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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007553 ID=TCONS_00007553|Name=TCONS_00007553|organism=Clytia hemisphaerica|type=transcript|length=1440bp
cagcataatataacaataggcagacactgtcctgatatgaaatatgtgtc
tgatatgaaacaggaacacttatgtaaaaataacccctttaattaatttt
ttagacGAATTATAAAAATGAGAGCAGCAGCAGTACCAGCGGACGAATTG
AATCACCGCGCGtcagaaaatgagaaaattttgctAATTCTAAATCCACA
TTTACCATCAGCTTTCAAAGCCAAACCGAAAATCAAACATGATTATTTGG
CTTCTGATGAAacagaacaaaagaaaagacaAGTTTCTTCGTTAAAAGAA
GTTGGCTCAAAACTTTGTGATGAGTTTTTGGAAAAACATGATCATTTCAA
TGCGGAAGAGATTTCACAAAGTTTTGGTGAAGAACAACACTACCAAAACG
TACTTTCGGACATTTACGATAAAATCGAAAACACatcaaaaccaaatcaa
aaGGAAGAGGCACCAGAAGACATCTATAAACGCTCTTTACATTTCATCAA
CGCCAAATATCAAGAAACCTGTCCCAAATGTTCTGGCCTTGCAAAACAAA
ACTCACGAAACATTTTGCTGAAGACCCTCTCTATCTATGATCAAGCGAGA
TTTTCTAAGAAAGCTTGTCTATCTTTCACCACGCAGCACAGAGGAAGAAT
TGTACAAATTACAATGACCTTGCCTTGCCCTAAATGTTGTTCGAAATCaT
TACCGGACGGGGAGTTCATAATTCGGACAACACCTTCTATCGAACATGAA
TACATTCTGAAAGATTTATTATTGACCAATCCACACAAATTCGTGGAAGA
ATGTCTTTGGAAATGGATTGATGACCATTCGTAAGCATTTTAGTTTGCTT
CTTCAAATGTTGTGTTATCACCCCCAATTACATCAGACTGTTTTGATTTG
TCTCTACTATTGAGCAATTGAAGAATACCTTTTGGTAACGGAATGCTGAG
TAATCATAAGAACGCTACTTGTATCTTCTTTAAAAACTTATGAAATTCCA
TGAACGAAAAATTGGGTCTGGATGACGGTTCTTATCTGAGGTAAATACTG
TGAGTGACGTCATTTATTTGTCTCGATTCATTTGGTACTTGGTTGAGTTT
TTCGTTTGTTGAATGGAAGGTAAGTGAGGCAAAAAACAATGAACTCGATT
ATGGTAATTAGACTGCATCCGAGACACAAGCCCAAGCTTCCACCAATTGT
TGCTGAAAGTTGAATGAAAAATTGCATGGTCAGCACATTTCTTGTCAAAG
AATTAGAGgtatcaatatttttatatttctaCCTTGTTGAAGCATTATTG
TTAGGGATTTTCAAAACTATAACATGCTATTTTAAAAAGAAGATCAGGCT
ggaattattttatgttttaattttctggTCAAGAAGTGTGTACATTTATT
GATCGCCTCAAGCTTTCAACTGCCGTGTACTGACGTGAAT Run BLAST on NCBI transcript from alignment at sc0000078:151037..153462+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007553 ID=TCONS_00007553|Name=TCONS_00007553|organism=Clytia hemisphaerica|type=transcript|length=2426bp|location=Sequence derived from alignment at sc0000078:151037..153462+ (Clytia hemisphaerica)
cagcataatataacaataggcagacactgtcctgatatgaaatatgtgtc
tgatatgaaacaggaacacttatgtaaaaataacccctttaattaatttt
ttagacGAATTATAAAAATGAGAGCAGCAGCAGTACCAGCGGACGAATTG
AATCACCGCGCGtcagaaaatgagaaaattttgctAATTCTAAATCCACA
TTTACCATCAGCTTTCAAAGCCAAACCGAAAATCAAACATGATTATTTGG
CTTCTGATGAAacagaacaaaagaaaagacaAGTTTCTTCGTTAAAAGAA
GTTGGCTCAAAACTTTGTGATGAGTTTTTGGAAAAACATGATCATTTCAA
TGCGGAAGAGATTTCACAAAGTTTTGGTGAAGGTATTATTAACCCTTTCA
GTGTTGGCAAATGCCGACATGAGCACTTTCCATCTATTTGCCAATGACGG
CATTTTGCCGACATGAAGTTTATTGAAAGTTCGATTTCGAACTAGATTTC
ATTAAAATGGCACAGTTGATAATGAAACATATTTCAAAGATGTGTTTCAT
TCATAGTTATACattttcaactcaaaattatattttacagAAAATGAAGC
TAATTGTGATAGTTAACTCTGTGGTCAATCATGTCTGCATACTGAtgtct
ggcaaataggtcgaaccttcatTTTTCCCGTGGAAACATACATACTTTCC
TCTAACACTAACACGACTTAactttttagcattttaaaagaatttatttc
AGTGGAAAATAGGTNACTAACACGACTTAACTTTTTagtattttaaaaga
atttatttcagtggaaaataggtcgaacctttaAAAAACGCATAGTTCAA
GGGTTAAGgagttttatcttttttccttatatttgtAACCATAAGTCATG
GTTGTTTTAGGTTTTGTAGATAGCCCGGGTACTTCTACAGTAGAAGATAT
