TCONS_00007542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007542
Unique NameTCONS_00007542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007542 ID=TCONS_00007542|Name=TCONS_00007542|organism=Clytia hemisphaerica|type=transcript|length=1349bp
AAAGCAGGTTggtcaaaaaaattgtcaaagCAACATCATCAAAAGTGTAT
AATTCCAAATCGACCAAGCAAAGAACGCAGAAGTTCAGGATTTTTGCAAA
GATTCAGAAAAGcatGTGAGAGGTTCGACGAACGAAGGCAGATAAAAGGT
GTGCGAAGCTCTGGAATTTtacgcagaaaaaaaaaacagcatcGGGAAAG
AGATCGTATTGAGACGCGGAACGAAGACAGAAGATGGCTCTTGATTTCGG
CGCCGGTTGCCTAGGAGGGGCTGCCGGTGTGGTAGTAGGACAACCTTTTG
ACACAGTAAAAgTTCGTTTACAAGTACCTAAAGCTTCGTACCGTGgcgtg
tttcattgtttcaccACCATGGTCAAAGAAGAAAGCATATTCAGTTTATA
CAAGGGAATGACACCCCCACTACTCGGAGTGGCTTTTCAAAATGCTATTT
TATTTGGATTGCAAGGATATTTCCGACGTTTCGTTGATGACAGTGTGTCC
GGTGAAATGATCGCCGGAGCACTAACGGGAGCGTCGCAAGCTATTGTTAC
AGCGCCTATCGAACATGCTAAAATTAAACTACAAATTCAAGGCACAGGAT
GTCCCACACAGAACACACGGAGATATAAAGGACCTATTCAAACGATTTTA
CAAATCAGACGTGAGAGTGGTACTAAAAGTTGTTTTCGTGGACTTCTTGG
TGTTGTGTTGAGAGATATGCCAGGAACGGCTATTTACTTcggatcttttt
cttttttgaaccaatttttcatccccgAAGGTGGCGATATAAATTCTTTA
CGGCCCGCCACGTTACTTTTTACAGGAGGACTTGCAGGCATGCTTTCATG
GGCGGCTTTTTATCCGATAGATGTGATCAAAACACGTATACAAGCGGAAG
GATTGCAACCGCACGGGCGGTATGCTTCATATACGGACTGCGCTGTTGTC
AGTTTTAAAGAGGAAGGGTATACATGGATGACAAGAGGTTTTGGTGCAAC
CATGTTACGAGCTTTCCCTGTAAATGCGGCTATTTTCGCTACCGTAACTT
TGATCTATCGATATATGAGATCACAATCGAGTGATGAATATGATGATTGA
TTGgtgatttgtgtttttttctatgttttttttttggctttcaatgtatc
aaattattttgttatatttCTGGTTAGACTAAGGCTTAGTGCGATTGttg
gtattttttttactttttttttctctgataaaaacgaaatttATTACATA
CTTCATTACGGCATTTTTTGATACCTTTTGTAACTTTTATACATTATCAT
TAATTTTATATccgatttatttttttgcaatacAATGATACAATTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000078:31671..40149+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007542 ID=TCONS_00007542|Name=TCONS_00007542|organism=Clytia hemisphaerica|type=transcript|length=8479bp|location=Sequence derived from alignment at sc0000078:31671..40149+ (Clytia hemisphaerica)
AAAGCAGGTTggtcaaaaaaattgtcaaaggTAATGTCTGTTAAAAAGAT ACTTGCTTGGGTTTATGCATTATGGTGCAAAAGATTGACTTAGTGCGCTT GTTAGGGTTTTTGGAAGTCTCGTAATTAGTTGATTATTGTGCATTTTCTT TCTCATAGTGTATATATGCTGTAGAAATGAAATCATATGATTGATTAGTA CTAAGTTGAACACTTATTAGTTCTCAGGATATTAAAATTCCATTTAAGAG TATAGCGCTGTTAATACGCTGAACTATATTTGTCATATTTCACATTCATA ACTACTTCTTATTTTTAGTACTAAGAAGATTATCATAAGTTTTTCGTCAT TGTTAAACTTGTACTTAAGTTGTAGATTTCTCGTTCAAAGTTATTTATAT TAGGTTGACGTACTTTCTGTCCCCTGTACAATTTCGATCTCCTTTACCTT ATTTTAGCAACATCATCAAAAGTGTATAATTCCAAATCGACCAAGCAAAG