TCONS_00007541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007541
Unique NameTCONS_00007541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007541 ID=TCONS_00007541|Name=TCONS_00007541|organism=Clytia hemisphaerica|type=transcript|length=1403bp
AATTTTAAAGATGCCATAGAAGATGTCGAATGGGTAGAAATATATATTCC
TCAATGATGGTGGTGGTGGTTATCTCAAATCTAGCAACATCATCAAAAGT
GTATAATTCCAAATCGACCAAGCAAAGAACGCAGAAGTTCAGGATTTTTG
CAAAGATTCAGAAAAGcatGTGAGAGGTTCGACGAACGAAGGCAGATAAA
AGGTGTGCGAAGCTCTGGAATTTtacgcagaaaaaaaaaacagcatcGGG
AAAGAGATCGTATTGAGACGCGGAACGAAGACAGAAGATGGCTCTTGATT
TCGGCGCCGGTTGCCTAGGAGGGGCTGCCGGTGTGGTAGTAGGACAACCT
TTTGACACAGTAAAAgTTCGTTTACAAGTACCTAAAGCTTCGTACCGTGg
cgtgtttcattgtttcaccACCATGGTCAAAGAAGAAAGCATATTCAGTT
TATACAAGGGAATGACACCCCCACTACTCGGAGTGGCTTTTCAAAATGCT
ATTTTATTTGGATTGCAAGGATATTTCCGACGTTTCGTTGATGACAGTGT
GTCCGGTGAAATGATCGCCGGAGCACTAACGGGAGCGTCGCAAGCTATTG
TTACAGCGCCTATCGAACATGCTAAAATTAAACTACAAATTCAAGGCACA
GGATGTCCCACACAGAACACACGGAGATATAAAGGACCTATTCAAACGAT
TTTACAAATCAGACGTGAGAGTGGTACTAAAAGTTGTTTTCGTGGACTTC
TTGGTGTTGTGTTGAGAGATATGCCAGGAACGGCTATTTACTTcggatct
ttttcttttttgaaccaatttttcatccccgAAGGTGGCGATATAAATTC
TTTACGGCCCGCCACGTTACTTTTTACAGGAGGACTTGCAGGCATGCTTT
CATGGGCGGCTTTTTATCCGATAGATGTGATCAAAACACGTATACAAGCG
GAAGGATTGCAACCGCACGGGCGGTATGCTTCATATACGGACTGCGCTGT
TGTCAGTTTTAAAGAGGAAGGGTATACATGGATGACAAGAGGTTTTGGTG
CAACCATGTTACGAGCTTTCCCTGTAAATGCGGCTATTTTCGCTACCGTA
ACTTTGATCTATCGATATATGAGATCACAATCGAGTGATGAATATGATGA
TTGATTGgtgatttgtgtttttttctatgttttttttttggctttcaatg
tatcaaattattttgttatatttCTGGTTAGACTAAGGCTTAGTGCGATT
GttggtattttttttactttttttttctctgataaaaacgaaatttATTA
CATACTTCATTACGGCATTTTTTGATACCTTTTGTAACTTTTATACATTA
TCATTAATTTTATATccgatttatttttttgcaatacAATGATACAATTT
TCC
Run BLAST on NCBI

protein sequence of TCONS_00007541-protein

>TCONS_00007541-protein ID=TCONS_00007541-protein|Name=TCONS_00007541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MALDFGAGCLGGAAGVVVGQPFDTVKVRLQVPKASYRGVFHCFTTMVKEE
SIFSLYKGMTPPLLGVAFQNAILFGLQGYFRRFVDDSVSGEMIAGALTGA
SQAIVTAPIEHAKIKLQIQGTGCPTQNTRRYKGPIQTILQIRRESGTKSC
FRGLLGVVLRDMPGTAIYFGSFSFLNQFFIPEGGDINSLRPATLLFTGGL
AGMLSWAAFYPIDVIKTRIQAEGLQPHGRYASYTDCAVVSFKEEGYTWMT
RGFGATMLRAFPVNAAIFATVTLIYRYMRSQSSDEYDD
Run BLAST on NCBI

transcript from alignment at sc0000078:30176..40149+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007541 ID=TCONS_00007541|Name=TCONS_00007541|organism=Clytia hemisphaerica|type=transcript|length=9974bp|location=Sequence derived from alignment at sc0000078:30176..40149+ (Clytia hemisphaerica)
AATTTTAAAGGTTGGGCATTGAATCTCTAGTCGTTTTTGTAAATAAttaa
tttattatatttttttataataatttaaTTGACCCATAAGCATAAACAAG
GACGTTCAAGCctttaaaatgttgatatttaaCATACCCAAACCTATTTC
