|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=transcript|length=1810bpRun BLAST on NCBI protein sequence of alpha-actinin >TCONS_00007545-protein ID=TCONS_00007545-protein|Name=alpha-actinin|organism=Clytia hemisphaerica|type=polypeptide|length=414bp MADEEHYGYFYGEEEKGLLDPAWERQQKKTFTAWCNSHLRKVNVQIEEITRun BLAST on NCBI transcript from alignment at sc0000078:62048..69918+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=transcript|length=7871bp|location=Sequence derived from alignment at sc0000078:62048..69918+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:62048..69918+ >TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=CDS|length=13695bp|location=Sequence derived from alignment at sc0000078:62048..69918+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007545 vs. Swiss-Prot (Human)
Match: ACTN2 (Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 278/391 (71.10%), Postives = 341/391 (87.21%), Query Frame = 3
Query: 333 LLDPAWERQQKKTFTAWCNSHLRKVNVQIEEITEDFRDGLKLMLLLEVISGDRLPKPEKGRLRFHLVSNVNKALDFIVSKGVKLVGVGAEEIVDGNLKMTLGMIWTIILRFAIQDITVDEFSAKEGLLLWCQRKTAPYKNVNVQNFHMSFKDGLAFCALIHRHRPELIDYDKLSKDDPMYNLNYAFDVAEKHLDIPKMLDAEDMVNQVKPDERAVMTYVSCYYHAFSSSQQAETAAKRILKALNVNQGNEKAMEDYENLASDLLDWINKKIPEFEDRTTDNSLANMQEKLNDFRNYKGKEKPPKVDDKSRLENLFNTLQTKLRLSNRPVYMPAEGKMISDIDKAWKDLEQAEKDFQDWILSQLRKLERLDHLAQKFKLKCDTHEAWAHGQD 1505
LLDPAWE+QQ+KTFTAWCNSHLRK QIE I EDFR+GLKLMLLLEVISG+RLPKP++G++RFH ++NVNKALD+I SKGVKLV +GAEEIVDGN+KMTLGMIWTIILRFAIQDI+V+E SAKEGLLLWCQRKTAPY+NVN+QNFH S+KDGL CALIHRHRP+LIDY KL+KDDP+ N+N A ++AEKHLDIPKMLDAED+VN KPDERA+MTYVSC+YHAF+ ++QAETAA RI K L VNQ NE+ ME+YE LAS+LL+WI + IP E+RT + ++ MQ+KL DFR+Y+ K KPPKV +K +LE FNTLQTKLR+SNRP +MP+EGKM+SDI AW+ LEQAEK +++W+L+++R+LERL+HLA+KF+ K THE WA+G++
Sbjct: 31 LLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKE 421 HSP 2 Score: 114.775 bits (286), Expect = 2.055e-26 Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 1513 LDKINHD---VQEAMIFENPHTPYSMEVLRIRFEQLLTGITRNINEVENQILMRDSIGISEEQMKELRTSFNHFDKNKNNQLDYKEFKQCLVSLGHSM 1797
+DK+ D +QEA++F+N HT Y+ME +R+ +E LLT I R INEVE QIL RD+ GI++EQM E R SFNHFD+ KN +D+++F+ CL+S+G+ +
Sbjct: 692 IDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDL 789 The following BLAST results are available for this feature:
BLAST of TCONS_00007545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.