AACGCAGAAGTTCAGGATTTTTGCAAAGATTCAGAAAAGGTAATTCCATA AATTTCTACTTTCTCTTTGAAAATTGTGCAGTTGGATTTATATTAATGGG TCAATGTCCTTTCATACATTATGTTTTTGCGTTGAAAGCTCAATGAAtat ttgacattattttttttagcttagGGCCTGGGTCATCAAGGGATAGAATA TGCTTTAAAAGGTGAAACTCATAAGACGAGATTTCGTCTCCAGGTTCCTT CTAATCTtgtaacagatcatccattctgcgcatacCACGCTCTTCTCTAA TGGGATGTGACGAATATGAAGATCTGCATTCAAAACTGCGTTGTCTTTta cttgaaattgaaagtgaaagcGATTTGTTTCTGACTTATATGTTTATGAA TGACGTTTGTTTTGGTGTGATTGTATTACTTTAGCAAGACCACGCTTAAA aggctcatttaatattcatcccaaatctggacgaaaaagatcaaagcggt GTGCCAACCTGGGTAGATTTACTTATGGCCCATGAGCCAtggcctttaga gtgaatacgtgTTAGCGCGGAGTTATCAGAATCTGCTCGTAGATTCGATA CCTTCTGTCAAACTTTATCGGCCATTTCACTCTATCTTTCTTATGCCTTG AGATGGATTCTCAAAACCGCGTTGAGGTAGCTATTTAATATTTAGCATAA ATTGTACATCCTCTAACATTTTATCTTGAGATCTAGAAACTCTTAATTGT GGAATCATATTAACCCTTCTATCTTctctacatttttttttaaataaagc atGTGAGAGGTTCGACGAACGAAGGCAGATAAAAGGTGTGCGAAGCTCTG GAATTTtacgcagaaaaaaaaaacagcatcGGGAAAGGTATTTAATTGTT GCTTTACTTCTTTTGattcttttgaaattatattacgTATATGGCATACT AATTATCGATTTATAGCCTTCGAGAACTCCATTACTTTGTCTCTTCTAgt gatttatttttcataagaaactGTAATAATCCTCAGTGATTTTTTACTGT AAGATTTTACCAGGAATATTATTGTTGAAAGAATCGTTTGTTTTGGAGAC CTAGccagtttcaaaaataaatatttgtaACCTTCTCTCAACTTGGTTAA GCGTGTGATTTAGATTTTCTTacaacaaaaaatgttcttGTGAAAAGCGT TGTGAATTAGCGAACCTTCACTCCATTGTCAGTTGTCACTCAAAAGAAAA CCTATTAAATGTCGTGGTCAGATTTACTAAGAAATTTCTTTACGAATGAA TAAATGGCTTAGCCTTGTGAGTGAAGCCGTCTATTGGTTCTGATAATTAA TTTCTCTTGATTTGAAATGCAGTTATTAAAAATGTGCAaaggaaagaaat atttttttgtccaCGAGAAATTTGGTTATAGAGCACAGGTTGTGGTTTTT CGTTGTCACACGCGTCTTGAGCTTTCAGTTGATTTTGTTCTTTTTGCCTC CTTGTCGCTTTTTGATTGGTAGTTCTGAAgggaaaatgaagattgaagaT TTATGTGTCAATGATTATCTTTACCTCGATGTCAGATGAAAACTGGTAAG GTTTCTTTGTTGTTAGGTCGCGGCCCCTAACAAAAACGTTGGTTTTCAAA AAGTTGGTCACgtacattttgaatttttttactttatttttgaaacttta gcaaTCCGCTGGCCATGGTCTATATTGACTGCTGATCTCTCTTTGTGTTC GAAACGCCCCTGTCTCGCATTCACGTTAAATACCTATTTACTTAACCAAT GGGGAAGTAGTCGCCTCTGTATACATTTTATTTTCCCTCCGGTCGCTACC CAACCGGAGCTATTCTACTGTTTTGGAGTTTGAATTATAGGCCTGTGCAA AAACTATGCAGCATTTCTCAATAAAGATAAATGTATTGGTTAGAGAATAC CCACTGCTCAGGCACTTCGTTCTTTTTTCGATTGTAGCAAGCCTTTTTCA CCAAGAAACGAAGGAATTTTATTTGACCCATTGGATgcagtttttctttc tttctcactttGTCAATCCGTTACACTTGTTAAGAATGTGATAGAGATCT GTAGGGTCATTCAAAAATTACATAATTCTGCCTATCTTATCTCAAGCTTG TTCCTCCTTTTTCTACTTTCTGATAAAATCTTTGTCTGATGTTTAACCCG ATATCATTGAAAAGTTTTTCCGGGTTTTAGAATGAGATTTCCGGTGCAAT TAGACAGTAGTTCGGGACGTTCGATAACGGGTCGACAACTCACTCAATTA GAGTCCTATGAAAGGCTAATAGCATCTAAATGCTTTGAAATCAAGTTAAT GAAAATACCTCATGCTATCCATTATTTTTGTTAAACATTGAATTGATATC