TCONS_00007524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007524
Unique NameTCONS_00007524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007524 ID=TCONS_00007524|Name=TCONS_00007524|organism=Clytia hemisphaerica|type=transcript|length=721bp
GAGCGAGTCGTCAATGATATTAACTATTAGCTGACATTTGTCAGCATTAC
CAACCATTTGATTAATCGAAAGCCATGTGAAGATTTTTTCTGCTACAGAG
CTTAGTTTACCACTTACTNtaatcaatatcaactattaATTACAAATCTA
TCTAGAGGTTGATACTCAAGATCAActattatttacaaattaatttaaat
tcaatcaatGAAACCAACGCCATGGATAAAAGTGCAACAGTTTCGGCAAG
GACAAGTAGTGGGCCTCCAttgcttgatttcttttttaaattcatctagg
tttttaagttttttaaagtcatCGGGAANTGTCCGCATAATTCGCAACCT
TAGTATcctcaatgatgaaaaagaggtcacagatataaatattgaaaagC
AGAGGGCCAAGGATTGATCCCTGGGGAACACCATCCTTGATCTTGATCCA
GTTACTCAGTTCGTTGCCTACTTTTGTCCTTTGTTGCCTATTTTCTAGAT
AACTCTTGACTAACCCAGTGGAAAGGTCATCAAACCCGTATGCACTGATC
TTTACTACAAGTAATTTGTGGCACATGCAGTCAAAGGCCTTAGAAAGGTT
GATGAGCAGTGCcccaaaaacatcttttttgtcATTGGCTAGCTTCCAGA
GCTCTTCCATTGGGAGAAGGGAGGTTTGAGTGGAATATCCTTTCCTGAAA
CCACATTGTTGTTCATCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00007524-protein

>TCONS_00007524-protein ID=TCONS_00007524-protein|Name=TCONS_00007524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
FDEQQCGFRKGYSTQTSLLPMEELWKLANDKKDVFGALLINLSKAFDCMC
HKLLVVKISAYGFDDLSTGLVKSYLENRQQRTKVGNELSNWIKIKDGVPQ
GSILGPLLFNIYICDLFFIIEDTKVANYADXSR
Run BLAST on NCBI

transcript from alignment at sc0000077:616061..616781

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007524 ID=TCONS_00007524|Name=TCONS_00007524|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0000077:616061..616781 (Clytia hemisphaerica)
CTTTGATGAACAACAATGTGGTTTCAGGAAAGGATATTCCACTCAAACCT
CCCTTCTCCCAATGGAAGAGCTCTGGAAGCTAGCCAATgacaaaaaagat
gtttttgggGCACTGCTCATCAACCTTTCTAAGGCCTTTGACTGCATGTG
CCACAAATTACTTGTAGTAAAGATCAGTGCATACGGGTTTGATGACCTTT
CCACTGGGTTAGTCAAGAGTTATCTAGAAAATAGGCAACAAAGGACAAAA
GTAGGCAACGAACTGAGTAACTGGATCAAGATCAAGGATGGTGTTCCCCA
GGGATCAATCCTTGGCCCTCTGcttttcaatatttatatctgtgacctct
ttttcatcattgaggATACTAAGGTTGCGAATTATGCGGACANTTCCCGa
tgactttaaaaaacttaaaaacctagatgaatttaaaaaagaaatcaagc
aaTGGAGGCCCACTACTTGTCCTTGCCGAAACTGTTGCACTTTTATCCAT
GGCGTTGGTTTCattgattgaatttaaattaatttgtaaataatagTTGA
TCTTGAGTATCAACCTCTAGATAGATTTGTAATtaatagttgatattgat
taNAGTAAGTGGTAAACTAAGCTCTGTAGCAGAAAAAATCTTCACATGGC
TTTCGATTAATCAAATGGTTGGTAATGCTGACAAATGTCAGCTAATAGTT
AATATCATTGACGACTCGCTC

Coding sequence (CDS) from alignment at sc0000077:616061..616781

>TCONS_00007524 ID=TCONS_00007524|Name=TCONS_00007524|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000077:616061..616781 (Clytia hemisphaerica)
TTTGATGAACAACAATGTGGTTTCAGGAAAGGATATTCCACTCAAACCTC
CCTTCTCCCAATGGAAGAGCTCTGGAAGCTAGCCAATgacaaaaaagatg
tttttgggGCACTGCTCATCAACCTTTCTAAGGCCTTTGACTGCATGTGC
CACAAATTACTTGTAGTAAAGATCAGTGCATACGGGTTTGATGACCTTTC
CACTGGGTTAGTCAAGAGTTATCTAGAAAATAGGCAACAAAGGACAAAAG
TAGGCAACGAACTGAGTAACTGGATCAAGATCAAGGATGGTGTTCCCCAG
GGATCAATCCTTGGCCCTCTGcttttcaatatttatatctgtgacctctt
tttcatcattgaggATACTAAGGTTGCGAATTATGCGGACANTTCCCGat
ga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004254XLOC_004254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007524-proteinTCONS_00007524-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007524-exon-sc0000077-1491911889:616061..616781TCONS_00007524-exon-sc0000077-1491911889:616061..616781Clytia hemisphaericaexon
TCONS_00007524-exon-sc0000077-1510915933:616061..616781TCONS_00007524-exon-sc0000077-1510915933:616061..616781Clytia hemisphaericaexon
TCONS_00007524-exon-sc0000077-1575043694:616061..616781TCONS_00007524-exon-sc0000077-1575043694:616061..616781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:616061..616781 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70271	1.97527	3.9403	5.3947	2.10832	2.27477	2.0321	3.33606	0.596119	1.90086	1.04618	1.24228	1.79446	1.98201	1.06288	1.32923	1.63076	0.9879	2.05537	2.12718	2.73622	2.40388	1.04164	1.11265	1.47902	3.27203	2.3939	1.14797	2.02467	1.56223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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