGTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAA
TTTTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTG
CTGTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGaatgaaagaaaaac
aacgcATTCAGTGCCAATCACAATACGAACTTCCCCATTCTGATCCGCCG
CTAGATCCTCAAGAAGCGCTCCCGCAGCATCACGAATCGATCAAAGATTT
CACCGAAGAGGACAATATGTCTTATGAAGATGAGAATATAAACGTTGTAA
GATTTGACCACATAGAGGACCATTTACCACAAAATATTTTAGATTCGAGA
AATGGAACTTATGATATGAACCCTCCTCCCAACGTTCCGACATCTTACGT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007574-exon-sc0000078-1491911889:263444..263877 | TCONS_00007574-exon-sc0000078-1491911889:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1510915933:263444..263877 | TCONS_00007574-exon-sc0000078-1510915933:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1575043694:263444..263877 | TCONS_00007574-exon-sc0000078-1575043694:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1491911889:264707..265879 | TCONS_00007574-exon-sc0000078-1491911889:264707..265879 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1510915933:264707..265879 | TCONS_00007574-exon-sc0000078-1510915933:264707..265879 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1575043694:264707..265879 | TCONS_00007574-exon-sc0000078-1575043694:264707..265879 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1491911889:267861..269212 | TCONS_00007574-exon-sc0000078-1491911889:267861..269212 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1510915933:267861..269212 | TCONS_00007574-exon-sc0000078-1510915933:267861..269212 | Clytia hemisphaerica | exon |
| TCONS_00007574-exon-sc0000078-1575043694:267861..269212 | TCONS_00007574-exon-sc0000078-1575043694:267861..269212 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:263444..269212 + |
Blast
The following BLAST results are available for this feature:
|