TATTCAAACTGACTAGAATTTTGATCCTTAATTGCATCGCGTGAAACTGT TTTATGACACCCTACTTACTATACAGTAAGTTAATCTTGGCAACTCCTCT TAATGGAGCTGTTACCCTTAGTAACATATTATACCTATTAGAAAtagctt ttttgagattttgcaaCCTGTTTGTTGTCGTTACCAATCCAATACCTTGA ACAGGTTGTTTTAATCcctaatctttgtgtaaacgaGTCCTCAAAATCGT TTTCGAAATCTTTGCTTCTCCCATCATAAAGAATTTAATTAGTCTGGATT TTGGTGTTGACaacctttttaaaattgtttatcaTTTGATGTCGATACAT TTACTAGCTACACTCGCCTCTTACACACCTTTTTCATTAAGAGTTGGAGA AGCTTTTGTAAGTTCGTTGCTAAttggtttattttgctttggtGTAACTG AAACAGGCCGTTTAACATGATCATTTAGTAGTTTATTTTGGATAATTGAT GCATTTATAACTGAATGCGGATGTTCCAAAAATGTTATTGCTGGCTTTTG ATTGATATTGGAAATCTTTGTTGCTGGGCGTGTCACTTTCATTTTGTTCG GTTGTTTTCTGTTTTAGAGGGTAGAGAAGTGTCATATTTGCGCAAGAAAT CAGAGAGAGATTTTCAAAGGGTTTTCAAAGATCTTTCAGAGATACCACGT GGAGTAGCCCTGTCTACTGTGGACCCTCGTATATAAAAGACAGATCTTCA ACCAAAAAGGCTTAATCTTAGAAGATCGGAATGCAAGACTGCTCTGCTCT CGCTCTCCTTCAACTAAATTGAAATCATTTTGTACTTAGTATACTATTTC TAAACTTGTTCGTTGAAAAAAGCATAAGAATTTCAGTGATGGGTCTGTGA AAGTATACAATCAACTCTACGTATGTAACAACAGTAAAAGTCACGTTTTA GACTTCAACTGAATGTGGCGTTAAAAAATCAATGTGGAGCATGAAAGCGA GGTTTTCGGAAAAAGATAATAAAGAAATAAATTATTTACAGCTCCTTCTC ATGCCAATAGAATCATCcgaaaaatatttcgttgaGGGGGAACCTAGTTT TACTAGTGAAAATTCAAAAGGCTTTTAATTGATTTTCCATCAGTTTCTTT TTTATGACGAACGCATACATACCGCAGTCTTATTctgttttttatcaata ttccAAGATTTTACTGTCGATTTACATAACAGAGTATTGAACTTTATATC TACtcatgaaaaataatatttcgGGTAAAGATTCATCTTAAATCTGATTA AAATGGTAAACTCTAAGAATTAAAAACCTTCTTAAAGAAAAGAATGGTAT TTTTCTATATCTTTGTATGTTACGTAACAGGACCTCTGTATGGTCAGCAT AGTCATTTGTTAAAACAAGGGGCAGCGGAACAATActagggacaagctgg agtttttacaagctcttatttgatttagttggtcgttaaccagtaataaa acaattttgttactttttctaaagaacgcgtcatctctatcacttcaaat gaacaattagtgaagtatcttgtaaaaactccagctcatccccaaTACTA GAGGAACCAACTTCGCCAAGGGAAATTTGTCATTCATTTTGTTTAAAAGT AGGGTGACAATCACTAGCTAAAGCATTGTGTGGTAGCTTTTTAGAAGTTT TTTGAAACACTCCTCTAAGGGAATAGTTTTATTCTCGAACGGAAGCAAGG GCAACTTAACATCAAACGATCATCTTATCGTCAGTCTTAGTGAAAAATCA TAGGCCATTTAGCAGTTGCAAAGCGTAacgggtaatcaggaccactgcgc gctaatgacaACTTACTATTAGTccgaaattttgaagatttttgagcaac cggtcctgattacccatgattcatttcgactgtgaaatggcctttTTGAA ATCGTACAGGTaaaccattttgaattttacttAAAGACAGTATTTCGCAT GTTGTTCAGGCATTACTTATTGCCGAAACTTTTCCTATAGAAACTGTCAA GCTAgagagcttttttgaaggggtgTGAATGGGGTGCGACGTCACGTGAc gttgatgaattttttttggaagttTGACGCTGTAAACAATTAGACTTTGT TGAAGATTCTGTAAGAATATCGTCCTTCAATGCATGAGGAATCAAGGTTC AGTCAATGTCAAAGGAGAAGATAAATGTTTTCTGAAAGAAAGATTTGTtg aattcttaatttttaaCAATGAAGTGAAAGATTTTCATGTTATCGGTATG AATGAATATTTGACTGGAACATTTCTCAACAAATAAGTTGAATGTCATAA CGTTTACCATGTGACTAACCATTGTTGGCGACAAGAAAATACTCATTCAA TCTTTCATCAATACTGATTGAGGAGGCACCATAGTGAAGGATCTTCACCT