TCONS_00007546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007546
Unique NameTCONS_00007546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007546 ID=TCONS_00007546|Name=TCONS_00007546|organism=Clytia hemisphaerica|type=transcript|length=1621bp
CTCTTAAGAGGACTGCAactaaaatcttcaaaattttaaagattgcTTCT
GTGCTTATCTGAGAAAATACGGTATGCCTTAATTTCATCCTTTAAACAAA
GCTAACCTTCTCtatatgtttcttttttttcaggacaGTCCCGAGTTCGC
CCGAATCATCGCAATGGTTGATCCTAATGGTTCTGGTTACATCACCTTCC
AAGCTTTCTTGGACTTCATGACTCGAGAAATGGCTGATACTGATACCGCT
GATCAGGTTATGGAATCCTTTAGAATTCTCGCTGGTGATAAGCCATACAT
CACAGCCGATGAATTACGTAGAGAATTACCGGGAGAACAAGCTGAATATT
GTATCGCTAGAATGTCTCCTTACGCTGGTCCAGACGCTGTTCCTGGTGCG
TTAGACTACAGATCTTTCTCGTCAGCTCTTTACGGAGAGAGCGATCTATA
AGAAGACGTTCCTAAACATAATTTATACGTTCCATGGTTTCACACACCCG
CATACAccattgattcgatgtttgtcCATGGTCAGCTTGACCACGTTTGC
GTCCGAAATTGTTTAACAtttaaacaataacaaacaCTATATGATACGGA
CAACAGAAATTTCTTACACATGGGGGCATAATAATAATATCGATATAAAC
ATACTACCATACGTAACGTTACACAACATACGACTGATCTATCGTacttt
ttgttcaaaattgaaaatccttttctaaatgtgttttatataaaaattta
gattgggaatttttttaaatagattaTTATAAAATTTGTAATATTTGATT
GGCCTTTATTTTGTATCTTCAGTTATCGTTTTATTTTTCGTTtcttcaaa
tgtttttaaaatcttgTTGGTATTTTTCTGTTACAATCCTCAACTGAAAA
GCCCAGCTTTCTTCTAAAGAAACAATCCTATCTTTCGTAATCCCAGGGTA
TTCTGAAAGCGAAATTGttcttttcatattttcattttatatttattttt
gttcgaaggggaaatgaaaatattgaaaaagggTGTTCCTGTTCGCTTGT
TACACTGTGATTTGTgtatagaaagaaaaaaatttagaaaaacttgctcg
aaaaaaagaataaatttaataaatttattgttgaatCTTATGCATATTTT
AactaaaagaaaattattttaatccgTCAATCACTTGTTTTTCGTTGCTG
TGTTTTTTTGCTTNACTGAAAAGCCCAGCTTTCTTCTAAAGAAACAATCC
TATCTTTCGTAATCCCAGGGTATTCTGAAAGCGAAATTGttcttttcata
ttttcattttatatttatttttgttcgaaggggaaatgaaaatattgaaa
aagggTGTTCCTGTTCGCTTGTTACACTGTGATTTGTgtatagaaagaaa
aaaattagaaaaacttgctcgaaaaaagaataaatttaataaatttattg
ttgaatCTTATGCATATTTTAactaaaagaaaattattttaatccgTCAA
TCACTTGTTTTTCGTTGCTgtgtttttttgctttttttctacCGGGCTTA
TAAATACTCTGTTTTGTGTTTTTTGCTTACGGACCAAGCTGAAATATCCT
GGGGGTACCCGAGGTTTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00007546-protein

>TCONS_00007546-protein ID=TCONS_00007546-protein|Name=TCONS_00007546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MFLFFQDSPEFARIIAMVDPNGSGYITFQAFLDFMTREMADTDTADQVME
SFRILAGDKPYITADELRRELPGEQAEYCIARMSPYAGPDAVPGALDYRS
FSSALYGESDL
Run BLAST on NCBI

transcript from alignment at sc0000078:70333..72318+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007546 ID=TCONS_00007546|Name=TCONS_00007546|organism=Clytia hemisphaerica|type=transcript|length=1986bp|location=Sequence derived from alignment at sc0000078:70333..72318+ (Clytia hemisphaerica)
CTCTTAAGAGGACTGCAactaaaatcttcaaaattttaaagattgcTTCT