AACCCTCCTAAATTCAATATACAGAGAGTCTTTATCTATGAGTTGCTACA
GTAGACGCTTTTTGAAATGGATTTGTAGGCTTTTGGTCTTGTTTGACTTT
TATTGGGCTCtaccagaaaatgtccgtacatggggggtggaggatatatt
gtcgggggggggggggggggatcatcaaaatttgccttgcccggggggta
aatttgctctgtccgggggtaatttgggttgtcccgggggtcaactgatg
cttgtcgggggggggggggggggatcatcaaaatttgccttgcccggggg
gtaaatttgctctgtccgggggtaatttgggttgtcccgggggtcaactg
atgcttgtcgggggggggggggggggatcatcaaaatttgccttgcccgg
ggggtaaatttgctctgtccgggggtaatttgggttgtcccgggggtcaa
ctgatgcttgtcgggggggggggggggggatcatcaaaatttgccttgcc
cggggggtaaatttgctctgtccgggggtaatttgggttgtcccgggggt
caactgatgcttgtcggggggggggggggaaaaaactttttttccggggg
ggccaaaagtcactttgtccggggggtaaatcactgaaaattgttatatc
ttccaccccccatattcaatttttttctggaaaagcccattatgaCTTTG
ATCTTTTGACCCTAAATTCGTACAATTTCAGTGAAttatatcttgaaaat
ataatCTTTAACTTCAATTTCAGATGCCATAGAAGATGTCGAATGGGTAG
AAATATATATTCCTCAATGATGGTGGTGGTGGTTATCTCAAATCTAGGTA
TTAAATTTATCTTATTTCTAAAGGTTTCTATTGTCCATCTTTGTCTTGGT
TGTCAGGAATCTCAAGAGTTCACGTAGTCCACCCGCTGTCCACCTTTTAG
TGAACGTCGTCTGTCATCCTACGTTTTAGATGGACCACTTTCCTTTATAT
CTaagatatctttttatattttacttGGCTCTGGTTTCATTGAGCACTCT
GCAAGATCAATCACAAACAATACTTTATCTAAGATATAATAGAGATCATT
CGCACAACAAAAAAACTAGGGGATGAAATATCTTACTGTTATTAGAATTC
CAAAGTTTGCTATCATTATGATTGGCAAAGAATGAGTTAGTAAGAGGTTT
GTCTTGAAATGTTTTCCTTTGATAATGCTAGTTGTAATTACTTTAAGACT
CCATTTATTATCTTTGTATGGGGTAAAATATTGCAATCAGCTTGAAAGat
taatatttactatttttaaaatcatcatTAGTCATTTAGTTTTCTAAAGC
AGGTTggtcaaaaaaattgtcaaaggTAATGTCTGTTAAAAAGATACTTG
CTTGGGTTTATGCATTATGGTGCAAAAGATTGACTTAGTGCGCTTGTTAG
GGTTTTTGGAAGTCTCGTAATTAGTTGATTATTGTGCATTTTCTTTCTCA
TAGTGTATATATGCTGTAGAAATGAAATCATATGATTGATTAGTACTAAG
TTGAACACTTATTAGTTCTCAGGATATTAAAATTCCATTTAAGAGTATAG
CGCTGTTAATACGCTGAACTATATTTGTCATATTTCACATTCATAACTAC
TTCTTATTTTTAGTACTAAGAAGATTATCATAAGTTTTTCGTCATTGTTA
AACTTGTACTTAAGTTGTAGATTTCTCGTTCAAAGTTATTTATATTAGGT
TGACGTACTTTCTGTCCCCTGTACAATTTCGATCTCCTTTACCTTATTTT
AGCAACATCATCAAAAGTGTATAATTCCAAATCGACCAAGCAAAGAACGC
AGAAGTTCAGGATTTTTGCAAAGATTCAGAAAAGGTAATTCCATAAATTT
CTACTTTCTCTTTGAAAATTGTGCAGTTGGATTTATATTAATGGGTCAAT
GTCCTTTCATACATTATGTTTTTGCGTTGAAAGCTCAATGAAtatttgac
attattttttttagcttagGGCCTGGGTCATCAAGGGATAGAATATGCTT
TAAAAGGTGAAACTCATAAGACGAGATTTCGTCTCCAGGTTCCTTCTAAT
CTtgtaacagatcatccattctgcgcatacCACGCTCTTCTCTAATGGGA
TGTGACGAATATGAAGATCTGCATTCAAAACTGCGTTGTCTTTtacttga
aattgaaagtgaaagcGATTTGTTTCTGACTTATATGTTTATGAATGACG
TTTGTTTTGGTGTGATTGTATTACTTTAGCAAGACCACGCTTAAAaggct
catttaatattcatcccaaatctggacgaaaaagatcaaagcggtGTGCC
AACCTGGGTAGATTTACTTATGGCCCATGAGCCAtggcctttagagtgaa
tacgtgTTAGCGCGGAGTTATCAGAATCTGCTCGTAGATTCGATACCTTC
TGTCAAACTTTATCGGCCATTTCACTCTATCTTTCTTATGCCTTGAGATG
GATTCTCAAAACCGCGTTGAGGTAGCTATTTAATATTTAGCATAAATTGT
ACATCCTCTAACATTTTATCTTGAGATCTAGAAACTCTTAATTGTGGAAT
CATATTAACCCTTCTATCTTctctacatttttttttaaataaagcatGTG