TCTTTCGATTGTATTCACGAGTCCATTTGGTTCGTAGACCCCTGATTTCG
GAATATGACACCTTAGCTATTTCCTTTTTATTCATAAACATTTTGCGTTC
TGCTTGAGTTTCGGACGGAATTTTGATTATAGCTCGAATTTCTTAAACTT
TAAAACCAATACAGACCAATAGCTTATTTGTTGATAACACTACCGAGAAA
CTTTGACTCGAAGTcatattattgaaaatattgaaaatatttgtcttttt
tttcctCAGAACAACACTACCAAAACGTACTTTCGGACATTTACGATAAA
ATCGAAAACACatcaaaaccaaatcaaaaGGAAGAGGCACCAGAAGACAT
CTATAAACGCTCTTTACATTTCATCAACGCCAAATATCAAGAAACCTGTC
CCAAATGTTCTGGCCTTGCAAAACAAAACTCACGAAACATTTTGCTGAAG
ACCCTCTCTATCTATGATCAAGCGAGATTTTCTAAGAAAGCTTGTCTATC
TTTCACCACGCAGCACAGAGGAAGAATTGTACAAATTACAATGACCTTGC
CTTGCCCTAAATGTTGTTCGAAATCGTAAGTTGATTGAGATTAAAGGGAT
ATGATGGGACAATTTTAGCTTTTGCTTGTTAGACATATTCCCTCCATTAT
TCTAAAATCAAGATCTAATgggaaataaaacaaaacaacaaattatattg
tatgattttcattttctttcgctttcgatttcagaTTACCGGACGGGGAG
TTCATAATTCGGACAACACCTTCTATCGAACATGAATACATTCTGAAAGA
TTTATTATTGACCAATCCACACAAATTCGTGGAAGAATGTCTTTGGAAAT
GGATTGATGACCATTCGTAAGCATTTTAGTTTGCTTCTTCAAATGTTGTG
TTATCACCCCCAATTACATCAGACTGTTTTGATTTGTCTCTACTATTGAG
CAATTGAAGAATACCTTTTGGTAACGGAATGCTGAGTAATCATAAGAACG
CTACTTGTATCTTCTTTAAAAACTTATGAAATTCCATGAACGAAAAATTG
GGTCTGGATGACGGTTCTTATCTGAGGTAAATACTGTGAGTGACGTCATT
TATTTGTCTCGATTCATTTGGTACTTGGTTGAGTTTTTCGTTTGTTGAAT
GGAAGGTAAGTGAGGCAAAAAACAATGAACTCGATTATGGTAATTAGACT
GCATCCGAGACACAAGCCCAAGCTTCCACCAATTGTTGCTGAAAGTTGAA
TGAAAAATTGCATGGTCAGCACATTTCTTGTCAAAGAATTAGAGgtatca
atatttttatatttctaCCTTGTTGAAGCATTATTGTTAGGGATTTTCAA
AACTATAACATGCTATTTTAAAAAGAAGATCAGGCTggaattattttatg
ttttaattttctggTCAAGAAGTGTGTACATTTATTGATCGCCTCAAGCT
TTCAACTGCCGTGTACTGACGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007553-exon-sc0000078-1491911889:151037..151418 | TCONS_00007553-exon-sc0000078-1491911889:151037..151418 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1510915933:151037..151418 | TCONS_00007553-exon-sc0000078-1510915933:151037..151418 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1575043694:151037..151418 | TCONS_00007553-exon-sc0000078-1575043694:151037..151418 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1491911889:152246..152561 | TCONS_00007553-exon-sc0000078-1491911889:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1510915933:152246..152561 | TCONS_00007553-exon-sc0000078-1510915933:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1575043694:152246..152561 | TCONS_00007553-exon-sc0000078-1575043694:152246..152561 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1491911889:152721..153462 | TCONS_00007553-exon-sc0000078-1491911889:152721..153462 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1510915933:152721..153462 | TCONS_00007553-exon-sc0000078-1510915933:152721..153462 | Clytia hemisphaerica | exon |
| TCONS_00007553-exon-sc0000078-1575043694:152721..153462 | TCONS_00007553-exon-sc0000078-1575043694:152721..153462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:151037..153462 + |
Blast
The following BLAST results are available for this feature:
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