GTGCTTATCTGAGAAAATACGGTATGCCTTAATTTCATCCTTTAAACAAA
GCTAACCTTCTCtatatgtttcttttttttcaggacaGTCCCGAGTTCGC
CCGAATCATCGCAATGGTTGATCCTAATGGTTCTGGTTACATCACCTTCC
AAGCTTTCTTGGACTTCATGACTCGAGAAATGGCTGATACTGATACCGCT
GATCAGGTTATGGAATCCTTTAGAATTCTCGCTGGTGATAAGGTGactat
ttgttttaaaatttattactttttttaaacGCAACCCTTACCATTTGTAC
GCATCAGAGTTAATGTCTTTTTCGCGTAAGTTTCGTTTTTCAATTACAGT
GTAATTCGAACTGCTATAATTCGAAAACTCACTTAATTCGAACAGATTTT
GTGATCCCCTCAGAATTTGCCTTGAAAACCTTACAAgaaaacttctataa
ttcgaaaaaccatgtaattcgaaaaaaattctcggtcccttgagaattcg
aattacatgagttcaacAAACGAAACCTTGCGACACGCGAGACAAATCTC
GATATTATCTATATTTTAATAAACACTGGTGTTGATATATTCATCCTTCC
GTTTCAGCCATACATCACAGCCGATGAATTACGTAGAGAATTACCGGGAG
AACAAGCTGAATATTGTATCGCTAGAATGTCTCCTTACGCTGGTCCAGAC
GCTGTTCCTGGTGCGTTAGACTACAGATCTTTCTCGTCAGCTCTTTACGG
AGAGAGCGATCTATAAGAAGACGTTCCTAAACATAATTTATACGTTCCAT
GGTTTCACACACCCGCATACAccattgattcgatgtttgtcCATGGTCAG
CTTGACCACGTTTGCGTCCGAAATTGTTTAACAtttaaacaataacaaac
aCTATATGATACGGACAACAGAAATTTCTTACACATGGGGGCATAATAAT
AATATCGATATAAACATACTACCATACGTAACGTTACACAACATACGACT
GATCTATCGTactttttgttcaaaattgaaaatccttttctaaatgtgtt
ttatataaaaatttagattgggaatttttttaaatagattaTTATAAAAT
TTGTAATATTTGATTGGCCTTTATTTTGTATCTTCAGTTATCGTTTTATT
TTTCGTTtcttcaaatgtttttaaaatcttgTTGGTATTTTTCTGTTACA
ATCCTCAACTGAAAAGCCCAGCTTTCTTCTAAAGAAACAATCCTATCTTT
CGTAATCCCAGGGTATTCTGAAAGCGAAATTGttcttttcatattttcat
tttatatttatttttgttcgaaggggaaatgaaaatattgaaaaagggTG
TTCCTGTTCGCTTGTTACACTGTGATTTGTgtatagaaagaaaaaaattt
agaaaaacttgctcgaaaaaaagaataaatttaataaatttattgttgaa
tCTTATGCATATTTTAactaaaagaaaattattttaatccgTCAATCACT
TGTTTTTCGTTGCTGTGTTTTTTTGCTTNACTGAAAAGCCCAGCTTTCTT
CTAAAGAAACAATCCTATCTTTCGTAATCCCAGGGTATTCTGAAAGCGAA
ATTGttcttttcatattttcattttatatttatttttgttcgaaggggaa
atgaaaatattgaaaaagggTGTTCCTGTTCGCTTGTTACACTGTGATTT
GTgtatagaaagaaaaaaattagaaaaacttgctcgaaaaaagaataaat
ttaataaatttattgttgaatCTTATGCATATTTTAactaaaagaaaatt
attttaatccgTCAATCACTTGTTTTTCGTTGCTgtgtttttttgctttt
tttctacCGGGCTTATAAATACTCTGTTTTGTGTTTTTTGCTTACGGACC
AAGCTGAAATATCCTGGGGGTACCCGAGGTTTTTTT

Coding sequence (CDS) from alignment at sc0000078:70333..72318+

>TCONS_00007546 ID=TCONS_00007546|Name=TCONS_00007546|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000078:70333..72318+ (Clytia hemisphaerica)
atgtttcttttttttcaggacaGTCCCGAGTTCGCCCGAATCATCGCAAT
GGTTGATCCTAATGGTTCTGGTTACATCACCTTCCAAGCTTTCTTGGACT
TCATGACTCGAGAAATGGCTGATACTGATACCGCTGATCAGGTTATGGAA
TCCTTTAGAATTCTCGCTGGTGATAAGCCATACATCACAGCCGATGAATT
ACGTAGAGAATTACCGGGAGAACAAGCTGAATATTGTATCGCTAGAATGT
CTCCTTACGCTGGTCCAGACGCTGTTCCTGGTGCGTTAGACTACAGATCT
TTCTCGTCAGCTCTTTACGGAGAGAGCGATCTATAAatgtttcttttttt