AGAGGTTCGACGAACGAAGGCAGATAAAAGGTGTGCGAAGCTCTGGAATT
TtacgcagaaaaaaaaaacagcatcGGGAAAGGTATTTAATTGTTGCTTT
ACTTCTTTTGattcttttgaaattatattacgTATATGGCATACTAATTA
TCGATTTATAGCCTTCGAGAACTCCATTACTTTGTCTCTTCTAgtgattt
atttttcataagaaactGTAATAATCCTCAGTGATTTTTTACTGTAAGAT
TTTACCAGGAATATTATTGTTGAAAGAATCGTTTGTTTTGGAGACCTAGc
cagtttcaaaaataaatatttgtaACCTTCTCTCAACTTGGTTAAGCGTG
TGATTTAGATTTTCTTacaacaaaaaatgttcttGTGAAAAGCGTTGTGA
ATTAGCGAACCTTCACTCCATTGTCAGTTGTCACTCAAAAGAAAACCTAT
TAAATGTCGTGGTCAGATTTACTAAGAAATTTCTTTACGAATGAATAAAT
GGCTTAGCCTTGTGAGTGAAGCCGTCTATTGGTTCTGATAATTAATTTCT
CTTGATTTGAAATGCAGTTATTAAAAATGTGCAaaggaaagaaatatttt
tttgtccaCGAGAAATTTGGTTATAGAGCACAGGTTGTGGTTTTTCGTTG
TCACACGCGTCTTGAGCTTTCAGTTGATTTTGTTCTTTTTGCCTCCTTGT
CGCTTTTTGATTGGTAGTTCTGAAgggaaaatgaagattgaagaTTTATG
TGTCAATGATTATCTTTACCTCGATGTCAGATGAAAACTGGTAAGGTTTC
TTTGTTGTTAGGTCGCGGCCCCTAACAAAAACGTTGGTTTTCAAAAAGTT
GGTCACgtacattttgaatttttttactttatttttgaaactttagcaaT
CCGCTGGCCATGGTCTATATTGACTGCTGATCTCTCTTTGTGTTCGAAAC
GCCCCTGTCTCGCATTCACGTTAAATACCTATTTACTTAACCAATGGGGA
AGTAGTCGCCTCTGTATACATTTTATTTTCCCTCCGGTCGCTACCCAACC
GGAGCTATTCTACTGTTTTGGAGTTTGAATTATAGGCCTGTGCAAAAACT
ATGCAGCATTTCTCAATAAAGATAAATGTATTGGTTAGAGAATACCCACT
GCTCAGGCACTTCGTTCTTTTTTCGATTGTAGCAAGCCTTTTTCACCAAG
AAACGAAGGAATTTTATTTGACCCATTGGATgcagtttttctttctttct
cactttGTCAATCCGTTACACTTGTTAAGAATGTGATAGAGATCTGTAGG
GTCATTCAAAAATTACATAATTCTGCCTATCTTATCTCAAGCTTGTTCCT
CCTTTTTCTACTTTCTGATAAAATCTTTGTCTGATGTTTAACCCGATATC
ATTGAAAAGTTTTTCCGGGTTTTAGAATGAGATTTCCGGTGCAATTAGAC
AGTAGTTCGGGACGTTCGATAACGGGTCGACAACTCACTCAATTAGAGTC
CTATGAAAGGCTAATAGCATCTAAATGCTTTGAAATCAAGTTAATGAAAA
TACCTCATGCTATCCATTATTTTTGTTAAACATTGAATTGATATCTATTC
AAACTGACTAGAATTTTGATCCTTAATTGCATCGCGTGAAACTGTTTTAT
GACACCCTACTTACTATACAGTAAGTTAATCTTGGCAACTCCTCTTAATG
GAGCTGTTACCCTTAGTAACATATTATACCTATTAGAAAtagcttttttg
agattttgcaaCCTGTTTGTTGTCGTTACCAATCCAATACCTTGAACAGG
TTGTTTTAATCcctaatctttgtgtaaacgaGTCCTCAAAATCGTTTTCG
AAATCTTTGCTTCTCCCATCATAAAGAATTTAATTAGTCTGGATTTTGGT
GTTGACaacctttttaaaattgtttatcaTTTGATGTCGATACATTTACT
AGCTACACTCGCCTCTTACACACCTTTTTCATTAAGAGTTGGAGAAGCTT
TTGTAAGTTCGTTGCTAAttggtttattttgctttggtGTAACTGAAACA
GGCCGTTTAACATGATCATTTAGTAGTTTATTTTGGATAATTGATGCATT
TATAACTGAATGCGGATGTTCCAAAAATGTTATTGCTGGCTTTTGATTGA
TATTGGAAATCTTTGTTGCTGGGCGTGTCACTTTCATTTTGTTCGGTTGT
TTTCTGTTTTAGAGGGTAGAGAAGTGTCATATTTGCGCAAGAAATCAGAG
AGAGATTTTCAAAGGGTTTTCAAAGATCTTTCAGAGATACCACGTGGAGT
AGCCCTGTCTACTGTGGACCCTCGTATATAAAAGACAGATCTTCAACCAA
AAAGGCTTAATCTTAGAAGATCGGAATGCAAGACTGCTCTGCTCTCGCTC
TCCTTCAACTAAATTGAAATCATTTTGTACTTAGTATACTATTTCTAAAC
TTGTTCGTTGAAAAAAGCATAAGAATTTCAGTGATGGGTCTGTGAAAGTA
TACAATCAACTCTACGTATGTAACAACAGTAAAAGTCACGTTTTAGACTT
CAACTGAATGTGGCGTTAAAAAATCAATGTGGAGCATGAAAGCGAGGTTT
