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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007573 ID=TCONS_00007573|Name=TCONS_00007573|organism=Clytia hemisphaerica|type=transcript|length=1817bp
CAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTACC
AATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAACAC
CTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACACAC
CAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACTCA
GACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCACT
ATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAACT
GTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAATT
TTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTGCT
GTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGaatgaaagaaaaacaa
cgcATTCAGTGCCAATCACAATACGAACTTCCCCATTCTGATCCGCCGCT
AGATCCTCAAGAAGCGCTCCCGCAGCATCACGAATCGATCAAAGATTTCA
CCGAAGAGGACAATATGTCTTATGAAGATGAGAATATAAACGTTGTAAGA
TTTGACCACATAGAGGACCATTTACCACAAAATATTTTAGATTCGAGAAA
TGGAACTTATGATATGAACCCTCCTCCCAACGTTCCGACATCTTACGTTT
AAAGCTGCTTGTTAGTTGACGTTTTTGCGTAACCGTATCtaaaatttcaa
ggaaaatgcTTCACGAACTTTAAATAACAAATATTATGATAGAAAAAACT
AGAAATGATTTTCGGGCAAGTTATACCGATAATTATCGGTTTTTTTATTG
GAAAATATAGCTCAATCACGTCCAGACTCGtataaaaatacaaattattG
ATCTCGTATATAATGGAGTTATTTAATagaatcaaaaaagaaaattatcc
tAAATCAATAAACATCACTACAAGTCACTTTATAAAAAGACATCAAACAT
ATTCAGAAAGATTTGGTTGTTCTTTGGTTTCCATGGCAATGTCATTATGA
GCAGTGGTTGGCGGTTCCGCAAAAGTCACTTCCCTATCAACCCTTCTCGC
TGTCGTTGTCGACTTTTTATTGATGGTTGCCTTTTCTCTGATTGGTCCAC
AACAAATTCCAAATAAGGCAGTGATAAAACCGAGACCGACTCCAATCCAA
CCTAGATACCAGGACCAGGCGAATTTTGACGGCGACAAATCTCGTGTTGT
TTCTTCGTGTTTGTTGTACGTAAACAAGCCGACAGCGACACCTGTCGTAA
TAGATGCCGTCACTAGCAACAATGAAACGAAGGGAGGTTTAATGTATGAC
GTGAACCGACACAAGAAACCCAGAATGGATGCCAAAGCAGCGGCTGCGCT
AGAAATTATGGTCAGCGCACGCTGTGATCGTAAAGCGTGATCACCCAATC
CTGCGTCACGGTCGACGCACGTTTTCATAAAAGCACCGATGGCTTGCTTG
CATTCCCTCCACAGACCATAATTCGACTCGTCGGCCTCTTGGAGCCAGTG
ATCACCTCCACAACACGCCGCCATTAACACAAACACAATGATAGAGCCAA
GCAAAAGGTACGTAACCGAATGTTTCAAATGACAACACCTGCTCTCATTC
GACATCCCTCTATTAGCAATTTCCAAAGTTTTACACAGTTAGGAAGCTTG
tcaattcttttgattttttaattagattctAGTATTCCTTAGAAAACTGC
TCTCAATACAATCTTCTAACTTCTGTTGCTGTTTTAATGCCAACTTTTAG
CCTACTACTGATATCAC Run BLAST on NCBI transcript from alignment at sc0000078:263444..266089+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007573 ID=TCONS_00007573|Name=TCONS_00007573|organism=Clytia hemisphaerica|type=transcript|length=2646bp|location=Sequence derived from alignment at sc0000078:263444..266089+ (Clytia hemisphaerica)
CAAGAATTCTCGACTGAAGCCTCTGATTCTGTTTCTTATTCGCCTTTACC
AATAAATACTGAGATTTCAGAATCAAGATCAATAGAAAATAGCCTAACAC
CTGACGAAATCGATATCTCAACCTCCAACCCACAAGATTTATCAACACAC
CAATTACAACCACATACTGTCGTCAGTTCACAAGTAAAACCCCTCACTCA
GACTTCGGTACTGTTCTTACAATCTTCTGATGTAGAATCTACTCACCACT
ATACCACAATCATACCTTCACCACTGAGCAGCTCTTTACTGAATCCAACT
GTTTCTAAAacacaaaatttgaagaagactGATGACCGTGAGGATGAATT
TTTATACAAGATGGTTTTCATTTTGTTTGGCACTTTATTCATCGTTTGCT
GTATCGTGGTACTGCTGCTCTTTAAACGAGAAAGGTATCTTCTGCTaata
ggcttttccagaaaatttgtggctggaaatgctgcaccccctggaattcc
acgCAATTTCAGACTTAagcccctctggaattctgaattttagtaggatt
taaaaggctaccccatggaattccagttatttttgacatatttttgtatc
tccctatggaattccgccacatatcaaaccttacccccttgaaACGGAAa