CATCAATAATTGAAGAAAACTTTCTAATTTTACCTTCCAATTCTCAACTA CCCTTTCAcccttttcatgaaaatttaatgaagaaatactttcatccttt ctttgtgtgtttggaatatattcatttatttttgaatttttcatactTTT CCTTTCTCTCAAATTTGGACAACTTCAGGATTACTTTACATCGCGATGAG GAGAGACAGATACGCCTTGCTGATATACTTTCATTCTTTTGTGATAGACC AGTTGAGGCTTGAAGTTTTCGAACAAatcatcttctttttgactacAGTA TAAGCCTTTTTGGGATCAAAAACACACATTTTTCCGTGAGGCTTCCAGAG CCCTATTTAGTACGCTGAGCGTGACACAAATCATAAAGAGtgtgcttttt tgaaaatctttgttttttcagcGTGACGAGATGAATTGCATGATGGGAGG GGTTCTCCCCTTGTTCTATCCATCTTTAATTGGTTATAATTGATTTTAAT CGACCAATTCGACGCCAAGTTGAATCCCTAATTGGATTGCTTcttttttc cttgaaaacagCTTGTTTACATCGTTGCACTACCGGGAGTAAACTTGATT ATAAATCATTAAATATCAGAAATCCTCAGCAAATCCTACGACAGTATCAA TTATCTCAGGACATTTTTtacttaaattttcattttttctttttatgttg ATAAAATCTAGAGATCGTATTGAGACGCGGAACGAAGACAGAAGATGGCT CTTGATTTCGGCGCCGGTTGCCTAGGAGGTaagtcttttttcaaatttct tttatctAAGGGCATTTTGCCAATACCAATACTAAGAATCTCTTAATATC AAGGTGAAACGATAAACGATGACGGCGATAAACGTTGCCCTCACAAGCAT ATCTGCCCTCACAAGCATATCTGGGCCCAGATATTGCAAAGGTTTATGCT AAGCATTACCTTGAGCCTACTTTTTCCGTTTTTTGATGGAATTTTACTGA TTTTAAGAATTTCCCAGAACTTTGGCTTATGATATAAGCATTTTCAGCCT TGTCAATCTCTCGATCTAAGCATCTCCgagaaagttttttaaaatgtaCC TTAATTTAATCTAATTTAAATTAACCTATTAATAGGTAAGCCTGAAAAAT TTCGCTCGAGCCCTGATGATATTCCAGCAACTGTTGAGTAAAATTTATAT TGCCAAAAAATAGTCGATATTGAGAGAAAGATCGTAAAACCAATGGCTAA CGAGAAAGCGCGACAAAGGAACTTTAAACTGAatattttcgttttttctt TACAGGGGCTGCCGGTGTGGTAGTAGGACAACCTTTTGACACAGTAAAAG TAAGTTTCGTTAAGGTGTTAGTcaaatttttagctttttaatgACATTTG CACGTATTGCCCAGGCCCAAGAGAGAAACAGTCAGGGAATTGCACCTAAA TGCTCCCCTTCCCATAGGCACATGCtgattgggctgttccataaaatttc cgagccttttcaagtgaaaacaaatttcttggaaaagtgtagataccccc ctggaaaatggcaaaatttgcaaaagaacccttggaaaaaattcttttct tgtatctcaaagtgagggtggacgaattAAAATCAGTTgttcaccccctg gaaattcaagaataactttttaccccctagaaaaatgaaaaaagtgtgTA AGAGAACGGTTTTACAACATTTAAACATTACGGATGAGGAAAGAAAGATA CGATTATTTAATATTGACTTtctatattttgtttttcttcaggTTCGTTT ACAAGTACCTAAAGCTTCGTACCGTGgcgtgtttcattgtttcaccACCA TGGTCAAAGAAGAAAGCGTATGTCTCCTTACATCTTCATCATTCATAGAG ATCTTCATAGTTTTCTTTGCAATTCTGTCTATCATTAAGCAAGCTCGAAC ATTAATTTGCAGATGCTGGAACACAGGCCTACCATACTCAACCCTGTTAT TGACACTCTTCTGAGAAACTTTGTTTCATTTCCTTCACTCTAGTTTTCAG GCTTAATTACTCTCTTCTTATCGCACTTGAAAAATTCGGAAACACCAATT CTTTGACTGATTTGTTATATGTGTAATAAtaatttagtaattttttttct tttcttcacttttcagATATTCAGTTTATACAAGGGAATGACACCCCCAC TACTCGGAGTGGCTTTTCAAAATGCTATTTTATTTGGATTGCAAGGATAT TTCCGACGTTTCGTTGATGACAGTGTGTCCGGTGAAATGATCGCCGGAGC ACTAACGGGAGCGTCGCAAGCTATTGTTACAGCGCCTATCGAACATGCTA AAATTAAACTACAAATTCAAGGCACAGGATGTCCCACACAGAACACACGG