TCGGAAAAAGATAATAAAGAAATAAATTATTTACAGCTCCTTCTCATGCC
AATAGAATCATCcgaaaaatatttcgttgaGGGGGAACCTAGTTTTACTA
GTGAAAATTCAAAAGGCTTTTAATTGATTTTCCATCAGTTTCTTTTTTAT
GACGAACGCATACATACCGCAGTCTTATTctgttttttatcaatattccA
AGATTTTACTGTCGATTTACATAACAGAGTATTGAACTTTATATCTACtc
atgaaaaataatatttcgGGTAAAGATTCATCTTAAATCTGATTAAAATG
GTAAACTCTAAGAATTAAAAACCTTCTTAAAGAAAAGAATGGTATTTTTC
TATATCTTTGTATGTTACGTAACAGGACCTCTGTATGGTCAGCATAGTCA
TTTGTTAAAACAAGGGGCAGCGGAACAATActagggacaagctggagttt
ttacaagctcttatttgatttagttggtcgttaaccagtaataaaacaat
tttgttactttttctaaagaacgcgtcatctctatcacttcaaatgaaca
attagtgaagtatcttgtaaaaactccagctcatccccaaTACTAGAGGA
ACCAACTTCGCCAAGGGAAATTTGTCATTCATTTTGTTTAAAAGTAGGGT
GACAATCACTAGCTAAAGCATTGTGTGGTAGCTTTTTAGAAGTTTTTTGA
AACACTCCTCTAAGGGAATAGTTTTATTCTCGAACGGAAGCAAGGGCAAC
TTAACATCAAACGATCATCTTATCGTCAGTCTTAGTGAAAAATCATAGGC
CATTTAGCAGTTGCAAAGCGTAacgggtaatcaggaccactgcgcgctaa
tgacaACTTACTATTAGTccgaaattttgaagatttttgagcaaccggtc
ctgattacccatgattcatttcgactgtgaaatggcctttTTGAAATCGT
ACAGGTaaaccattttgaattttacttAAAGACAGTATTTCGCATGTTGT
TCAGGCATTACTTATTGCCGAAACTTTTCCTATAGAAACTGTCAAGCTAg
agagcttttttgaaggggtgTGAATGGGGTGCGACGTCACGTGAcgttga
tgaattttttttggaagttTGACGCTGTAAACAATTAGACTTTGTTGAAG
ATTCTGTAAGAATATCGTCCTTCAATGCATGAGGAATCAAGGTTCAGTCA
ATGTCAAAGGAGAAGATAAATGTTTTCTGAAAGAAAGATTTGTtgaattc
ttaatttttaaCAATGAAGTGAAAGATTTTCATGTTATCGGTATGAATGA
ATATTTGACTGGAACATTTCTCAACAAATAAGTTGAATGTCATAACGTTT
ACCATGTGACTAACCATTGTTGGCGACAAGAAAATACTCATTCAATCTTT
CATCAATACTGATTGAGGAGGCACCATAGTGAAGGATCTTCACCTCATCA
ATAATTGAAGAAAACTTTCTAATTTTACCTTCCAATTCTCAACTACCCTT
TCAcccttttcatgaaaatttaatgaagaaatactttcatcctttctttg
tgtgtttggaatatattcatttatttttgaatttttcatactTTTCCTTT
CTCTCAAATTTGGACAACTTCAGGATTACTTTACATCGCGATGAGGAGAG
ACAGATACGCCTTGCTGATATACTTTCATTCTTTTGTGATAGACCAGTTG
AGGCTTGAAGTTTTCGAACAAatcatcttctttttgactacAGTATAAGC
CTTTTTGGGATCAAAAACACACATTTTTCCGTGAGGCTTCCAGAGCCCTA
TTTAGTACGCTGAGCGTGACACAAATCATAAAGAGtgtgcttttttgaaa
atctttgttttttcagcGTGACGAGATGAATTGCATGATGGGAGGGGTTC
TCCCCTTGTTCTATCCATCTTTAATTGGTTATAATTGATTTTAATCGACC
AATTCGACGCCAAGTTGAATCCCTAATTGGATTGCTTcttttttccttga
aaacagCTTGTTTACATCGTTGCACTACCGGGAGTAAACTTGATTATAAA
TCATTAAATATCAGAAATCCTCAGCAAATCCTACGACAGTATCAATTATC
TCAGGACATTTTTtacttaaattttcattttttctttttatgttgATAAA
ATCTAGAGATCGTATTGAGACGCGGAACGAAGACAGAAGATGGCTCTTGA
TTTCGGCGCCGGTTGCCTAGGAGGTaagtcttttttcaaatttcttttat
ctAAGGGCATTTTGCCAATACCAATACTAAGAATCTCTTAATATCAAGGT
GAAACGATAAACGATGACGGCGATAAACGTTGCCCTCACAAGCATATCTG
CCCTCACAAGCATATCTGGGCCCAGATATTGCAAAGGTTTATGCTAAGCA
TTACCTTGAGCCTACTTTTTCCGTTTTTTGATGGAATTTTACTGATTTTA
AGAATTTCCCAGAACTTTGGCTTATGATATAAGCATTTTCAGCCTTGTCA
ATCTCTCGATCTAAGCATCTCCgagaaagttttttaaaatgtaCCTTAAT
TTAATCTAATTTAAATTAACCTATTAATAGGTAAGCCTGAAAAATTTCGC
