TCONS_00007514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007514
Unique NameTCONS_00007514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007514 ID=TCONS_00007514|Name=TCONS_00007514|organism=Clytia hemisphaerica|type=transcript|length=434bp
ttttcctcgtcctttcggactcggaaaattaataacaaaaaaatcactcg
tgcaattatattcgaattgcactcgttatcatgtgattacatatactaat
cgaGTCTCAAAGTgggaaattatttaaaaagtgaaaacatgACAAAGACA
ATATGCTATTTTAACGTTACTTTTCTTACAATTGTAAGCATAGAATGCTC
CTATTGATTAACAGACTTAGTTTACAGGAAAACGAGATCAAAGTTATTTT
TGCTGTTTTCCAAGATGTGTTTTTCTTTCCGCCGCCTTTAGTGTTTGGAC
GGTGCTTGCTTAAAGATACAGTGGAGTGTCTCcctaactcgaacacgcac
ggagGACACAAACttgttcaaattatagaaattgTTTACTGAAGTGTAgg
aaactttttcgagttaaggagacattcagTTTAT
Run BLAST on NCBI

transcript from alignment at sc0000077:322189..322622

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007514 ID=TCONS_00007514|Name=TCONS_00007514|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0000077:322189..322622 (Clytia hemisphaerica)
ATAAActgaatgtctccttaactcgaaaaagtttccTACACTTCAGTAAA
caatttctataatttgaacaaGTTTGTGTCctccgtgcgtgttcgagtta
ggGAGACACTCCACTGTATCTTTAAGCAAGCACCGTCCAAACACTAAAGG
CGGCGGAAAGAAAAACACATCTTGGAAAACAGCAAAAATAACTTTGATCT
CGTTTTCCTGTAAACTAAGTCTGTTAATCAATAGGAGCATTCTATGCTTA
CAATTGTAAGAAAAGTAACGTTAAAATAGCATATTGTCTTTGTcatgttt
tcactttttaaataatttcccACTTTGAGACtcgattagtatatgtaatc
acatgataacgagtgcaattcgaatataattgcacgagtgatttttttgt
tattaattttccgagtccgaaaggacgaggaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004244XLOC_004244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007514-exon-sc0000077-1491911889:322189..322622TCONS_00007514-exon-sc0000077-1491911889:322189..322622Clytia hemisphaericaexon
TCONS_00007514-exon-sc0000077-1510915933:322189..322622TCONS_00007514-exon-sc0000077-1510915933:322189..322622Clytia hemisphaericaexon
TCONS_00007514-exon-sc0000077-1575043694:322189..322622TCONS_00007514-exon-sc0000077-1575043694:322189..322622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:322189..322622 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04851	1.50303	3.46222	4.25781	0.899737	0	0	0.314455	1.38831	0	0.383395	0.891776	0.242219	0	1.43852	1.13945	0	0.68792	1.3066	0.447438	1.33109	3.18651	0	1.87005	0.187687	0.201026	10.9401	6.19215	3.60583	2.41378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top