tcaggacaGTCCCGAGTTCGCCCGAATCATCGCAATGGTTGATCCTAATG
GTTCTGGTTACATCACCTTCCAAGCTTTCTTGGACTTCATGACTCGAGAA
ATGGCTGATACTGATACCGCTGATCAGGTTATGGAATCCTTTAGAATTCT
CGCTGGTGATAAGCCATACATCACAGCCGATGAATTACGTAGAGAATTAC
CGGGAGAACAAGCTGAATATTGTATCGCTAGAATGTCTCCTTACGCTGGT
CCAGACGCTGTTCCTGGTGCGTTAGACTACAGATCTTTCTCGTCAGCTCT
TTACGGAGAGAGCGATCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004267XLOC_004267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007546-proteinTCONS_00007546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007546-exon-sc0000078-1491911889:70333..70624TCONS_00007546-exon-sc0000078-1491911889:70333..70624Clytia hemisphaericaexon
TCONS_00007546-exon-sc0000078-1510915933:70333..70624TCONS_00007546-exon-sc0000078-1510915933:70333..70624Clytia hemisphaericaexon
TCONS_00007546-exon-sc0000078-1575043694:70333..70624TCONS_00007546-exon-sc0000078-1575043694:70333..70624Clytia hemisphaericaexon
TCONS_00007546-exon-sc0000078-1491911889:70990..72318TCONS_00007546-exon-sc0000078-1491911889:70990..72318Clytia hemisphaericaexon
TCONS_00007546-exon-sc0000078-1510915933:70990..72318TCONS_00007546-exon-sc0000078-1510915933:70990..72318Clytia hemisphaericaexon
TCONS_00007546-exon-sc0000078-1575043694:70990..72318TCONS_00007546-exon-sc0000078-1575043694:70990..72318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:70333..72318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
288.118	266.088	257.319	238.554	66.107	46.6426	108.216	116.915	86.7462	114.425	83.1898	62.8016	193.056	165.921	132.315	159.158	149.424	155.861	199.252	206.239	90.3947	97.0816	189.389	160.318	65.526	74.2501	223.287	237.857	288.973	319.791
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR014837EF-hand_Ca_insen
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00007546 vs. Swiss-Prot (Human)
Match: ACTN1 (Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.077e-47
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 2 
Query:  131 QDSPEFARIIAMVDPNGSGYITFQAFLDFMTREMADTDTADQVMESFRILAGDKPYITADELRRELPGEQAEYCIARMSPYAGPDAVPGALDYRSFSSALYGESDL 448
            Q   EFARI+++VDPN  G +TFQAF+DFM+RE ADTDTADQVM SF+ILAGDK YIT DELRRELP +QAEYCIARM+PY GPD+VPGALDY SFS+ALYGESDL
Sbjct:  787 QGEAEFARIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITMDELRRELPPDQAEYCIARMAPYTGPDSVPGALDYMSFSTALYGESDL 892
The following BLAST results are available for this feature:
BLAST of TCONS_00007546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTN14.077e-4777.36Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2[more]
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