TCGAGCCCTGATGATATTCCAGCAACTGTTGAGTAAAATTTATATTGCCA
AAAAATAGTCGATATTGAGAGAAAGATCGTAAAACCAATGGCTAACGAGA
AAGCGCGACAAAGGAACTTTAAACTGAatattttcgttttttcttTACAG
GGGCTGCCGGTGTGGTAGTAGGACAACCTTTTGACACAGTAAAAGTAAGT
TTCGTTAAGGTGTTAGTcaaatttttagctttttaatgACATTTGCACGT
ATTGCCCAGGCCCAAGAGAGAAACAGTCAGGGAATTGCACCTAAATGCTC
CCCTTCCCATAGGCACATGCtgattgggctgttccataaaatttccgagc
cttttcaagtgaaaacaaatttcttggaaaagtgtagatacccccctgga
aaatggcaaaatttgcaaaagaacccttggaaaaaattcttttcttgtat
ctcaaagtgagggtggacgaattAAAATCAGTTgttcaccccctggaaat
tcaagaataactttttaccccctagaaaaatgaaaaaagtgtgTAAGAGA
ACGGTTTTACAACATTTAAACATTACGGATGAGGAAAGAAAGATACGATT
ATTTAATATTGACTTtctatattttgtttttcttcaggTTCGTTTACAAG
TACCTAAAGCTTCGTACCGTGgcgtgtttcattgtttcaccACCATGGTC
AAAGAAGAAAGCGTATGTCTCCTTACATCTTCATCATTCATAGAGATCTT
CATAGTTTTCTTTGCAATTCTGTCTATCATTAAGCAAGCTCGAACATTAA
TTTGCAGATGCTGGAACACAGGCCTACCATACTCAACCCTGTTATTGACA
CTCTTCTGAGAAACTTTGTTTCATTTCCTTCACTCTAGTTTTCAGGCTTA
ATTACTCTCTTCTTATCGCACTTGAAAAATTCGGAAACACCAATTCTTTG
ACTGATTTGTTATATGTGTAATAAtaatttagtaattttttttcttttct
tcacttttcagATATTCAGTTTATACAAGGGAATGACACCCCCACTACTC
GGAGTGGCTTTTCAAAATGCTATTTTATTTGGATTGCAAGGATATTTCCG
ACGTTTCGTTGATGACAGTGTGTCCGGTGAAATGATCGCCGGAGCACTAA
CGGGAGCGTCGCAAGCTATTGTTACAGCGCCTATCGAACATGCTAAAATT
AAACTACAAATTCAAGGCACAGGATGTCCCACACAGAACACACGGAGATA
TAAAGGACCTATTCAAACGATTTTACAAATCAGACGTGAGAGTGGTACTA
AAAGTTGTTTTCGTGGACTTCTTGGTGTTGTGTTGAGAGATATGCCAGGA
ACGGCTATTTACTTcggatctttttcttttttgaaccaatttttcatccc
cgAAGGTGGCGATATAAATTCTTTACGGCCCGCCACGTTACTTTTTACAG
GAGGACTTGCAGGCATGCTTTCATGGGCGGCTTTTTATCCGATAGATGTG
ATCAAAACACGTATACAAGCGGAAGGATTGCAACCGCACGGGCGGTATGC
TTCATATACGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAGGGTATACAT
GGATGACAAGAGGTTTTGGTGCAACCATGTTACGAGCTTTCCCTGTAAAT
GCGGCTATTTTCGCTACCGTAACTTTGATCTATCGATATATGAGATCACA
ATCGAGTGATGAATATGATGATTGATTGgtgatttgtgtttttttctatg
ttttttttttggctttcaatgtatcaaattattttgttatatttCTGGTT
AGACTAAGGCTTAGTGCGATTGttggtattttttttactttttttttctc
tgataaaaacgaaatttATTACATACTTCATTACGGCATTTTTTGATACC
TTTTGTAACTTTTATACATTATCATTAATTTTATATccgatttatttttt
tgcaatacAATGATACAATTTTCC

Coding sequence (CDS) from alignment at sc0000078:30176..40149+

>TCONS_00007541 ID=TCONS_00007541|Name=TCONS_00007541|organism=Clytia hemisphaerica|type=CDS|length=3468bp|location=Sequence derived from alignment at sc0000078:30176..40149+ (Clytia hemisphaerica)
ATGGCTCTTGATTTCGGCGCCGGTTGCCTAGGAGGGGCTGCCGGTGTGGT
AGTAGGACAACCTTTTGACACAGTAAAAgTTCGTTTACAAGTACCTAAAG
CTTCGTACCGTGgcgtgtttcattgtttcaccACCATGGTCAAAGAAGAA
AGCATATTCAGTTTATACAAGGGAATGACACCCCCACTACTCGGAGTGGC
TTTTCAAAATGCTATTTTATTTGGATTGCAAGGATATTTCCGACGTTTCG
TTGATGACAGTGTGTCCGGTGAAATGATCGCCGGAGCACTAACGGGAGCG
TCGCAAGCTATTGTTACAGCGCCTATCGAACATGCTAAAATTAAACTACA