cggacctcctcaacagggggtatacggtttttttctggagaaGCCCAATA
CTCACACTACAATGCCTTTTTATTTTATGGGGGGAGGGTATATTGGTTAC
TAGTAGATTAATTTGAATCCCGGGGCTAATAGGTTTGTAGGTTGACGGGT
ATTTCCGAGCTAggaatcgaaaatcgacccatAGATAGATTTTTTGCCAG
AGTTTGGTCCAGATTTTCTCAGATCTTTCCAAGTAAAATGTTTTCCATTT
TTATGGTTAAGGGACGTGTCAAATTCCCAACGTGTAACTTTTCTAATCTG
AGAGTGATCTTCAGTGTTAAAAAGTACCCTCTCGCTCGCACATAATCGGT
ACCATTTTTCCTAGCCCCCCAGGGTATGAACTGATTGTGGCTCAATTTTT
CTCTTCGATCCGCTCCTCAGAAACAAGCCTCTTtctttttgtcctttttt
aCGAGTACGGTAGTAGTAATAcagaaataaatttattttgtggtggaaat
tttttaattgattgattgattgatttgaaaGTGAGTCTTTCAAGTTTGTT
TCTGTGTCATGCTAAATGAAACCAACACTTAACTTATGTCTTGAACAATT
CTTCTCCTTCCagaatgaaagaaaaacaacgcATTCAGTGCCAATCACAA
TACGAACTTCCCCATTCTGATCCGCCGCTAGATCCTCAAGAAGCGCTCCC
GCAGCATCACGAATCGATCAAAGATTTCACCGAAGAGGACAATATGTCTT
ATGAAGATGAGAATATAAACGTTGTAAGATTTGACCACATAGAGGACCAT
TTACCACAAAATATTTTAGATTCGAGAAATGGAACTTATGATATGAACCC
TCCTCCCAACGTTCCGACATCTTACGTTTAAAGCTGCTTGTTAGTTGACG
TTTTTGCGTAACCGTATCtaaaatttcaaggaaaatgcTTCACGAACTTT
AAATAACAAATATTATGATAGAAAAAACTAGAAATGATTTTCGGGCAAGT
TATACCGATAATTATCGGTTTTTTTATTGGAAAATATAGCTCAATCACGT
CCAGACTCGtataaaaatacaaattattGATCTCGTATATAATGGAGTTA
TTTAATagaatcaaaaaagaaaattatcctAAATCAATAAACATCACTAC
AAGTCACTTTATAAAAAGACATCAAACATATTCAGAAAGATTTGGTTGTT
CTTTGGTTTCCATGGCAATGTCATTATGAGCAGTGGTTGGCGGTTCCGCA
AAAGTCACTTCCCTATCAACCCTTCTCGCTGTCGTTGTCGACTTTTTATT
GATGGTTGCCTTTTCTCTGATTGGTCCACAACAAATTCCAAATAAGGCAG
TGATAAAACCGAGACCGACTCCAATCCAACCTAGATACCAGGACCAGGCG
AATTTTGACGGCGACAAATCTCGTGTTGTTTCTTCGTGTTTGTTGTACGT
AAACAAGCCGACAGCGACACCTGTCGTAATAGATGCCGTCACTAGCAACA
ATGAAACGAAGGGAGGTTTAATGTATGACGTGAACCGACACAAGAAACCC
AGAATGGATGCCAAAGCAGCGGCTGCGCTAGAAATTATGGTCAGCGCACG
CTGTGATCGTAAAGCGTGATCACCCAATCCTGCGTCACGGTCGACGCACG
TTTTCATAAAAGCACCGATGGCTTGCTTGCATTCCCTCCACAGACCATAA
TTCGACTCGTCGGCCTCTTGGAGCCAGTGATCACCTCCACAACACGCCGC
CATTAACACAAACACAATGATAGAGCCAAGCAAAAGGTACGTAACCGAAT
GTTTCAAATGACAACACCTGCTCTCATTCGACATCCCTCTATTAGCAATT
TCCAAAGTTTTACACAGTTAGGAAGCTTGtcaattcttttgattttttaa
ttagattctAGTATTCCTTAGAAAACTGCTCTCAATACAATCTTCTAACT
TCTGTTGCTGTTTTAATGCCAACTTTTAGCCTACTACTGATATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007573-exon-sc0000078-1491911889:263444..263877 | TCONS_00007573-exon-sc0000078-1491911889:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007573-exon-sc0000078-1510915933:263444..263877 | TCONS_00007573-exon-sc0000078-1510915933:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007573-exon-sc0000078-1575043694:263444..263877 | TCONS_00007573-exon-sc0000078-1575043694:263444..263877 | Clytia hemisphaerica | exon |
| TCONS_00007573-exon-sc0000078-1491911889:264707..266089 | TCONS_00007573-exon-sc0000078-1491911889:264707..266089 | Clytia hemisphaerica | exon |
| TCONS_00007573-exon-sc0000078-1510915933:264707..266089 | TCONS_00007573-exon-sc0000078-1510915933:264707..266089 | Clytia hemisphaerica | exon |
| TCONS_00007573-exon-sc0000078-1575043694:264707..266089 | TCONS_00007573-exon-sc0000078-1575043694:264707..266089 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:263444..266089 + |
Blast
The following BLAST results are available for this feature:
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