AGATATAAAGGACCTATTCAAACGATTTTACAAATCAGACGTGAGAGTGG TACTAAAAGTTGTTTTCGTGGACTTCTTGGTGTTGTGTTGAGAGATATGC CAGGAACGGCTATTTACTTcggatctttttcttttttgaaccaatttttc atccccgAAGGTGGCGATATAAATTCTTTACGGCCCGCCACGTTACTTTT TACAGGAGGACTTGCAGGCATGCTTTCATGGGCGGCTTTTTATCCGATAG ATGTGATCAAAACACGTATACAAGCGGAAGGATTGCAACCGCACGGGCGG TATGCTTCATATACGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAGGGTA TACATGGATGACAAGAGGTTTTGGTGCAACCATGTTACGAGCTTTCCCTG TAAATGCGGCTATTTTCGCTACCGTAACTTTGATCTATCGATATATGAGA TCACAATCGAGTGATGAATATGATGATTGATTGgtgatttgtgttttttt ctatgttttttttttggctttcaatgtatcaaattattttgttatatttC TGGTTAGACTAAGGCTTAGTGCGATTGttggtattttttttacttttttt ttctctgataaaaacgaaatttATTACATACTTCATTACGGCATTTTTTG ATACCTTTTGTAACTTTTATACATTATCATTAATTTTATATccgatttat ttttttgcaatacAATGATACAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004264XLOC_004264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007542-exon-sc0000078-1491911889:31671..31700TCONS_00007542-exon-sc0000078-1491911889:31671..31700Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:31671..31700TCONS_00007542-exon-sc0000078-1510915933:31671..31700Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:31671..31700TCONS_00007542-exon-sc0000078-1575043694:31671..31700Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:32128..32209TCONS_00007542-exon-sc0000078-1491911889:32128..32209Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:32128..32209TCONS_00007542-exon-sc0000078-1510915933:32128..32209Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:32128..32209TCONS_00007542-exon-sc0000078-1575043694:32128..32209Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:32970..33057TCONS_00007542-exon-sc0000078-1491911889:32970..33057Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:32970..33057TCONS_00007542-exon-sc0000078-1510915933:32970..33057Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:32970..33057TCONS_00007542-exon-sc0000078-1575043694:32970..33057Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:37732..37798TCONS_00007542-exon-sc0000078-1491911889:37732..37798Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:37732..37798TCONS_00007542-exon-sc0000078-1510915933:37732..37798Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:37732..37798TCONS_00007542-exon-sc0000078-1575043694:37732..37798Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:38326..38369TCONS_00007542-exon-sc0000078-1491911889:38326..38369Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:38326..38369