AATTCAAGGCACAGGATGTCCCACACAGAACACACGGAGATATAAAGGAC
CTATTCAAACGATTTTACAAATCAGACGTGAGAGTGGTACTAAAAGTTGT
TTTCGTGGACTTCTTGGTGTTGTGTTGAGAGATATGCCAGGAACGGCTAT
TTACTTcggatctttttcttttttgaaccaatttttcatccccgAAGGTG
GCGATATAAATTCTTTACGGCCCGCCACGTTACTTTTTACAGGAGGACTT
GCAGGCATGCTTTCATGGGCGGCTTTTTATCCGATAGATGTGATCAAAAC
ACGTATACAAGCGGAAGGATTGCAACCGCACGGGCGGTATGCTTCATATA
CGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAGGGTATACATGGATGACA
AGAGGTTTTGGTGCAACCATGTTACGAGCTTTCCCTGTAAATGCGGCTAT
TTTCGCTACCGTAACTTTGATCTATCGATATATGAGATCACAATCGAGTG
ATGAATATGATGATTGAATGGCTCTTGATTTCGGCGCCGGTTGCCTAGGA
GGGGCTGCCGGTGTGGTAGTAGGACAACCTTTTGACACAGTAAAAgTTCG
TTTACAAGTACCTAAAGCTTCGTACCGTGgcgtgtttcattgtttcaccA
CCATGGTCAAAGAAGAAAGCATATTCAGTTTATACAAGGGAATGACACCC
CCACTACTCGGAGTGGCTTTTCAAAATGCTATTTTATTTGGATTGCAAGG
ATATTTCCGACGTTTCGTTGATGACAGTGTGTCCGGTGAAATGATCGCCG
GAGCACTAACGGGAGCGTCGCAAGCTATTGTTACAGCGCCTATCGAACAT
GCTAAAATTAAACTACAAATTCAAGGCACAGGATGTCCCACACAGAACAC
ACGGAGATATAAAGGACCTATTCAAACGATTTTACAAATCAGACGTGAGA
GTGGTACTAAAAGTTGTTTTCGTGGACTTCTTGGTGTTGTGTTGAGAGAT
ATGCCAGGAACGGCTATTTACTTcggatctttttcttttttgaaccaatt
tttcatccccgAAGGTGGCGATATAAATTCTTTACGGCCCGCCACGTTAC
TTTTTACAGGAGGACTTGCAGGCATGCTTTCATGGGCGGCTTTTTATCCG
ATAGATGTGATCAAAACACGTATACAAGCGGAAGGATTGCAACCGCACGG
GCGGTATGCTTCATATACGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAG
GGTATACATGGATGACAAGAGGTTTTGGTGCAACCATGTTACGAGCTTTC
CCTGTAAATGCGGCTATTTTCGCTACCGTAACTTTGATCTATCGATATAT
GAGATCACAATCGAGTGATGAATATGATGATTGAATGGCTCTTGATTTCG
GCGCCGGTTGCCTAGGAGGGGCTGCCGGTGTGGTAGTAGGACAACCTTTT
GACACAGTAAAAgTTCGTTTACAAGTACCTAAAGCTTCGTACCGTGgcgt
gtttcattgtttcaccACCATGGTCAAAGAAGAAAGCATATTCAGTTTAT
ACAAGGGAATGACACCCCCACTACTCGGAGTGGCTTTTCAAAATGCTATT
TTATTTGGATTGCAAGGATATTTCCGACGTTTCGTTGATGACAGTGTGTC
CGGTGAAATGATCGCCGGAGCACTAACGGGAGCGTCGCAAGCTATTGTTA
CAGCGCCTATCGAACATGCTAAAATTAAACTACAAATTCAAGGCACAGGA
TGTCCCACACAGAACACACGGAGATATAAAGGACCTATTCAAACGATTTT
ACAAATCAGACGTGAGAGTGGTACTAAAAGTTGTTTTCGTGGACTTCTTG
GTGTTGTGTTGAGAGATATGCCAGGAACGGCTATTTACTTcggatctttt
tcttttttgaaccaatttttcatccccgAAGGTGGCGATATAAATTCTTT
ACGGCCCGCCACGTTACTTTTTACAGGAGGACTTGCAGGCATGCTTTCAT
GGGCGGCTTTTTATCCGATAGATGTGATCAAAACACGTATACAAGCGGAA
GGATTGCAACCGCACGGGCGGTATGCTTCATATACGGACTGCGCTGTTGT
CAGTTTTAAAGAGGAAGGGTATACATGGATGACAAGAGGTTTTGGTGCAA
CCATGTTACGAGCTTTCCCTGTAAATGCGGCTATTTTCGCTACCGTAACT
TTGATCTATCGATATATGAGATCACAATCGAGTGATGAATATGATGATTG
AATGGCTCTTGATTTCGGCGCCGGTTGCCTAGGAGGGGCTGCCGGTGTGG
TAGTAGGACAACCTTTTGACACAGTAAAAgTTCGTTTACAAGTACCTAAA
GCTTCGTACCGTGgcgtgtttcattgtttcaccACCATGGTCAAAGAAGA
AAGCATATTCAGTTTATACAAGGGAATGACACCCCCACTACTCGGAGTGG
CTTTTCAAAATGCTATTTTATTTGGATTGCAAGGATATTTCCGACGTTTC
GTTGATGACAGTGTGTCCGGTGAAATGATCGCCGGAGCACTAACGGGAGC
GTCGCAAGCTATTGTTACAGCGCCTATCGAACATGCTAAAATTAAACTAC
AAATTCAAGGCACAGGATGTCCCACACAGAACACACGGAGATATAAAGGA
CCTATTCAAACGATTTTACAAATCAGACGTGAGAGTGGTACTAAAAGTTG
TTTTCGTGGACTTCTTGGTGTTGTGTTGAGAGATATGCCAGGAACGGCTA
TTTACTTcggatctttttcttttttgaaccaatttttcatccccgAAGGT
GGCGATATAAATTCTTTACGGCCCGCCACGTTACTTTTTACAGGAGGACT
TGCAGGCATGCTTTCATGGGCGGCTTTTTATCCGATAGATGTGATCAAAA
CACGTATACAAGCGGAAGGATTGCAACCGCACGGGCGGTATGCTTCATAT
ACGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAGGGTATACATGGATGAC
AAGAGGTTTTGGTGCAACCATGTTACGAGCTTTCCCTGTAAATGCGGCTA
TTTTCGCTACCGTAACTTTGATCTATCGATATATGAGATCACAATCGAGT
GATGAATATGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004264XLOC_004264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007541-exon-sc0000078-1491911889:30176..30185TCONS_00007541-exon-sc0000078-1491911889:30176..30185Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:30176..30185TCONS_00007541-exon-sc0000078-1510915933:30176..30185Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:30176..30185TCONS_00007541-exon-sc0000078-1575043694:30176..30185Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:31099..31172TCONS_00007541-exon-sc0000078-1491911889:31099..31172Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:31099..31172TCONS_00007541-exon-sc0000078-1510915933:31099..31172Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:31099..31172TCONS_00007541-exon-sc0000078-1575043694:31099..31172Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:32128..32209TCONS_00007541-exon-sc0000078-1491911889:32128..32209Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:32128..32209TCONS_00007541-exon-sc0000078-1510915933:32128..32209Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:32128..32209TCONS_00007541-exon-sc0000078-1575043694:32128..32209Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:32970..33057TCONS_00007541-exon-sc0000078-1491911889:32970..33057Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:32970..33057TCONS_00007541-exon-sc0000078-1510915933:32970..33057Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:32970..33057TCONS_00007541-exon-sc0000078-1575043694:32970..33057Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:37732..37798TCONS_00007541-exon-sc0000078-1491911889:37732..37798Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:37732..37798TCONS_00007541-exon-sc0000078-1510915933:37732..37798Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:37732..37798TCONS_00007541-exon-sc0000078-1575043694:37732..37798Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:38326..38369TCONS_00007541-exon-sc0000078-1491911889:38326..38369Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:38326..38369TCONS_00007541-