TCONS_00007542-exon-sc0000078-1510915933:38326..38369Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:38326..38369TCONS_00007542-exon-sc0000078-1575043694:38326..38369Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:38813..38887TCONS_00007542-exon-sc0000078-1491911889:38813..38887Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:38813..38887TCONS_00007542-exon-sc0000078-1510915933:38813..38887Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:38813..38887TCONS_00007542-exon-sc0000078-1575043694:38813..38887Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1491911889:39187..40149TCONS_00007542-exon-sc0000078-1491911889:39187..40149Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1510915933:39187..40149TCONS_00007542-exon-sc0000078-1510915933:39187..40149Clytia hemisphaericaexon
TCONS_00007542-exon-sc0000078-1575043694:39187..40149TCONS_00007542-exon-sc0000078-1575043694:39187..40149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:31671..40149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0844598 1.02186 1.21188e-07 7.71696 1.47415 2.0882 1.31969 2.99028e-05 3.43232e-07 0.0193487 0.137277 2.97779 3.70982 1.57347 0 5.75785 0 13.6845 5.82607 5.95938 7.69873 4.43781 2.41844 0.459381 4.25778 20.0463 15.5364 0.892465 0.911095
Blast
BLAST of TCONS_00007542 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.345e-69
Identity = 130/287 (45.30%), Postives = 179/287 (62.37%), Query Frame = 3
Query:  234 MALDFXXXXXXXXXXXXXXQPFDTVKVRLQV---PKASYRGVFHCFTTMVKEESIFSLYKGMTPPLLGVAFQNAILFGLQGY-FRRFVDDSVSGEMIAGALTGASQAIVTAPIEHAKIKLQIQGTGCPTQNTRRYKGPIQTILQIRRESGTKSCFRGLLGVVLRDMPGTAIYFGSFSFLNQFFIPEGGDINSLRPATLLFTGGLAGMLSWAAFYPIDVIKTRIQAEGLQPHGRYASYTDCAVVSFKEEGYTWMTRGFGATMLRAFPVNAAIFATVTLIYRYMRSQSS 1082
            MALDF AGC GG AGV+VG PFDTVKVRLQV    K  YRG  HCF +++K+ES+  LYKG+  PL+G+ F NA++FG+QG   R    DS   + +AGA  GA Q ++  P+E AK +LQ+Q  G      R YKG +  + QI    G +   RG++  +LR+ P   +YF ++  L +    E GD   L    LL  GG +G++SW + YP+DV+K+R+QA+GL+   RY    DC   S++ EG+   TRG  +T+LRAFPVNAA FATVT++  Y R + +
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAG----PARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGD--RLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTYARGEEA 281          
The following BLAST results are available for this feature:
BLAST of TCONS_00007542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL1.345e-6945.30Mitochondrial basic amino acids transporter OS=Hom... [more]
back to top