exon-sc0000078-1510915933:38326..38369Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:38326..38369TCONS_00007541-exon-sc0000078-1575043694:38326..38369Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:38813..38887TCONS_00007541-exon-sc0000078-1491911889:38813..38887Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:38813..38887TCONS_00007541-exon-sc0000078-1510915933:38813..38887Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:38813..38887TCONS_00007541-exon-sc0000078-1575043694:38813..38887Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1491911889:39187..40149TCONS_00007541-exon-sc0000078-1491911889:39187..40149Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1510915933:39187..40149TCONS_00007541-exon-sc0000078-1510915933:39187..40149Clytia hemisphaericaexon
TCONS_00007541-exon-sc0000078-1575043694:39187..40149TCONS_00007541-exon-sc0000078-1575043694:39187..40149Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007541-proteinTCONS_00007541-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:30176..40149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16907	1.91354	0	0.592459	0	0.700125	1.68934	0.790771	1.48119	1.65404	1.29413	0.437528	1.21357	0.808637	1.49225	1.85265	0.493204	1.85762	1.54371	1.46165	2.29613	3.31751	2.25989	2.13487	2.82109	0	3.60348	4.80717	0.729213	0.742953
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
Blast
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BLAST of TCONS_00007541 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.140e-69
Identity = 130/287 (45.30%), Postives = 179/287 (62.37%), Query Frame = 3 
Query:  288 MALDFXXXXXXXXXXXXXXQPFDTVKVRLQV---PKASYRGVFHCFTTMVKEESIFSLYKGMTPPLLGVAFQNAILFGLQGY-FRRFVDDSVSGEMIAGALTGASQAIVTAPIEHAKIKLQIQGTGCPTQNTRRYKGPIQTILQIRRESGTKSCFRGLLGVVLRDMPGTAIYFGSFSFLNQFFIPEGGDINSLRPATLLFTGGLAGMLSWAAFYPIDVIKTRIQAEGLQPHGRYASYTDCAVVSFKEEGYTWMTRGFGATMLRAFPVNAAIFATVTLIYRYMRSQSS 1136
            MALDF AGC GG AGV+VG PFDTVKVRLQV    K  YRG  HCF +++K+ES+  LYKG+  PL+G+ F NA++FG+QG   R    DS   + +AGA  GA Q ++  P+E AK +LQ+Q  G      R YKG +  + QI    G +   RG++  +LR+ P   +YF ++  L +    E GD   L    LL  GG +G++SW + YP+DV+K+R+QA+GL+   RY    DC   S++ EG+   TRG  +T+LRAFPVNAA FATVT++  Y R + +
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAG----PARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGD--RLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTYARGEEA 281
The following BLAST results are available for this feature:
BLAST of TCONS_00007541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL2.140e-6945.30Mitochondrial basic amino acids transporter OS=Hom... [more]
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